SIMILAR PATTERNS OF AMINO ACIDS FOR 2Y7K_B_SALB1304

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1hju BETA-1,4-GALACTANASE

(Thermothelomyces
thermophila) 		PF07745
(Glyco_hydro_53) 		5 THR A 113
ILE A 164
GLY A 163
PRO A 173
ILE A 132
 None
 1.47A 2y7kB-1hjuA:
0.0		 2y7kB-1hjuA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jsc ACETOHYDROXY-ACID
SYNTHASE

(Saccharomyces
cerevisiae) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		5 THR A 162
ILE A 118
GLY A 115
TYR A 122
PHE A 133
 2HP  A 698 ( 4.1A)
None
2HP  A 698 (-3.6A)
None
None
 1.44A 2y7kB-1jscA:
0.6		 2y7kB-1jscA:
15.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pss PHOTOSYNTHETIC
REACTION CENTER

(Rhodobacter
sphaeroides) 		PF00124
(Photo_RC) 		5 THR M 222
ILE M 223
GLY M 220
HIS M 266
ILE M 265
 U10  M 303 (-3.5A)
None
None
FE  M 302 (-3.3A)
U10  M 303 (-4.3A)
 1.25A 2y7kB-1pssM:
undetectable		 2y7kB-1pssM:
21.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qnh PEPTIDYL-PROLYL
CIS-TRANS ISOMERASE

(Plasmodium
falciparum) 		PF00160
(Pro_isomerase) 		5 ILE A  74
GLY A  72
PHE A 119
PHE A   9
ILE A 165
 None
 1.33A 2y7kB-1qnhA:
undetectable		 2y7kB-1qnhA:
17.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qon ACETYLCHOLINESTERASE

(Drosophila
melanogaster) 		PF00135
(COesterase) 		5 THR A 154
GLY A 151
PHE A 330
PHE A 371
HIS A 480
 None
SO4  A 593 (-3.4A)
I40  A 997 ( 4.1A)
I40  A 997 (-4.9A)
SO4  A 593 (-4.1A)
 1.31A 2y7kB-1qonA:
undetectable		 2y7kB-1qonA:
15.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zh8 OXIDOREDUCTASE

(Thermotoga
maritima) 		PF01408
(GFO_IDH_MocA)
PF02894
(GFO_IDH_MocA_C) 		5 ILE A  11
GLY A  10
PHE A 283
HIS A  22
ILE A  98
 None
 1.47A 2y7kB-1zh8A:
0.0		 2y7kB-1zh8A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zy9 ALPHA-GALACTOSIDASE

(Thermotoga
maritima) 		PF02065
(Melibiase) 		5 ILE A 326
GLY A 367
PHE A 348
PRO A 260
ILE A 352
 None
 1.31A 2y7kB-1zy9A:
undetectable		 2y7kB-1zy9A:
16.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2aeu HYPOTHETICAL PROTEIN
MJ0158

(Methanocaldococcus
jannaschii) 		PF03841
(SelA) 		5 THR A  52
ILE A  54
GLY A  55
TYR A  58
PHE A  59
 None
 1.00A 2y7kB-2aeuA:
0.1		 2y7kB-2aeuA:
20.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bsz ARYLAMINE
N-ACETYLTRANSFERASE
1

(Mesorhizobium
loti) 		PF00797
(Acetyltransf_2) 		5 GLY A 131
PHE A  42
PHE A 204
HIS A 203
ILE A 209
 None
 1.31A 2y7kB-2bszA:
undetectable		 2y7kB-2bszA:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qk4 TRIFUNCTIONAL PURINE
BIOSYNTHETIC PROTEIN
ADENOSINE-3

(Homo sapiens) 		PF01071
(GARS_A)
PF02843
(GARS_C)
PF02844
(GARS_N) 		5 THR A 316
ILE A 313
PHE A 203
PHE A 293
ILE A 272
 None
 1.50A 2y7kB-2qk4A:
1.0		 2y7kB-2qk4A:
20.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2uye REGULATORY PROTEIN

(Burkholderia
cepacia) 		PF03466
(LysR_substrate) 		6 THR A 104
GLY A 107
PHE A 167
HIS A 206
PRO A 246
ILE A 273
 SCN  A1307 (-4.0A)
SCN  A1303 (-3.5A)
SCN  A1303 (-4.7A)
SCN  A1307 (-3.6A)
None
SCN  A1303 (-4.1A)
 0.89A 2y7kB-2uyeA:
30.5		 2y7kB-2uyeA:
70.03
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2uye REGULATORY PROTEIN

