SIMILAR PATTERNS OF AMINO ACIDS FOR 2X7H_A_PFNA1375

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fo0 PROTEIN (BM3.3 T
CELL RECEPTOR
ALPHA-CHAIN)
PROTEIN (BM3.3 T
CELL RECEPTOR
BETA-CHAIN)

(Mus musculus) 		PF07686
(V-set) 		4 SER A  30
TYR A  52
PHE A  31
VAL B  99
 None
 1.46A 2x7hA-1fo0A:
undetectable		 2x7hA-1fo0A:
16.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mwo ALPHA AMYLASE

(Pyrococcus
woesei) 		PF00128
(Alpha-amylase)
PF09154
(DUF1939) 		4 SER A 430
PHE A 384
VAL A 404
TYR A 392
 None
 1.13A 2x7hA-1mwoA:
undetectable		 2x7hA-1mwoA:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ovw ENDOGLUCANASE I

(Fusarium
oxysporum) 		PF00840
(Glyco_hydro_7) 		4 SER A 296
TYR A 287
PHE A 251
VAL A 248
 None
 1.30A 2x7hA-1ovwA:
undetectable		 2x7hA-1ovwA:
20.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2e4u METABOTROPIC
GLUTAMATE RECEPTOR 3

(Rattus
norvegicus) 		PF01094
(ANF_receptor)
PF07562
(NCD3G) 		4 SER A 170
PHE A 187
VAL A 157
TYR A 171
 None
 1.29A 2x7hA-2e4uA:
4.6		 2x7hA-2e4uA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g17 N-ACETYL-GAMMA-GLUTA
MYL-PHOSPHATE
REDUCTASE

(Salmonella
enterica) 		PF01118
(Semialdhyde_dh)
PF02774
(Semialdhyde_dhC) 		4 SER A 184
PHE A 235
VAL A 202
TYR A 155
 None
 1.37A 2x7hA-2g17A:
3.1		 2x7hA-2g17A:
22.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g28 PYRUVATE
DEHYDROGENASE E1
COMPONENT

(Escherichia
coli) 		PF00456
(Transketolase_N) 		4 SER A 760
PHE A 807
VAL A 811
TYR A 658
 None
 1.40A 2x7hA-2g28A:
undetectable		 2x7hA-2g28A:
18.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2h0i THIOL:DISULFIDE
INTERCHANGE PROTEIN
DSBG

(Escherichia
coli) 		PF13098
(Thioredoxin_2) 		4 SER A  64
TYR A  42
PHE A  21
TYR A  54
 None
 1.42A 2x7hA-2h0iA:
undetectable		 2x7hA-2h0iA:
20.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ozo TYROSINE-PROTEIN
KINASE ZAP-70

(Homo sapiens) 		PF00017
(SH2)
PF07714
(Pkinase_Tyr) 		4 SER A 144
TYR A 597
VAL A 149
TYR A 397
 None
 1.28A 2x7hA-2ozoA:
undetectable		 2x7hA-2ozoA:
21.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ql6 NICOTINAMIDE
RIBOSIDE KINASE 1

(Homo sapiens) 		PF13238
(AAA_18) 		4 SER A   9
TYR A 154
PHE A 117
VAL A 165
 None
 1.01A 2x7hA-2ql6A:
undetectable		 2x7hA-2ql6A:
20.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2wek ZINC-BINDING ALCOHOL
DEHYDROGENASE
DOMAIN-CONTAINING
PROTEIN 2

(Homo sapiens) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 SER A  77
PHE A  98
VAL A 155
TYR A 275
 DIF  A1373 (-3.0A)
DIF  A1374 ( 3.9A)
DIF  A1373 (-4.4A)
GOL  A1380 (-3.4A)
 0.22A 2x7hA-2wekA:
59.3		 2x7hA-2wekA:
97.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x2i ALPHA-1,4-GLUCAN
LYASE ISOZYME 1

(Gracilariopsis
lemaneiformis) 		PF01055
(Glyco_hydro_31) 		4 TYR A 399
PHE A 368
VAL A 719
TYR A 732
 None
 1.42A 2x7hA-2x2iA:
undetectable		 2x7hA-2x2iA:
16.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x5d PROBABLE
AMINOTRANSFERASE

