SIMILAR PATTERNS OF AMINO ACIDS FOR 2Z71_C_PNVC904_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xez HEMOLYSIN

(Vibrio cholerae) 		PF07968
(Leukocidin)
PF12563
(Hemolysin_N)
PF16458
(Beta-prism_lec) 		5 GLY A 620
GLN A 600
THR A 314
ASN A 598
GLU A 289
 None
 1.26A 2z71A-1xezA:
0.0
2z71C-1xezA:
0.0		 2z71A-1xezA:
19.23
2z71C-1xezA:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ass S-PHASE
KINASE-ASSOCIATED
PROTEIN 2

(Homo sapiens) 		PF12937
(F-box-like) 		5 ARG B2217
THR B2270
ASN B2296
GLU B2271
LYS B2272
 None
 1.40A 2z71A-2assB:
0.0
2z71C-2assB:
0.0		 2z71A-2assB:
19.06
2z71C-2assB:
19.06
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2oqc PENICILLIN V ACYLASE

(Bacillus
subtilis) 		PF02275
(CBAH) 		5 TYR A  82
ASN A 175
ARG A 228
THR A 268
GLU A 270
 None
 0.74A 2z71A-2oqcA:
46.4
2z71C-2oqcA:
46.6		 2z71A-2oqcA:
40.12
2z71C-2oqcA:
40.12
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2quy PENICILLIN ACYLASE

(Lysinibacillus
sphaericus) 		PF02275
(CBAH) 		5 ARG A 228
THR A 268
ASN A 269
LYS A 272
ASP A 274
 CL  A 336 (-3.2A)
None
None
None
None
 0.86A 2z71A-2quyA:
53.8
2z71C-2quyA:
54.5		 2z71A-2quyA:
99.40
2z71C-2quyA:
99.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2quy PENICILLIN ACYLASE

(Lysinibacillus
sphaericus) 		PF02275
(CBAH) 		5 TYR A  82
ARG A 228
THR A 268
ASN A 269
ASP A 274
 None
CL  A 336 (-3.2A)
None
None
None
 0.76A 2z71A-2quyA:
53.8
2z71C-2quyA:
54.5		 2z71A-2quyA:
99.40
2z71C-2quyA:
99.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rg2 CHOLOYLGLYCINE
HYDROLASE

(Clostridium
perfringens) 		PF02275
(CBAH) 		6 ASN A 175
ARG A 228
THR A 268
GLU A 270
LYS A 272
ASP A 274
 CSO  A   2 (-3.1A)
CSO  A   2 ( 3.4A)
None
None
None
GOL  A 336 ( 4.4A)
 0.77A 2z71A-2rg2A:
42.0
2z71C-2rg2A:
42.5		 2z71A-2rg2A:
36.18
2z71C-2rg2A:
36.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3eey PUTATIVE RRNA
METHYLASE

(Ruminiclostridium
thermocellum) 		PF06962
(rRNA_methylase) 		5 GLY A  32
ASN A  60
THR A  28
ASN A  98
ASP A  52
 SAM  A 300 ( 4.4A)
None
SAM  A 300 (-4.1A)
SAM  A 300 (-4.2A)
SAM  A 300 (-2.9A)
 1.49A 2z71A-3eeyA:
0.0
2z71C-3eeyA:
0.0		 2z71A-3eeyA:
20.18
2z71C-3eeyA:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3slu M23 PEPTIDASE DOMAIN
PROTEIN

(Neisseria
meningitidis) 		PF01551
(Peptidase_M23) 		5 GLY A 131
ARG A 379
THR A 127
ASN A 134
ASP A 128
 None
 1.39A 2z71A-3sluA:
0.0
2z71C-3sluA:
0.0		 2z71A-3sluA:
20.97
2z71C-3sluA:
20.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ala FAB 2H12 HEAVY CHAIN

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 GLY H 100
THR H  97
ASN H  35
GLU H  37
ASP H 105
 None
 1.49A 2z71A-4alaH:
0.0
2z71C-4alaH:
0.0		 2z71A-4alaH:
22.02
2z71C-4alaH:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qiw DNA-DIRECTED RNA
POLYMERASE

(Thermococcus
kodakarensis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF04566
(RNA_pol_Rpb2_4)
PF04567
(RNA_pol_Rpb2_5) 		5 GLY B 526
TYR B 569
ASN B 571
ARG B 347
THR B 179
 None
 1.10A 2z71A-4qiwB:
0.0
2z71C-4qiwB:
0.0		 2z71A-4qiwB:
15.20
2z71C-4qiwB:
15.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5j7z PUTATIVE SECRETED
ENDOGLYCOSYLCERAMIDA
SE

(Rhodococcus
hoagii) 		PF00150
(Cellulase) 		5 GLY A  55
GLN A 363
ASN A  86
THR A 338
GLU A 210
 None
 1.38A 2z71A-5j7zA:
undetectable
2z71C-5j7zA:
undetectable		 2z71A-5j7zA:
20.59
2z71C-5j7zA:
20.59