SIMILAR PATTERNS OF AMINO ACIDS FOR 2REZ_A_ACTA156

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cvr GINGIPAIN R

(Porphyromonas
gingivalis) 		PF01364
(Peptidase_C25)
PF03785
(Peptidase_C25_C) 		4 GLU A 132
THR A 128
MET A  12
LEU A  36
 None
 1.14A 2rezA-1cvrA:
0.0		 2rezA-1cvrA:
17.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1f7c RHOGAP PROTEIN

(Gallus gallus) 		PF00620
(RhoGAP) 		4 GLU A 253
THR A 256
TRP A 252
ARG A 211
 None
 1.21A 2rezA-1f7cA:
undetectable		 2rezA-1f7cA:
19.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ulv GLUCODEXTRANASE

(Arthrobacter
globiformis) 		PF00723
(Glyco_hydro_15)
PF09136
(Glucodextran_B)
PF09137
(Glucodextran_N)
PF09985
(Glucodextran_C) 		4 GLU A  71
THR A  93
TRP A 100
LEU A 131
 None
 1.38A 2rezA-1ulvA:
0.8		 2rezA-1ulvA:
9.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z6x ADP-RIBOSYLATION
FACTOR 4

(Homo sapiens) 		PF00025
(Arf) 		4 THR A  64
TRP A  66
MET A 110
LEU A  88
 None
 1.34A 2rezA-1z6xA:
0.0		 2rezA-1z6xA:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i34 ACID PHOSPHATASE

(Bacillus
anthracis) 		PF03767
(Acid_phosphat_B) 		4 GLU A  68
TRP A  94
TRP A  91
LEU A  71
 None
 1.44A 2rezA-2i34A:
0.0		 2rezA-2i34A:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ihs CG2944-PF, ISOFORM F

(Drosophila
melanogaster) 		PF00622
(SPRY) 		4 THR A 123
TRP A 144
MET A 187
LEU A 185
 None
 1.35A 2rezA-2ihsA:
0.0		 2rezA-2ihsA:
20.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jk9 SPRY
DOMAIN-CONTAINING
SOCS BOX PROTEIN 1

(Homo sapiens) 		PF00622
(SPRY) 		4 THR A 119
TRP A 140
MET A 183
LEU A 181
 None
 1.33A 2rezA-2jk9A:
0.0		 2rezA-2jk9A:
22.33
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rez MULTIFUNCTIONAL
CYCLASE-DEHYDRATASE-
3-O-METHYL
TRANSFERASE TCMN

(Streptomyces
glaucescens) 		PF03364
(Polyketide_cyc) 		7 GLU A  34
THR A  54
TRP A  63
TRP A  65
ARG A  82
MET A 125
LEU A 129
 ACT  A 156 (-4.0A)
ACT  A 156 ( 4.5A)
ACT  A 156 (-3.6A)
ACT  A 156 (-4.9A)
IOD  A 157 (-3.6A)
ACT  A 156 ( 3.9A)
None
 0.04A 2rezA-2rezA:
30.5		 2rezA-2rezA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uwf ALKALINE ACTIVE
ENDOXYLANASE

(Bacillus
halodurans) 		PF00331
(Glyco_hydro_10) 		4 GLU A 206
THR A 247
ARG A 296
LEU A 266
 None
 1.49A 2rezA-2uwfA:
0.0		 2rezA-2uwfA:
17.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2v9t SLIT HOMOLOG 2
PROTEIN N-PRODUCT

(Homo sapiens) 		PF01462
(LRRNT)
PF01463
(LRRCT)
PF13855
(LRR_8) 		4 THR B 415
TRP B 440
MET B 425
LEU B 427
 None
 1.43A 2rezA-2v9tB:
0.0		 2rezA-2v9tB:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x6n INTEGRASE

(Simian foamy
virus) 		PF00665
(rve) 		4 THR A 174
TRP A 198
MET A 127
LEU A 143
 None
 1.33A 2rezA-2x6nA:
undetectable		 2rezA-2x6nA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3egw RESPIRATORY NITRATE
REDUCTASE 1 ALPHA
CHAIN

