SIMILAR PATTERNS OF AMINO ACIDS FOR 2QO5_A_CHDA130

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ltz PHENYLALANINE-4-HYDR
OXYLASE


(Chromobacterium
violaceum)
PF00351
(Biopterin_H)
5 TYR A 262
LEU A 175
ALA A 166
LEU A 224
MET A 228
CL  A 401 ( 4.9A)
None
CL  A 401 ( 4.9A)
None
None
1.19A 2qo5A-1ltzA:
0.0
2qo5A-1ltzA:
18.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ltz PHENYLALANINE-4-HYDR
OXYLASE


(Chromobacterium
violaceum)
PF00351
(Biopterin_H)
5 TYR A 262
VAL A 164
ALA A 166
LEU A 224
MET A 228
CL  A 401 ( 4.9A)
None
CL  A 401 ( 4.9A)
None
None
1.34A 2qo5A-1ltzA:
0.0
2qo5A-1ltzA:
18.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wcg THIOGLUCOSIDASE

(Brevicoryne
brassicae)
PF00232
(Glyco_hydro_1)
5 TYR A 147
LEU A 151
VAL A 118
LEU A  94
MET A  91
None
1.38A 2qo5A-1wcgA:
0.0
2qo5A-1wcgA:
15.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1whb KIAA0055

(Homo sapiens)
PF00581
(Rhodanese)
5 LEU A 111
VAL A  64
ALA A 114
LEU A  53
MET A  36
None
1.36A 2qo5A-1whbA:
0.0
2qo5A-1whbA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2avd CATECHOL-O-METHYLTRA
NSFERASE


(Homo sapiens)
PF01596
(Methyltransf_3)
5 TYR A 115
LEU A  69
ALA A  91
MET A  63
LEU A  74
None
1.29A 2qo5A-2avdA:
0.0
2qo5A-2avdA:
21.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cya TYROSYL-TRNA
SYNTHETASE


(Aeropyrum
pernix)
PF00579
(tRNA-synt_1b)
5 TYR A  57
LEU A  53
VAL A 101
ALA A 105
LEU A 284
None
1.42A 2qo5A-2cyaA:
0.0
2qo5A-2cyaA:
18.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2ftb FATTY ACID-BINDING
PROTEIN 2, LIVER


(Ambystoma
mexicanum)
PF14651
(Lipocalin_7)
5 TYR A  14
LEU A  18
ALA A  31
LEU A 111
ARG A 120
None
None
OLA  A 130 (-3.3A)
None
None
0.82A 2qo5A-2ftbA:
22.0
2qo5A-2ftbA:
68.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2qo4 LIVER-BASIC FATTY
ACID BINDING PROTEIN


(Danio rerio)
PF14651
(Lipocalin_7)
5 LYS A  56
MET A  73
LEU A 111
MET A 118
ARG A 120
CHD  A 130 (-2.9A)
None
CHD  A 130 ( 4.9A)
CHD  A 130 ( 3.8A)
CHD  A 130 (-3.4A)
0.94A 2qo5A-2qo4A:
22.3
2qo5A-2qo4A:
98.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2qo4 LIVER-BASIC FATTY
ACID BINDING PROTEIN


(Danio rerio)
PF14651
(Lipocalin_7)
6 TYR A  14
ALA A  31
LYS A  56
LEU A 111
MET A 118
ARG A 120
None
CHD  A 130 ( 3.8A)
CHD  A 130 (-2.9A)
CHD  A 130 ( 4.9A)
CHD  A 130 ( 3.8A)
CHD  A 130 (-3.4A)
0.67A 2qo5A-2qo4A:
22.3
2qo5A-2qo4A:
98.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2qo4 LIVER-BASIC FATTY
ACID BINDING PROTEIN


(Danio rerio)
PF14651
(Lipocalin_7)
7 TYR A  14
LEU A  18
VAL A  27
ALA A  31
LEU A 111
MET A 118
ARG A 120
None
CHD  A 130 ( 4.7A)
None
CHD  A 130 ( 3.8A)
CHD  A 130 ( 4.9A)
CHD  A 130 ( 3.8A)
CHD  A 130 (-3.4A)
0.51A 2qo5A-2qo4A:
22.3
2qo5A-2qo4A:
98.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h7j BACILYSIN
BIOSYNTHESIS PROTEIN
BACB


(Bacillus
subtilis)
PF07883
(Cupin_2)
5 TYR A  83
VAL A  89
ALA A  85
LEU A  65
MET A  76
None
1.48A 2qo5A-3h7jA:
1.5
2qo5A-3h7jA:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lys PROPHAGE PI2 PROTEIN
01, INTEGRASE


(Lactococcus
lactis)
PF14659
(Phage_int_SAM_3)
5 LEU A 112
VAL A 154
ALA A 152
LEU A  91
MET A  95
None
1.47A 2qo5A-3lysA:
undetectable
2qo5A-3lysA:
23.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dji 3'-PHOSPHOADENOSINE
5'-PHOSPHATE
PHOSPHATASE


(Mycobacterium
tuberculosis)
PF00459
(Inositol_P)
5 LEU A 248
VAL A 254
ALA A 201
MET A 225
LEU A 235
None
1.41A 2qo5A-5djiA:
0.6
2qo5A-5djiA:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ufh LACI-TYPE
TRANSCRIPTIONAL
REGULATOR


(Bifidobacterium
animalis)
PF13377
(Peripla_BP_3)
5 LEU A 183
ALA A 186
MET A 261
MET A 166
ARG A 206
None
None
None
None
GOL  A 401 (-2.7A)
1.34A 2qo5A-5ufhA:
undetectable
2qo5A-5ufhA:
14.66