SIMILAR PATTERNS OF AMINO ACIDS FOR 2QEO_B_LNRB200_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1irx LYSYL-TRNA
SYNTHETASE

(Pyrococcus
horikoshii) 		PF01921
(tRNA-synt_1f) 		5 GLU A 298
ARG A 413
ILE A 305
ASP A 328
GLU A 331
 None
 1.23A 2qeoB-1irxA:
0.0		 2qeoB-1irxA:
15.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1or7 RNA POLYMERASE
SIGMA-E FACTOR
SIGMA-E FACTOR
NEGATIVE REGULATORY
PROTEIN

(Escherichia
coli) 		PF03872
(RseA_N)
PF04542
(Sigma70_r2)
PF08281
(Sigma70_r4_2) 		5 ARG C  40
TYR A  29
TYR A  75
ASP A   7
GLU A   3
 None
 1.27A 2qeoB-1or7C:
undetectable		 2qeoB-1or7C:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w52 PANCREATIC LIPASE
RELATED PROTEIN 2

(Equus caballus) 		PF00151
(Lipase)
PF01477
(PLAT) 		5 GLU X  99
ILE X  95
HIS X  73
ILE X 151
TYR X 272
 CA  X 601 ( 4.4A)
None
None
None
None
 1.43A 2qeoB-1w52X:
undetectable		 2qeoB-1w52X:
14.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yt8 THIOSULFATE
SULFURTRANSFERASE

(Pseudomonas
aeruginosa) 		PF00581
(Rhodanese) 		5 GLU A 313
ARG A 154
HIS A 316
GLU A 495
ASP A 156
 None
None
GOL  A 541 (-3.7A)
None
None
 1.23A 2qeoB-1yt8A:
0.0		 2qeoB-1yt8A:
10.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o3c APEX NUCLEASE 1

(Danio rerio) 		PF03372
(Exo_endo_phos) 		5 GLU A  80
ARG A 293
ASP A 289
GLU A  43
ASP A  40
 None
 1.23A 2qeoB-2o3cA:
undetectable		 2qeoB-2o3cA:
19.29
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2pql D7R4 PROTEIN

(Anopheles
gambiae) 		PF01395
(PBP_GOBP) 		10 GLU A   7
ILE A  21
ARG A  22
TYR A  24
HIS A  35
ILE A  36
TYR A  94
ASP A 111
GLU A 114
ASP A 139
 TSS  A 145 ( 4.9A)
TSS  A 145 (-4.8A)
TSS  A 145 (-3.5A)
TSS  A 145 (-3.4A)
TSS  A 145 (-4.3A)
None
None
TSS  A 145 (-3.5A)
TSS  A 145 (-3.6A)
TSS  A 145 ( 4.7A)
 0.43A 2qeoB-2pqlA:
29.0		 2qeoB-2pqlA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2rd7 COMPLEMENT COMPONENT
C8 ALPHA CHAIN

(Homo sapiens) 		PF01823
(MACPF) 		5 GLU A 322
ILE A 324
ARG A 392
TYR A 200
ASP A 242
 None
 1.43A 2qeoB-2rd7A:
undetectable		 2qeoB-2rd7A:
14.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ux8 GLUCOSE-1-PHOSPHATE
URIDYLYLTRANSFERASE

(Sphingomonas
elodea) 		PF00483
(NTP_transferase) 		5 GLU A 161
ARG A 253
ILE A 158
TYR A 208
ASP A 255
 None
G1P  A1290 ( 4.4A)
None
None
G1P  A1290 ( 4.7A)
 1.40A 2qeoB-2ux8A:
undetectable		 2qeoB-2ux8A:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vda TRANSLOCASE SUBUNIT
SECA

(Escherichia
coli) 		PF01043
(SecA_PP_bind)
PF07516
(SecA_SW)
PF07517
(SecA_DEAD) 		5 GLU A 763
ILE A 676
ARG A 760
ILE A 823
GLU A 751
 None
 1.31A 2qeoB-2vdaA:
0.0		 2qeoB-2vdaA:
11.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xeh NI3C MUT6

(synthetic
construct) 		PF12796
(Ank_2) 		5 GLU A  57
ARG A  56
HIS A  59
ILE A  62
ASP A  44
 None
SO4  A1172 ( 2.8A)
None
None
None
 1.13A 2qeoB-2xehA:
undetectable		 2qeoB-2xehA:
23.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bga BETA-GALACTOSIDASE

(Bacteroides
thetaiotaomicron) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF02929
(Bgal_small_N)
PF16353
(DUF4981) 		5 GLU A 125
ILE A 118
ARG A 230
TYR A 119
ASP A 227
 None
None
None
None
NA  A   4 (-2.8A)
 1.22A 2qeoB-3bgaA:
undetectable		 2qeoB-3bgaA:
9.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dzt D7 PROTEIN

(Aedes aegypti) 		PF01395
(PBP_GOBP) 		6 GLU A 158
ILE A 175
TYR A 178
HIS A 189
TYR A 248
ASP A 265
 TRS  A 306 ( 4.7A)
None
TRS  A 306 (-3.8A)
GOL  A 307 (-4.0A)
GOL  A 307 (-4.3A)
TRS  A 306 (-3.6A)
 0.45A 2qeoB-3dztA:
15.0		 2qeoB-3dztA:
18.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fhh OUTER MEMBRANE HEME
RECEPTOR SHUA

(Shigella
dysenteriae) 		PF00593
(TonB_dep_Rec)
PF07715
(Plug) 		5 GLU A 191
ILE A 193
ARG A 176
ASP A  40
ASP A 149
 None
 1.37A 2qeoB-3fhhA:
undetectable		 2qeoB-3fhhA:
11.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nhi D7 PROTEIN