(Escherichia
coli) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF14710
(Nitr_red_alph_N) 		4 GLU A 961
THR A 962
MET A 196
LEU A 583
 None
 1.30A 2rezA-3egwA:
undetectable		 2rezA-3egwA:
8.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ek9 SPRY
DOMAIN-CONTAINING
SOCS BOX PROTEIN 2

(Mus musculus) 		PF00622
(SPRY) 		4 THR A 110
TRP A 131
MET A 173
LEU A 171
 None
 1.37A 2rezA-3ek9A:
undetectable		 2rezA-3ek9A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3if6 OXA-46 OXACILLINASE

(Pseudomonas
aeruginosa) 		PF00905
(Transpeptidase) 		4 GLU C 200
THR C 199
TRP C 220
LEU C 263
 None
 1.48A 2rezA-3if6C:
undetectable		 2rezA-3if6C:
19.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lhe GNTR FAMILY
TRANSCRIPTIONAL
REGULATOR

(Bacillus
anthracis) 		PF07702
(UTRA) 		4 GLU A 229
THR A 230
MET A 196
LEU A 198
 None
 1.23A 2rezA-3lheA:
undetectable		 2rezA-3lheA:
21.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3m6j UNCHARACTERIZED
PROTEIN

(Leptospirillum
rubarum) 		no annotation 4 GLU A  57
THR A  56
ARG A  50
LEU A  11
 None
 1.47A 2rezA-3m6jA:
undetectable		 2rezA-3m6jA:
22.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3m6x RRNA METHYLASE

(Thermus
thermophilus) 		PF01189
(Methyltr_RsmB-F)
PF17125
(Methyltr_RsmF_N)
PF17126
(RsmF_methylt_CI) 		4 GLU A 235
ARG A 281
MET A  10
LEU A  13
 None
 1.18A 2rezA-3m6xA:
undetectable		 2rezA-3m6xA:
14.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nqp SUSD SUPERFAMILY
PROTEIN

(Bacteroides
fragilis) 		PF07980
(SusD_RagB)
PF14322
(SusD-like_3) 		4 GLU A 521
THR A 104
ARG A 184
LEU A 525
 None
 1.46A 2rezA-3nqpA:
undetectable		 2rezA-3nqpA:
14.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q8n 4-AMINOBUTYRATE
TRANSAMINASE

(Mycolicibacterium
smegmatis) 		PF00202
(Aminotran_3) 		4 GLU A 265
THR A 268
ARG A 376
LEU A 247
 None
 1.26A 2rezA-3q8nA:
undetectable		 2rezA-3q8nA:
15.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i70 INOSINE-ADENOSINE-GU
ANOSINE-NUCLEOSIDE
HYDROLASE

(Trypanosoma
brucei) 		PF01156
(IU_nuc_hydro) 		4 GLU A 111
TRP A 105
MET A  54
LEU A  65
 None
 1.42A 2rezA-4i70A:
undetectable		 2rezA-4i70A:
20.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pe3 TRAP DICARBOXYLATE
TRANSPORTER-DCTP
SUBUNIT

(Rhodobacter
sphaeroides) 		PF03480
(DctP) 		4 GLU A 262
THR A 112
ARG A 120
LEU A 162
 ACT  A 404 (-2.8A)
None
ACT  A 404 ( 3.8A)
ACT  A 404 (-4.9A)
 1.11A 2rezA-4pe3A:
1.1		 2rezA-4pe3A:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cxp POSSIBLE XYLAN
DEGRADATION ENZYME
(GLYCOSYL HYDROLASE
FAMILY 30-LIKE
DOMAIN AND RICIN
B-LIKE DOMAIN)

(Clostridium
acetobutylicum) 		PF02055
(Glyco_hydro_30) 		4 THR A 121
TRP A  57
TRP A  65
MET A  93
 None
 1.22A 2rezA-5cxpA:
undetectable		 2rezA-5cxpA:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yvf -

(-) 		no annotation 4 THR A  92
ARG A 217
MET A 169
LEU A 170
 None
 1.03A 2rezA-5yvfA:
1.6		 2rezA-5yvfA:
undetectable