(Burkholderia
cepacia) 		PF03466
(LysR_substrate) 		6 THR A 104
ILE A 106
GLY A 107
PHE A 167
PRO A 246
ILE A 273
 SCN  A1307 (-4.0A)
SCN  A1303 ( 4.9A)
SCN  A1303 (-3.5A)
SCN  A1303 (-4.7A)
None
SCN  A1303 (-4.1A)
 0.82A 2y7kB-2uyeA:
30.5		 2y7kB-2uyeA:
70.03
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2y7r LYSR-TYPE REGULATORY
PROTEIN

(Burkholderia
sp. DNT) 		PF03466
(LysR_substrate) 		9 THR A 104
GLY A 107
TYR A 110
PHE A 111
PHE A 167
HIS A 169
HIS A 206
PRO A 246
ILE A 273
 None
 0.84A 2y7kB-2y7rA:
30.7		 2y7kB-2y7rA:
99.54
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2y7r LYSR-TYPE REGULATORY
PROTEIN

(Burkholderia
sp. DNT) 		PF03466
(LysR_substrate) 		9 THR A 104
ILE A 106
GLY A 107
TYR A 110
PHE A 111
PHE A 167
HIS A 169
PRO A 246
ILE A 273
 None
 0.76A 2y7kB-2y7rA:
30.7		 2y7kB-2y7rA:
99.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l84 TRANSKETOLASE

(Campylobacter
jejuni) 		PF00456
(Transketolase_N)
PF02779
(Transket_pyr)
PF02780
(Transketolase_C) 		5 GLY A 125
PHE A 401
PHE A 379
HIS A 170
ILE A 385
 None
 1.49A 2y7kB-3l84A:
undetectable		 2y7kB-3l84A:
14.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o8q SHIKIMATE
5-DEHYDROGENASE I
ALPHA

(Vibrio cholerae) 		PF01488
(Shikimate_DH)
PF08501
(Shikimate_dh_N) 		5 THR B 153
ILE B 129
PHE B 208
PRO B 201
ILE B 207
 None
 1.16A 2y7kB-3o8qB:
1.5		 2y7kB-3o8qB:
21.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qw2 MYO-INOSITOL-1-PHOSP
HATE SYNTHASE (INO1)

(Archaeoglobus
fulgidus) 		PF01658
(Inos-1-P_synth)
PF07994
(NAD_binding_5) 		5 THR A  14
ILE A  11
GLY A  10
TYR A 260
HIS A  77
 None
NAD  A 396 (-4.4A)
NAD  A 396 (-3.2A)
NAD  A 396 (-3.9A)
None
 1.40A 2y7kB-3qw2A:
0.4		 2y7kB-3qw2A:
21.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3va7 KLLA0E08119P

(Kluyveromyces
lactis) 		PF00289
(Biotin_carb_N)
PF00364
(Biotin_lipoyl)
PF02626
(CT_A_B)
PF02682
(CT_C_D)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		5 THR A1643
ILE A1627
GLY A1616
TYR A1628
PRO A1590
 None
None
None
URE  A1902 (-4.3A)
None
 1.36A 2y7kB-3va7A:
undetectable		 2y7kB-3va7A:
10.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wy2 ALPHA-GLUCOSIDASE

(Halomonas sp.
H11) 		PF00128
(Alpha-amylase)
PF11941
(DUF3459) 		5 THR A 226
GLY A 228
PHE A 166
HIS A 240
ILE A 146
 None
None
BGC  A 605 ( 3.8A)
None
None
 1.17A 2y7kB-3wy2A:
undetectable		 2y7kB-3wy2A:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4be3 ALGINATE LYASE,
FAMILY PL7

(Zobellia
galactanivorans) 		PF08787
(Alginate_lyase2) 		5 THR A 102
ILE A  94
GLY A  57
PHE A  73
ILE A 324
 None
 1.07A 2y7kB-4be3A:
undetectable		 2y7kB-4be3A:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4d3r DUAL SPECIFICITY
PROTEIN PHOSPHATASE
19

(Homo sapiens) 		PF00782
(DSPc) 		5 ILE A 162
GLY A 163
PHE A 129
PRO A 189
ILE A 125
 None
 1.30A 2y7kB-4d3rA:
undetectable		 2y7kB-4d3rA:
19.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i9y E3 SUMO-PROTEIN
LIGASE RANBP2

(Homo sapiens) 		PF00160
(Pro_isomerase) 		5 ILE A  67
GLY A  65
PHE A 112
PHE A   8
ILE A 158
 None
 1.37A 2y7kB-4i9yA:
undetectable		 2y7kB-4i9yA:
22.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ilg A1 CISTRON-SPLICING
FACTOR AAR2

