SIMILAR PATTERNS OF AMINO ACIDS FOR 2TCT_A_CTCA222

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gkr NON-ATP DEPENDENT
L-SELECTIVE
HYDANTOINASE

(Paenarthrobacter
aurescens) 		PF01979
(Amidohydro_1) 		5 PHE A 405
PRO A 343
THR A 398
VAL A 419
SER A 412
 None
 1.30A 2tctA-1gkrA:
undetectable		 2tctA-1gkrA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jcu CONSERVED PROTEIN
MTH1692

(Methanothermobacter
thermautotrophicus) 		PF01300
(Sua5_yciO_yrdC) 		5 SER A  65
THR A  97
VAL A  98
ILE A  74
SER A  78
 None
 1.35A 2tctA-1jcuA:
undetectable		 2tctA-1jcuA:
21.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jd1 HYPOTHETICAL 13.9
KDA PROTEIN IN
FCY2-PET117
INTERGENIC REGION

(Saccharomyces
cerevisiae) 		PF01042
(Ribonuc_L-PSP) 		5 SER A  70
ARG A 105
PRO A 103
VAL A  74
ILE A  60
 None
 1.44A 2tctA-1jd1A:
undetectable		 2tctA-1jd1A:
18.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1qpi PROTEIN
(TETRACYCLINE
REPRESSOR)

(Escherichia
coli) 		PF00440
(TetR_N)
PF02909
(TetR_C) 		7 HIS A  64
PHE A  86
GLN A 109
VAL A 113
GLN A 116
ILE A 134
SER A 138
 None
 1.07A 2tctA-1qpiA:
25.8		 2tctA-1qpiA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1qpi PROTEIN
(TETRACYCLINE
REPRESSOR)

(Escherichia
coli) 		PF00440
(TetR_N)
PF02909
(TetR_C) 		9 HIS A  64
SER A  67
PHE A  86
HIS A 100
THR A 112
VAL A 113
GLN A 116
ILE A 134
SER A 138
 None
None
None
IMD  A   1 (-4.0A)
None
None
None
None
None
 0.70A 2tctA-1qpiA:
25.8		 2tctA-1qpiA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1x25 HYPOTHETICAL UPF0076
PROTEIN ST0811

(Sulfurisphaera
tokodaii) 		PF01042
(Ribonuc_L-PSP) 		5 SER A  67
ARG A 102
PRO A 100
VAL A  71
ILE A  57
 None
 1.46A 2tctA-1x25A:
undetectable		 2tctA-1x25A:
21.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2rb5 PUTATIVE
UNCHARACTERIZED
PROTEIN

(Bacteroides
thetaiotaomicron) 		PF08282
(Hydrolase_3) 		5 PHE A 178
PRO A  46
GLN A 149
VAL A 107
ILE A 134
 None
 1.02A 2tctA-2rb5A:
0.2		 2tctA-2rb5A:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x0s PYRUVATE PHOSPHATE
DIKINASE

(Trypanosoma
brucei) 		PF00391
(PEP-utilizers)
PF01326
(PPDK_N)
PF02896
(PEP-utilizers_C) 		5 PHE A 786
ARG A 642
PRO A 730
VAL A 732
ILE A 768
 None
 1.50A 2tctA-2x0sA:
1.0		 2tctA-2x0sA:
12.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a1i AMIDASE

(Rhodococcus sp.
N-771) 		PF01425
(Amidase) 		5 SER A 147
ARG A 366
THR A 376
VAL A 377
ILE A 223
 None
 1.24A 2tctA-3a1iA:
undetectable		 2tctA-3a1iA:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2l HALOALKANE
DEHALOGENASE

(Bradyrhizobium
japonicum) 		PF00561
(Abhydrolase_1) 		5 HIS A  36
SER A  41
HIS A  81
ARG A 208
PRO A 209
 None
 1.30A 2tctA-3a2lA:
0.0		 2tctA-3a2lA:
23.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lk6 LIPOPROTEIN YBBD

(Bacillus
subtilis) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C) 		5 PHE A 571
PRO A 521
THR A 621
VAL A 620
ILE A 617
 None
 1.12A 2tctA-3lk6A:
0.8		 2tctA-3lk6A:
15.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mn2 PROBABLE ARAC FAMILY
TRANSCRIPTIONAL
REGULATOR

(Rhodopseudomonas
palustris) 		PF12833
(HTH_18) 		5 SER A 295
PHE A 298
ARG A 309
PRO A 316
VAL A 289
 None
 1.40A 2tctA-3mn2A:
1.8		 2tctA-3mn2A:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qsl PUTATIVE EXPORTED
PROTEIN

(Bordetella
bronchiseptica) 		PF13379
(NMT1_2) 		5 HIS A  95
SER A 148
PRO A 116
THR A 150
VAL A 153
 CIT  A 347 (-4.1A)
CIT  A 347 (-3.6A)
None
CIT  A 347 (-3.2A)
None
 1.43A 2tctA-3qslA:
undetectable		 2tctA-3qslA:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3upy OXIDOREDUCTASE

(Brucella
abortus) 		PF03447
(NAD_binding_3) 		5 SER A 273
PRO A 252
VAL A 271
ILE A 264
SER A 188
 None
 1.25A 2tctA-3upyA:
undetectable		 2tctA-3upyA:
20.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4ac0 TETRACYCLINE
REPRESSOR PROTEIN
CLASS B FROM
TRANSPOSON TN1 0

