SIMILAR PATTERNS OF AMINO ACIDS FOR 2OWW_A_ACRA600_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bpl ALPHA-1,4-GLUCAN-4-G
LUCANOHYDROLASE


(Bacillus
licheniformis)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  56
ASP B 231
HIS B 327
ASP B 328
TRP A  13
None
0.97A 2owwA-1bplA:
3.5
2owwA-1bplA:
16.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1e43 ALPHA-AMYLASE

(Bacillus
amyloliquefaciens)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  54
ASP A 231
HIS A 327
ASP A 328
TRP A  11
None
1.05A 2owwA-1e43A:
13.5
2owwA-1e43A:
22.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1fp9 4-ALPHA-GLUCANOTRANS
FERASE


(Thermus
thermophilus)
PF02446
(Glyco_hydro_77)
8 SER A  57
TYR A  59
ASP A 293
HIS A 394
ASP A 395
ASN A 464
PRO A 466
TRP A 473
None
0.36A 2owwA-1fp9A:
59.0
2owwA-1fp9A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1fp9 4-ALPHA-GLUCANOTRANS
FERASE


(Thermus
thermophilus)
PF02446
(Glyco_hydro_77)
5 SER A  57
TYR A  59
GLN A  60
ASP A 293
TRP A 473
None
0.63A 2owwA-1fp9A:
59.0
2owwA-1fp9A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1fp9 4-ALPHA-GLUCANOTRANS
FERASE


(Thermus
thermophilus)
PF02446
(Glyco_hydro_77)
6 TYR A  59
TRP A 258
ASP A 293
HIS A 394
ASP A 395
PRO A 466
None
0.76A 2owwA-1fp9A:
59.0
2owwA-1fp9A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jae ALPHA-AMYLASE

(Tenebrio
molitor)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
6 TYR A  60
GLN A  61
ASP A 185
HIS A 286
ASP A 287
TRP A  56
None
0.91A 2owwA-1jaeA:
3.4
2owwA-1jaeA:
20.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jxk ALPHA-AMYLASE,
SALIVARY


(Homo sapiens)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
6 TYR A  62
GLN A  63
ASP A 197
HIS A 299
ASP A 300
TRP A  58
None
1.02A 2owwA-1jxkA:
13.4
2owwA-1jxkA:
22.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kxh ALPHA-AMYLASE

(Pseudoalteromonas
haloplanktis)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
5 TYR A  50
GLN A  51
HIS A 263
ASP A 264
TRP A  46
ACR  A 598 (-4.5A)
ACR  A 598 (-3.7A)
None
ACR  A 598 (-3.1A)
None
0.90A 2owwA-1kxhA:
13.1
2owwA-1kxhA:
21.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mwo ALPHA AMYLASE

(Pyrococcus
woesei)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  62
ASP A 198
HIS A 288
ASP A 289
TRP A  18
None
ZN  A 441 ( 4.2A)
None
ZN  A 441 (-4.0A)
None
0.96A 2owwA-1mwoA:
17.5
2owwA-1mwoA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ose PORCINE
ALPHA-AMYLASE


(Sus scrofa)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
6 TYR A  62
GLN A  63
ASP A 197
HIS A 299
ASP A 300
TRP A  58
AC1  A 992 ( 3.6A)
GLC  A 991 ( 3.7A)
AC1  A 992 ( 3.3A)
AC1  A 992 ( 3.9A)
AC1  A 992 (-3.0A)
None
0.97A 2owwA-1oseA:
13.4
2owwA-1oseA:
23.22
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tz7 4-ALPHA-GLUCANOTRANS
FERASE


(Aquifex
aeolicus)
PF02446
(Glyco_hydro_77)
10 SER A  56
TYR A  58
GLN A 249
TRP A 251
ASP A 286
HIS A 384
ASP A 385
ASN A 450
PRO A 452
TRP A 459
None
0.64A 2owwA-1tz7A:
52.4
2owwA-1tz7A:
46.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ua7 ALPHA-AMYLASE

(Bacillus
subtilis)
PF00128
(Alpha-amylase)
6 TYR A  62
GLN A  63
ASP A 176
HIS A 268
ASP A 269
TRP A  58
ACI  A 504 ( 3.7A)
GLC  A 503 ( 3.9A)
ACI  A 504 (-3.0A)
ACI  A 504 (-3.8A)
ACI  A 504 ( 2.8A)
None
0.89A 2owwA-1ua7A:
3.5
2owwA-1ua7A:
19.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ud3 AMYLASE

(Bacillus sp.
KSM-K38)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  56
ASP A 231
HIS A 327
ASP A 328
TRP A  13
None
1.03A 2owwA-1ud3A:
14.9
2owwA-1ud3A:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vjs ALPHA-AMYLASE

(Bacillus
licheniformis)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  56
ASP A 231
HIS A 327
ASP A 328
TRP A  13
None
0.93A 2owwA-1vjsA:
12.7
2owwA-1vjsA:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w9x ALPHA AMYLASE

(Bacillus
halmapalus)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  58
ASP A 236
HIS A 332
ASP A 333
TRP A  15
AC1  A1492 ( 3.9A)
AC1  A1492 (-3.0A)
AC1  A1492 (-3.9A)
AC1  A1492 ( 3.0A)
None
0.98A 2owwA-1w9xA:
14.8
2owwA-1w9xA:
22.24
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1x1n 4-ALPHA-GLUCANOTRANS
FERASE