(Saccharomyces
cerevisiae) 		PF05282
(AAR2) 		5 ILE A  33
GLY A  32
PHE A   6
PHE A  46
ILE A  15
 None
 1.19A 2y7kB-4ilgA:
undetectable		 2y7kB-4ilgA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4imi SYMPLEKIN

(Drosophila
melanogaster) 		PF11935
(DUF3453) 		5 ILE A 130
GLY A 128
TYR A 131
PHE A 180
ILE A 158
 None
 1.23A 2y7kB-4imiA:
undetectable		 2y7kB-4imiA:
19.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r6l BACTERIOPHYTOCHROME
(LIGHT-REGULATED
SIGNAL TRANSDUCTION
HISTIDINE KINASE),
PHYB1

(Rhodopseudomonas
palustris) 		PF00360
(PHY)
PF01590
(GAF)
PF08446
(PAS_2) 		5 THR A 267
ILE A 222
GLY A 266
HIS A 255
ILE A 262
 BLA  A 900 (-3.3A)
None
None
BLA  A 900 (-3.3A)
None
 1.20A 2y7kB-4r6lA:
undetectable		 2y7kB-4r6lA:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4whb PHENYLUREA HYDROLASE
B

(Mycolicibacterium
brisbanense) 		no annotation 5 THR E 113
ILE E 143
PHE E 154
HIS E 212
HIS E 273
 None
 1.27A 2y7kB-4whbE:
undetectable		 2y7kB-4whbE:
19.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z7l CAS6B

(Methanococcus
maripaludis) 		PF17262
(DUF5328) 		5 THR A 108
ILE A 163
GLY A 107
PHE A 106
ILE A 152
 None
A  C  23 ( 4.4A)
None
None
None
 1.43A 2y7kB-4z7lA:
undetectable		 2y7kB-4z7lA:
22.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bn4 NEQ263

(Nanoarchaeum
equitans) 		PF00006
(ATP-synt_ab) 		5 THR B 113
ILE B 115
GLY B 114
PHE B 383
PRO B 316
 None
 1.32A 2y7kB-5bn4B:
1.2		 2y7kB-5bn4B:
17.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cg0 BETA-GLUCOSIDASE

(Spodoptera
frugiperda) 		PF00232
(Glyco_hydro_1) 		5 THR A 184
GLY A 243
PHE A 280
PRO A 188
ILE A 279
 None
 1.21A 2y7kB-5cg0A:
0.0		 2y7kB-5cg0A:
17.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5g4i PHOSPHOLYASE

(Paenarthrobacter
aurescens) 		PF00202
(Aminotran_3) 		5 ILE A 176
PHE A 217
PHE A 270
PRO A 177
ILE A 234
 None
 1.35A 2y7kB-5g4iA:
undetectable		 2y7kB-5g4iA:
19.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hct ENDOTHIAPEPSIN

(Cryphonectria
parasitica) 		PF00026
(Asp) 		5 THR A 212
ILE A 214
GLY A 201
PHE A 262
PRO A 228
 None
None
None
None
GOL  A 403 ( 4.0A)
 1.02A 2y7kB-5hctA:
undetectable		 2y7kB-5hctA:
17.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i8i UREA AMIDOLYASE

(Kluyveromyces
lactis) 		PF00289
(Biotin_carb_N)
PF01425
(Amidase)
PF02626
(CT_A_B)
PF02682
(CT_C_D)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		5 THR A1643
ILE A1627
GLY A1616
TYR A1628
PRO A1590
 None
 1.34A 2y7kB-5i8iA:
2.6		 2y7kB-5i8iA:
7.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5p60 ENDOTHIAPEPSIN

(Cryphonectria
parasitica) 		PF00026
(Asp) 		5 THR A 212
ILE A 214
GLY A 201
PHE A 262
PRO A 228
 None
 1.02A 2y7kB-5p60A:
undetectable		 2y7kB-5p60A:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w8x LIPID-A-DISACCHARIDE
SYNTHASE

(Escherichia
coli) 		no annotation 5 THR A 140
ILE A 136
GLY A 137
HIS A 119
PRO A 123
 None
 1.20A 2y7kB-5w8xA:
2.6		 2y7kB-5w8xA:
18.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cim V(D)J
RECOMBINATION-ACTIVA
TING PROTEIN 2

(Mus musculus) 		no annotation 5 ILE B 185
GLY B 153
HIS B  94
PRO B 134
ILE B 142
 None
 1.44A 2y7kB-6cimB:
undetectable		 2y7kB-6cimB:
18.23