SIMILAR PATTERNS OF AMINO ACIDS FOR 2XRZ_A_ACTA1469

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1b48 PROTEIN (GLUTATHIONE
S-TRANSFERASE)

(Mus musculus) 		PF02798
(GST_N)
PF14497
(GST_C_3) 		4 GLN A 182
GLU A 168
LEU A 175
SER A 176
 None
 1.47A 2xrzA-1b48A:
0.0		 2xrzA-1b48A:
19.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1k0k PROFILIN

(Saccharomyces
cerevisiae) 		PF00235
(Profilin) 		4 GLN A  63
GLU A  41
LEU A  37
SER A  36
 None
 1.17A 2xrzA-1k0kA:
0.0		 2xrzA-1k0kA:
13.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2xry DEOXYRIBODIPYRIMIDIN
E PHOTOLYASE

(Methanosarcina
mazei) 		PF00875
(DNA_photolyase) 		4 GLN A  77
GLU A  80
LEU A 200
SER A 201
 SO4  A1467 (-4.2A)
SO4  A1467 (-2.8A)
SO4  A1467 (-3.9A)
SO4  A1467 (-2.7A)
 0.40A 2xrzA-2xryA:
61.7		 2xrzA-2xryA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3eb8 CYSTEINE
PROTEASE-LIKE VIRA

(Shigella
flexneri) 		PF06872
(EspG) 		4 GLN A 238
GLU A 218
LEU A 234
SER A 235
 None
 1.39A 2xrzA-3eb8A:
0.0		 2xrzA-3eb8A:
22.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k1d 1,4-ALPHA-GLUCAN-BRA
NCHING ENZYME

(Mycobacterium
tuberculosis) 		PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48) 		4 GLN A 273
GLU A 277
LEU A 269
SER A 270
 None
 1.40A 2xrzA-3k1dA:
1.0		 2xrzA-3k1dA:
22.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dpd PROTEIN LYSINE
METHYLTRANSFERASE 1

(Rickettsia
prowazekii) 		PF10119
(MethyTransf_Reg)
PF13847
(Methyltransf_31) 		4 GLN A 405
GLU A 409
LEU A 401
SER A 402
 None
 1.44A 2xrzA-5dpdA:
1.1		 2xrzA-5dpdA:
24.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frl TRYPTOPHAN
HALOGENASE
SUPERFAMILY

(Brevundimonas
sp. BAL3) 		no annotation 4 GLN A 300
GLU A 304
LEU A 296
SER A 297
 None
 1.36A 2xrzA-6frlA:
0.0		 2xrzA-6frlA:
undetectable