SIMILAR PATTERNS OF AMINO ACIDS FOR 2XZ5_A_ACHA1210_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mty METHANE
MONOOXYGENASE
HYDROXYLASE

(Methylococcus
capsulatus) 		PF02332
(Phenol_Hydrox) 		4 TYR D 351
TRP D 390
TYR D 347
ILE D 386
 None
 1.44A 2xz5A-1mtyD:
undetectable
2xz5B-1mtyD:
0.0		 2xz5A-1mtyD:
16.63
2xz5B-1mtyD:
16.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2bj0 ACETYLCHOLINE-BINDIN
G PROTEIN

(Bulinus
truncatus) 		PF02931
(Neur_chan_LBD) 		4 TYR A  88
TRP A 142
TYR A 184
TYR A 191
 None
CXS  A1204 (-3.6A)
CXS  A1204 (-4.6A)
CXS  A1204 (-4.7A)
 0.55A 2xz5A-2bj0A:
24.8
2xz5B-2bj0A:
24.7		 2xz5A-2bj0A:
31.30
2xz5B-2bj0A:
31.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bqx INORGANIC
PYROPHOSPHATASE

(Helicobacter
pylori) 		PF00719
(Pyrophosphatase) 		4 TYR A 140
TYR A  50
TYR A  54
ILE A 133
 None
 1.27A 2xz5A-2bqxA:
undetectable
2xz5B-2bqxA:
undetectable		 2xz5A-2bqxA:
23.77
2xz5B-2bqxA:
23.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i9u CYTOSINE/GUANINE
DEAMINASE RELATED
PROTEIN

(Clostridium
acetobutylicum) 		PF01979
(Amidohydro_1) 		4 TYR A 254
TYR A 250
CYH A 270
ILE A 281
 None
 1.35A 2xz5A-2i9uA:
0.0
2xz5B-2i9uA:
0.0		 2xz5A-2i9uA:
19.68
2xz5B-2i9uA:
19.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vda TRANSLOCASE SUBUNIT
SECA

(Escherichia
coli) 		PF01043
(SecA_PP_bind)
PF07516
(SecA_SW)
PF07517
(SecA_DEAD) 		4 TYR A 384
TYR A 380
TYR A 182
ILE A 214
 None
 1.50A 2xz5A-2vdaA:
0.0
2xz5B-2vdaA:
0.0		 2xz5A-2vdaA:
13.15
2xz5B-2vdaA:
13.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xtq COLICIN-M

(Escherichia
coli) 		PF14859
(Colicin_M) 		4 TYR A 102
TYR A  82
TYR A  18
ILE A 130
 None
 1.29A 2xz5A-2xtqA:
0.0
2xz5B-2xtqA:
undetectable		 2xz5A-2xtqA:
21.58
2xz5B-2xtqA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bxz PREPROTEIN
TRANSLOCASE SUBUNIT
SECA

(Escherichia
coli) 		PF07517
(SecA_DEAD) 		4 TYR A 384
TYR A 380
TYR A 182
ILE A 214
 None
 1.34A 2xz5A-3bxzA:
0.0
2xz5B-3bxzA:
0.0		 2xz5A-3bxzA:
17.87
2xz5B-3bxzA:
17.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cwg SIGNAL TRANSDUCER
AND ACTIVATOR OF
TRANSCRIPTION 3

(Mus musculus) 		PF00017
(SH2)
PF01017
(STAT_alpha)
PF02864
(STAT_bind) 		4 TYR A 584
TYR A 686
CYH A 687
ILE A 654
 None
 1.11A 2xz5A-3cwgA:
0.0
2xz5B-3cwgA:
0.0		 2xz5A-3cwgA:
19.09
2xz5B-3cwgA:
19.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hd5 THIOL:DISULFIDE
INTERCHANGE PROTEIN
DSBA

(Bordetella
parapertussis) 		PF00085
(Thioredoxin)
PF01323
(DSBA) 		4 TYR A  99
TYR A  56
CYH A  61
ILE A  86
 None
 1.23A 2xz5A-3hd5A:
undetectable
2xz5B-3hd5A:
undetectable		 2xz5A-3hd5A:
20.89
2xz5B-3hd5A:
20.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3juc AIG2-LIKE
DOMAIN-CONTAINING
PROTEIN 1

(Homo sapiens) 		PF06094
(GGACT) 		4 TYR A   7
TYR A  88
CYH A  84
TYR A 119
 PCA  A1001 (-3.6A)
PCA  A1001 (-4.6A)
None
None
 1.49A 2xz5A-3jucA:
undetectable
2xz5B-3jucA:
undetectable		 2xz5A-3jucA:
18.92
2xz5B-3jucA:
18.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vw5 CELLOBIOSE
2-EPIMERASE

(Ruminococcus
albus) 		PF07221
(GlcNAc_2-epim) 		4 TYR A 117
TYR A 373
CYH A 371
ILE A  48
 None
 1.48A 2xz5A-3vw5A:
undetectable
2xz5B-3vw5A:
undetectable		 2xz5A-3vw5A:
19.74
2xz5B-3vw5A:
19.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w1s AUTOPHAGY PROTEIN 5