(Pseudomonas
aeruginosa) 		PF00155
(Aminotran_1_2) 		4 SER A 225
PHE A 193
VAL A 197
TYR A  87
 None
 1.34A 2x7hA-2x5dA:
5.1		 2x7hA-2x5dA:
21.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ynq ESSB

(Geobacillus
thermodenitrificans) 		PF10140
(YukC) 		4 SER A 285
TYR A 281
PHE A 255
VAL A 263
 NA  A1392 ( 4.9A)
MLI  A1391 (-4.7A)
None
None
 1.49A 2x7hA-2ynqA:
undetectable		 2x7hA-2ynqA:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ahi XYLULOSE
5-PHOSPHATE/FRUCTOSE
6-PHOSPHATE
PHOSPHOKETOLASE

(Bifidobacterium
breve) 		PF03894
(XFP)
PF09363
(XFP_C)
PF09364
(XFP_N) 		4 SER A 711
PHE A 577
VAL A 539
TYR A 712
 None
 1.31A 2x7hA-3ahiA:
undetectable		 2x7hA-3ahiA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3buj CALO2

(Micromonospora
echinospora) 		PF00067
(p450) 		4 SER A 333
TYR A 318
PHE A  41
VAL A  44
 None
 1.37A 2x7hA-3bujA:
undetectable		 2x7hA-3bujA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qgv ALPHA AMYLASE

(Pyrococcus
woesei) 		PF00128
(Alpha-amylase)
PF09154
(DUF1939) 		4 SER A 430
PHE A 384
VAL A 404
TYR A 392
 None
 1.19A 2x7hA-3qgvA:
undetectable		 2x7hA-3qgvA:
22.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zbq PHIKZ039

(Pseudomonas
virus phiKZ) 		no annotation 4 SER A 129
TYR A 102
PHE A 151
VAL A 154
 None
 1.31A 2x7hA-3zbqA:
5.4		 2x7hA-3zbqA:
20.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ee8 PRENYLTRANSFERASE

(Streptomyces
cinnamonensis) 		PF11468
(PTase_Orf2) 		4 SER A 286
TYR A 262
VAL A  21
TYR A 269
 None
 0.98A 2x7hA-4ee8A:
undetectable		 2x7hA-4ee8A:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i97 DELTA CLASS 1
GLUTATHIONE
S-TRANSFERASE

(Scaptomyza
nigrita) 		PF00043
(GST_C)
PF02798
(GST_N) 		4 SER A  11
TYR A 106
PHE A 204
VAL A 169
 None
 1.49A 2x7hA-4i97A:
undetectable		 2x7hA-4i97A:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4iv9 TRYPTOPHAN
2-MONOOXYGENASE

(Pseudomonas
savastanoi) 		PF01593
(Amino_oxidase) 		4 SER A 236
TYR A 133
PHE A 150
VAL A 153
 None
 1.22A 2x7hA-4iv9A:
2.8		 2x7hA-4iv9A:
21.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mad BETA-GALACTOSIDASE

(Bacillus
circulans) 		PF01301
(Glyco_hydro_35) 		4 TYR A 123
PHE A 104
VAL A 454
TYR A 158
 None
 1.05A 2x7hA-4madA:
1.8		 2x7hA-4madA:
22.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ntl LIPOPROTEIN, YAEC
FAMILY

(Enterococcus
faecalis) 		PF03180
(Lipoprotein_9) 		4 TYR A 110
PHE A  85
VAL A  38
TYR A 259
 None
 1.03A 2x7hA-4ntlA:
undetectable		 2x7hA-4ntlA:
22.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rae HISTIDINOL-PHOSPHATE
AMINOTRANSFERASE

(Mycobacterium
tuberculosis) 		PF00155
(Aminotran_1_2) 		4 SER A 278
TYR A  82
PHE A 234
VAL A 285
 None
 1.48A 2x7hA-4raeA:
2.4		 2x7hA-4raeA:
24.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rl3 CHITINASE A

(Pteris
ryukyuensis) 		PF00704
(Glyco_hydro_18) 		4 SER A 339
TYR A 319
VAL A 336
TYR A 308
 None
None
None
ACT  A 403 (-4.5A)
 1.46A 2x7hA-4rl3A:
undetectable		 2x7hA-4rl3A:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4txg CHITINASE