(Anopheles
stephensi) 		PF01395
(PBP_GOBP) 		5 TYR A 179
ILE A 191
TYR A 243
ASP A 260
GLU A 263
 SO4  A 299 (-4.9A)
None
None
None
None
 0.74A 2qeoB-3nhiA:
12.0		 2qeoB-3nhiA:
16.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pzu ENDOGLUCANASE

(Bacillus
subtilis) 		PF00150
(Cellulase) 		5 GLU A 165
ARG A  92
TYR A  96
ILE A 132
GLU A 257
 None
 1.34A 2qeoB-3pzuA:
0.0		 2qeoB-3pzuA:
16.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ddw REVERSE GYRASE

(Thermotoga
maritima) 		PF00270
(DEAD)
PF01131
(Topoisom_bac)
PF01751
(Toprim) 		5 GLU A 512
ILE A 510
ARG A 292
ASP A 491
GLU A 492
 None
 1.47A 2qeoB-4ddwA:
0.0		 2qeoB-4ddwA:
8.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4el8 GLYCOSIDE HYDROLASE
FAMILY 48

(Caldicellulosiruptor
bescii) 		PF02011
(Glyco_hydro_48) 		5 GLU A 546
ARG A 548
ILE A 496
GLU A  44
ASP A 550
 None
 1.31A 2qeoB-4el8A:
undetectable		 2qeoB-4el8A:
11.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4exb PUTATIVE
UNCHARACTERIZED
PROTEIN

(Pseudomonas
aeruginosa) 		PF00248
(Aldo_ket_red) 		5 GLU A 130
ARG A 128
ILE A  65
GLU A  87
ASP A 127
 None
 1.25A 2qeoB-4exbA:
undetectable		 2qeoB-4exbA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4exb PUTATIVE
UNCHARACTERIZED
PROTEIN

(Pseudomonas
aeruginosa) 		PF00248
(Aldo_ket_red) 		5 GLU A 130
ILE A  91
ARG A 128
GLU A  87
ASP A 127
 None
 1.45A 2qeoB-4exbA:
undetectable		 2qeoB-4exbA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fus RTX TOXINS AND
RELATED CA2+-BINDING
PROTEIN

(Hahella
chejuensis) 		PF02011
(Glyco_hydro_48) 		5 GLU A 582
ARG A 584
ILE A 532
GLU A  72
ASP A 586
 None
GOL  A 804 ( 4.8A)
None
CBI  A 802 ( 3.3A)
GOL  A 804 (-3.5A)
 1.32A 2qeoB-4fusA:
undetectable		 2qeoB-4fusA:
11.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h1s 5'-NUCLEOTIDASE

(Homo sapiens) 		PF00149
(Metallophos)
PF02872
(5_nucleotid_C) 		5 GLU A  42
ILE A 324
ARG A 328
GLU A 409
ASP A 332
 None
 1.46A 2qeoB-4h1sA:
undetectable		 2qeoB-4h1sA:
15.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o48 UNCHARACTERIZED
PROTEIN

(Cavia porcellus) 		PF01112
(Asparaginase_2) 		5 GLU A  49
ILE A 102
ARG A 106
ASP A  83
ASP A 110
 None
 1.40A 2qeoB-4o48A:
undetectable		 2qeoB-4o48A:
18.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ewu MAGNESIUM-CHELATASE
SUBUNIT CHLH,
CHLOROPLASTIC

(Arabidopsis
thaliana) 		PF02514
(CobN-Mg_chel) 		5 GLU A1110
ILE A1135
ARG A1136
ASP A1102
ASP A1184
 None
 0.95A 2qeoB-5ewuA:
undetectable		 2qeoB-5ewuA:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6h ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01039
(Carboxyl_trans)
PF08326
(ACC_central) 		5 GLU A2054
ARG A2166
ILE A2150
GLU A2204
ASP A2226
 None
 0.96A 2qeoB-5i6hA:
undetectable		 2qeoB-5i6hA:
6.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6i ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN,ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN,ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01039
(Carboxyl_trans)
PF08326
(ACC_central) 		5 GLU A2054
ARG A2166
ILE A2150
GLU A2204
ASP A2226
 None
 1.04A 2qeoB-5i6iA:
undetectable		 2qeoB-5i6iA:
5.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kis RHS2

(Yersinia
entomophaga) 		no annotation 5 GLU B 537
ARG B 539
ILE B 513
ASP B 639
GLU B 637
 None
 1.43A 2qeoB-5kisB:
undetectable		 2qeoB-5kisB:
9.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5la7 HEPARANASE

(Homo sapiens) 		PF03662
(Glyco_hydro_79n) 		5 GLU A 113
ILE A  73
ARG A  70
GLU A 143
ASP A  68
 None
 1.25A 2qeoB-5la7A:
undetectable		 2qeoB-5la7A:
13.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nj8 ARYL HYDROCARBON
RECEPTOR
ARYL HYDROCARBON
RECEPTOR NUCLEAR
TRANSLOCATOR

(Homo sapiens) 		PF00010
(HLH)
PF00989
(PAS) 		5 GLU B  98
ILE B  97
ARG B 101
HIS B  94
ASP A  65
 None
 1.37A 2qeoB-5nj8B:
undetectable		 2qeoB-5nj8B:
18.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5udb DNA REPLICATION
LICENSING FACTOR
MCM2
DNA REPLICATION
LICENSING FACTOR
MCM6

(Saccharomyces
cerevisiae) 		PF00493
(MCM)
PF14551
(MCM_N)
PF17207
(MCM_OB) 		5 GLU 6 801
ILE 6 804
ARG 6 805
HIS 2 703
ASP 6 710
 None
 1.49A 2qeoB-5udb6:
undetectable		 2qeoB-5udb6:
9.25