(Escherichia
coli) 		PF00440
(TetR_N)
PF02909
(TetR_C) 		6 HIS A  64
PHE A  86
HIS A 100
ARG A 104
PRO A 105
GLN A 109
 MIY  A1204 (-3.8A)
MIY  A1204 (-3.5A)
MG  A1205 ( 3.2A)
MIY  A1204 (-4.2A)
MIY  A1204 (-4.4A)
MIY  A1204 (-3.9A)
 0.86A 2tctA-4ac0A:
26.1		 2tctA-4ac0A:
64.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4ac0 TETRACYCLINE
REPRESSOR PROTEIN
CLASS B FROM
TRANSPOSON TN1 0

(Escherichia
coli) 		PF00440
(TetR_N)
PF02909
(TetR_C) 		7 HIS A  64
PHE A  86
HIS A 100
PRO A 105
GLN A 109
THR A 112
GLN A 116
 MIY  A1204 (-3.8A)
MIY  A1204 (-3.5A)
MG  A1205 ( 3.2A)
MIY  A1204 (-4.4A)
MIY  A1204 (-3.9A)
MIY  A1204 ( 4.7A)
MIY  A1204 (-2.8A)
 0.52A 2tctA-4ac0A:
26.1		 2tctA-4ac0A:
64.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4d5c TETRACYCLINE
REPRESSOR PROTEIN
TETR

(Proteus
mirabilis) 		PF00440
(TetR_N)
PF02909
(TetR_C) 		8 HIS A  64
PHE A  86
HIS A 100
ARG A 104
PRO A 105
GLN A 109
THR A 112
GLN A 116
 None
 0.81A 2tctA-4d5cA:
26.7		 2tctA-4d5cA:
60.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gq2 NUCLEOPORIN NUP120

(Schizosaccharomyces
pombe) 		PF11715
(Nup160) 		5 SER M 590
PHE M 406
ARG M 496
THR M 411
ILE M 418
 None
 1.50A 2tctA-4gq2M:
1.3		 2tctA-4gq2M:
12.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4iig BETA-GLUCOSIDASE 1

(Aspergillus
aculeatus) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 SER A  93
PHE A 106
HIS A 388
GLN A 140
ILE A 179
 None
 1.45A 2tctA-4iigA:
undetectable		 2tctA-4iigA:
13.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fjj BETA-GLUCOSIDASE

(Aspergillus
oryzae) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 SER A  94
PHE A 107
HIS A 389
GLN A 141
ILE A 180
 None
 1.43A 2tctA-5fjjA:
undetectable		 2tctA-5fjjA:
14.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fno MANGANESE
LIPOXYGENASE

(Magnaporthe
oryzae) 		PF00305
(Lipoxygenase) 		5 HIS A 487
SER A 481
GLN A 519
ILE A 143
SER A 148
 None
 1.15A 2tctA-5fnoA:
1.7		 2tctA-5fnoA:
17.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ju6 BETA-GLUCOSIDASE

(Rasamsonia
emersonii) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 SER A  93
PHE A 106
HIS A 384
GLN A 140
ILE A 179
 None
 1.43A 2tctA-5ju6A:
undetectable		 2tctA-5ju6A:
13.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mbg BETA SUBUNIT OF
PHOTOACTIVATED
ADENYLYL CYCLASE

(Beggiatoa sp.
PS) 		PF00211
(Guanylate_cyc) 		5 SER A 249
PHE A 154
THR A 293
ILE A 216
SER A 219
 None
None
IOD  A 403 ( 4.9A)
None
None
 1.36A 2tctA-5mbgA:
undetectable		 2tctA-5mbgA:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mbh BETA SUBUNIT OF
PHOTOACTIVATED
ADENYLYL CYCLASE

(Beggiatoa sp.
PS) 		PF00211
(Guanylate_cyc)
PF04940
(BLUF) 		5 SER A 249
PHE A 154
THR A 293
ILE A 216
SER A 219
 None
 1.33A 2tctA-5mbhA:
undetectable		 2tctA-5mbhA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mru TETRACYCLINE
REPRESSOR, CLASS A

(Pseudomonas sp.) 		no annotation 7 HIS A  64
PHE A  86
HIS A 100
ARG A 104
PRO A 105
THR A 112
GLN A 116
 TDC  A 301 (-3.8A)
TDC  A 301 (-3.3A)
MG  A 302 ( 3.2A)
TDC  A 301 (-4.0A)
TDC  A 301 (-4.5A)
None
TDC  A 301 (-2.8A)
 0.60A 2tctA-5mruA:
23.8		 2tctA-5mruA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mru TETRACYCLINE
REPRESSOR, CLASS A

(Pseudomonas sp.) 		no annotation 7 HIS A  64
SER A  67
PHE A  86
HIS A 100
PRO A 105
THR A 112
GLN A 116
 TDC  A 301 (-3.8A)
TDC  A 301 (-3.3A)
TDC  A 301 (-3.3A)
MG  A 302 ( 3.2A)
TDC  A 301 (-4.5A)
None
TDC  A 301 (-2.8A)
 0.65A 2tctA-5mruA:
23.8		 2tctA-5mruA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mru TETRACYCLINE
REPRESSOR, CLASS A

(Pseudomonas sp.) 		no annotation 7 HIS A  64
SER A  67
PHE A  86
PRO A 105
THR A 112
GLN A 116
SER A 138
 TDC  A 301 (-3.8A)
TDC  A 301 (-3.3A)
TDC  A 301 (-3.3A)
TDC  A 301 (-4.5A)
None
TDC  A 301 (-2.8A)
TDC  A 301 ( 3.7A)
 0.84A 2tctA-5mruA:
23.8		 2tctA-5mruA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bfi VIN1

(Oscarella
pearsei) 		no annotation 5 PHE A 499
ARG A 536
GLN A 543
ILE A 507
SER A 503
 None
 1.48A 2tctA-6bfiA:
0.9		 2tctA-6bfiA:
undetectable