(Chromobacterium
violaceum) 		PF00704
(Glyco_hydro_18)
PF06483
(ChiC) 		4 TYR A 342
PHE A 383
VAL A 392
TYR A 315
 None
 1.37A 2x7hA-4txgA:
undetectable		 2x7hA-4txgA:
19.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tzn PROTEIN HTP-2

(Caenorhabditis
elegans) 		PF02301
(HORMA) 		4 SER A 109
PHE A  50
VAL A  53
TYR A 221
 None
 1.22A 2x7hA-4tznA:
undetectable		 2x7hA-4tznA:
20.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tzo PROTEIN HTP-1

(Caenorhabditis
elegans) 		PF02301
(HORMA) 		4 SER A 109
PHE A  50
VAL A  53
TYR A 221
 None
 1.26A 2x7hA-4tzoA:
undetectable		 2x7hA-4tzoA:
20.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ypt REPLICASE
POLYPROTEIN 1AB

(Murine
coronavirus) 		PF08715
(Viral_protease) 		4 SER A1582
PHE A1595
VAL A1566
TYR A1571
 None
 1.46A 2x7hA-4yptA:
undetectable		 2x7hA-4yptA:
22.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ywh ABC TRANSPORTER
SOLUTE BINDING
PROTEIN

(Actinobacillus
succinogenes) 		PF13407
(Peripla_BP_4) 		4 SER A 126
PHE A 127
VAL A 132
TYR A 124
 None
 1.30A 2x7hA-4ywhA:
4.4		 2x7hA-4ywhA:
29.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h05 AMYP

(marine
metagenome) 		PF00128
(Alpha-amylase) 		4 SER A 327
TYR A 435
VAL A 254
TYR A 393
 None
 1.22A 2x7hA-5h05A:
undetectable		 2x7hA-5h05A:
21.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k1u NAD(P)H:FLAVIN
OXIDOREDUCTASE SYE4

(Shewanella
oneidensis) 		PF00724
(Oxidored_FMN) 		4 SER A 236
PHE A 253
VAL A 290
TYR A 240
 None
None
None
TNF  A 402 (-4.5A)
 1.42A 2x7hA-5k1uA:
undetectable		 2x7hA-5k1uA:
22.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kp7 CURD

(Moorea
producens) 		PF01154
(HMG_CoA_synt_N)
PF08540
(HMG_CoA_synt_C) 		4 TYR A 335
PHE A 303
VAL A 140
TYR A 115
 None
 1.46A 2x7hA-5kp7A:
undetectable		 2x7hA-5kp7A:
26.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kzn METABOTROPIC
GLUTAMATE RECEPTOR 2

(Homo sapiens) 		PF01094
(ANF_receptor)
PF07562
(NCD3G) 		4 SER A 164
PHE A 181
VAL A 151
TYR A 165
 None
 1.29A 2x7hA-5kznA:
4.1		 2x7hA-5kznA:
19.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lt1 KINESIN-LIKE PROTEIN

(Homo sapiens) 		PF00225
(Kinesin) 		4 SER A  54
TYR A  29
PHE A  33
VAL A  51
 None
 1.32A 2x7hA-5lt1A:
undetectable		 2x7hA-5lt1A:
21.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m59 PRE-MRNA SPLICING
HELICASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF00270
(DEAD)
PF00271
(Helicase_C)
PF02889
(Sec63) 		4 SER A 941
TYR A 986
PHE A 465
TYR A 974
 None
 1.38A 2x7hA-5m59A:
2.1		 2x7hA-5m59A:
12.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mlq CDPS

(Nocardia
brasiliensis) 		no annotation 4 SER A  55
TYR A  15
PHE A  57
VAL A  60
 None
 1.45A 2x7hA-5mlqA:
2.0		 2x7hA-5mlqA:
12.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vwm UDP-3-O-ACYL-N-ACETY
LGLUCOSAMINE
DEACETYLASE

(Pseudomonas
aeruginosa) 		PF03331
(LpxC) 		4 SER A 252
TYR A 296
PHE A 128
TYR A 247
 None
 1.21A 2x7hA-5vwmA:
undetectable		 2x7hA-5vwmA:
23.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bsz METABOTROPIC
GLUTAMATE RECEPTOR 8

(Homo sapiens) 		no annotation 4 SER A 175
PHE A 192
VAL A 162
TYR A 176
 None
 1.36A 2x7hA-6bszA:
0.6		 2x7hA-6bszA:
11.89