(Saccharomyces
cerevisiae) 		PF04106
(APG5) 		4 TYR A  44
TRP A  83
TYR A  85
ILE A 131
 None
 1.39A 2xz5A-3w1sA:
undetectable
2xz5B-3w1sA:
undetectable		 2xz5A-3w1sA:
22.87
2xz5B-3w1sA:
22.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3zdh ACETYLCHOLINE
BINDING PROTEIN

(Lymnaea
stagnalis) 		PF02931
(Neur_chan_LBD) 		4 TYR A  89
TRP A 143
TYR A 185
TYR A 192
 None
XRS  A 301 (-3.6A)
XRS  A 301 ( 4.1A)
XRS  A 301 (-3.8A)
 0.60A 2xz5A-3zdhA:
25.1
2xz5B-3zdhA:
25.1		 2xz5A-3zdhA:
35.32
2xz5B-3zdhA:
35.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bg2 PATF

(Prochloron
didemni) 		no annotation 4 TYR A 247
CYH A 298
TYR A 300
ILE A 243
 None
 1.22A 2xz5A-4bg2A:
undetectable
2xz5B-4bg2A:
undetectable		 2xz5A-4bg2A:
19.70
2xz5B-4bg2A:
19.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5coz UNCHARACTERIZED
PROTEIN

([Eubacterium]
rectale) 		no annotation 4 TYR A 168
CYH A 251
TYR A 347
ILE A 380
 None
 1.28A 2xz5A-5cozA:
undetectable
2xz5B-5cozA:
undetectable		 2xz5A-5cozA:
19.76
2xz5B-5cozA:
19.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5fjv NEURONAL
ACETYLCHOLINE
RECEPTOR SUBUNIT
ALPHA-2

(Homo sapiens) 		PF02931
(Neur_chan_LBD) 		4 TYR A 122
TRP A 178
TYR A 219
TYR A 226
 EPJ  A 300 (-4.6A)
EPJ  A 300 (-3.7A)
EPJ  A 300 (-3.7A)
EPJ  A 300 (-3.7A)
 0.70A 2xz5A-5fjvA:
22.8
2xz5B-5fjvA:
22.7		 2xz5A-5fjvA:
31.39
2xz5B-5fjvA:
31.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k9t PROTEIN TRANSLOCASE
SUBUNIT SECA

(Escherichia
coli) 		PF01043
(SecA_PP_bind)
PF07517
(SecA_DEAD) 		4 TYR A 384
TYR A 380
TYR A 182
ILE A 214
 None
 1.46A 2xz5A-5k9tA:
undetectable
2xz5B-5k9tA:
undetectable		 2xz5A-5k9tA:
15.49
2xz5B-5k9tA:
15.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kd5 METALLOPEPTIDASE

(Bacteroides
thetaiotaomicron) 		PF13402
(Peptidase_M60)
PF17291
(M60-like_N) 		4 TYR A 656
CYH A 659
TYR A 661
ILE A 755
 None
 1.12A 2xz5A-5kd5A:
undetectable
2xz5B-5kd5A:
undetectable		 2xz5A-5kd5A:
17.56
2xz5B-5kd5A:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kxi NEURONAL
ACETYLCHOLINE
RECEPTOR SUBUNIT
ALPHA-4

(Homo sapiens) 		PF02931
(Neur_chan_LBD)
PF02932
(Neur_chan_memb) 		4 TYR A 100
TRP A 156
TYR A 197
TYR A 204
 NCT  A 402 (-4.8A)
NCT  A 402 (-3.9A)
NCT  A 402 ( 4.9A)
NCT  A 402 (-3.8A)
 0.71A 2xz5A-5kxiA:
24.4
2xz5B-5kxiA:
24.4		 2xz5A-5kxiA:
19.00
2xz5B-5kxiA:
19.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n5z RNA POLYMERASE
I-SPECIFIC
TRANSCRIPTION
INITIATION FACTOR
RRN3

(Saccharomyces
cerevisiae) 		PF05327
(RRN3) 		4 TYR O 423
TYR O 591
TYR O 376
ILE O 418
 None
 1.27A 2xz5A-5n5zO:
undetectable
2xz5B-5n5zO:
undetectable		 2xz5A-5n5zO:
16.06
2xz5B-5n5zO:
16.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uhk O-GLCNACASE
TIM-BARREL DOMAIN

(Homo sapiens) 		PF07555
(NAGidase) 		4 TYR A 111
TYR A 135
TYR A  95
ILE A 123
 None
 1.38A 2xz5A-5uhkA:
undetectable
2xz5B-5uhkA:
undetectable		 2xz5A-5uhkA:
18.75
2xz5B-5uhkA:
18.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uhp O-GLCNACASE
TIM-BARREL DOMAIN

(Homo sapiens) 		PF07555
(NAGidase) 		4 TYR A 111
TYR A 135
TYR A  95
ILE A 123
 None
 1.38A 2xz5A-5uhpA:
undetectable
2xz5B-5uhpA:
undetectable		 2xz5A-5uhpA:
17.01
2xz5B-5uhpA:
17.01