(Solanum
tuberosum)
PF02446
(Glyco_hydro_77)
6 SER A  82
TYR A  84
ASP A 241
HIS A 420
ASN A 485
TRP A 494
GOL  A1001 ( 4.5A)
GOL  A1001 ( 3.8A)
None
GOL  A1001 (-4.0A)
GOL  A1001 (-4.4A)
None
1.47A 2owwA-1x1nA:
48.3
2owwA-1x1nA:
43.58
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1x1n 4-ALPHA-GLUCANOTRANS
FERASE


(Solanum
tuberosum)
PF02446
(Glyco_hydro_77)
8 SER A  82
TYR A  84
ASP A 321
HIS A 420
ASP A 421
ASN A 485
PRO A 487
TRP A 494
GOL  A1001 ( 4.5A)
GOL  A1001 ( 3.8A)
GOL  A1001 (-4.9A)
GOL  A1001 (-4.0A)
GOL  A1001 (-2.6A)
GOL  A1001 (-4.4A)
None
None
0.76A 2owwA-1x1nA:
48.3
2owwA-1x1nA:
43.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bxy MALTOOLIGOSYLTREHALO
SE TREHALOHYDROLASE


(Deinococcus
radiodurans)
PF00128
(Alpha-amylase)
PF02922
(CBM_48)
PF11941
(DUF3459)
5 TYR A 177
ASP A 275
HIS A 399
ASP A 400
TRP A 175
None
0.93A 2owwA-2bxyA:
19.7
2owwA-2bxyA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2d3l GLUCAN
1,4-ALPHA-MALTOHEXAO
SIDASE


(Bacillus sp.
707)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  58
ASP A 236
HIS A 332
ASP A 333
TRP A  15
GLC  A 605 (-4.8A)
None
None
GLC  A 605 (-3.5A)
None
0.95A 2owwA-2d3lA:
15.3
2owwA-2d3lA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2die AMYLASE

(Bacillus sp.
(in: Bacteria))
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  58
ASP A 236
HIS A 332
ASP A 333
TRP A  15
None
1.01A 2owwA-2dieA:
15.0
2owwA-2dieA:
20.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qps ALPHA-AMYLASE TYPE A
ISOZYME


(Hordeum vulgare)
PF00128
(Alpha-amylase)
PF07821
(Alpha-amyl_C2)
5 TYR A  52
ASP A 180
HIS A 290
ASP A 291
TRP A  10
None
0.87A 2owwA-2qpsA:
14.0
2owwA-2qpsA:
21.58
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2x1i 4-ALPHA-GLUCANOTRANS
FERASE


(Thermus
brockianus)
PF02446
(Glyco_hydro_77)
8 SER A  57
TYR A  59
ASP A 293
HIS A 394
ASP A 395
ASN A 464
PRO A 466
TRP A 473
None
0.45A 2owwA-2x1iA:
59.7
2owwA-2x1iA:
86.80
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2x1i 4-ALPHA-GLUCANOTRANS
FERASE


(Thermus
brockianus)
PF02446
(Glyco_hydro_77)
7 SER A  57
TYR A  59
TRP A 258
HIS A 394
ASP A 395
PRO A 466
TRP A 473
None
0.68A 2owwA-2x1iA:
59.7
2owwA-2x1iA:
86.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bc9 ALPHA AMYLASE,
CATALYTIC REGION


(Halothermothrix
orenii)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A 184
ASP A 350
HIS A 446
ASP A 447
TRP A 131
ACI  A 806 ( 4.0A)
ACI  A 806 (-3.1A)
ACI  A 806 (-4.1A)
ACI  A 806 (-2.9A)
None
0.98A 2owwA-3bc9A:
14.2
2owwA-3bc9A:
23.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dhu ALPHA-AMYLASE

(Lactobacillus
plantarum)
PF00128
(Alpha-amylase)
6 SER A  65
TYR A  67
TRP A 137
ASP A 171
HIS A 276
ASP A 277
None
0.62A 2owwA-3dhuA:
23.5
2owwA-3dhuA:
21.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h7l ENDOGLUCANASE

(Vibrio
parahaemolyticus)
PF00759
(Glyco_hydro_9)
PF02927
(CelD_N)
5 SER A 142
GLN A 110
ASP A 492
ASP A 500
PRO A 503
None
1.31A 2owwA-3h7lA:
undetectable
2owwA-3h7lA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k1d 1,4-ALPHA-GLUCAN-BRA
NCHING ENZYME


(Mycobacterium
tuberculosis)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48)
6 TYR A 306
GLN A 307
ASP A 411
HIS A 531
ASP A 532
TRP A 304
None
1.19A 2owwA-3k1dA:
4.6
2owwA-3k1dA:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3oky PLEXIN-A2

(Mus musculus)
PF01403
(Sema)
PF01437
(PSI)
5 TYR A 276
GLN A 343
GLN A 311
HIS A 347
PRO A 349
None
1.20A 2owwA-3okyA:
undetectable
2owwA-3okyA:
21.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vm5 ALPHA-AMYLASE

(Oryzias latipes)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
6 TYR A  62
GLN A  63
ASP A 197
HIS A 299
ASP A 300
TRP A  58
None
0.95A 2owwA-3vm5A:
13.2
2owwA-3vm5A:
20.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4amc GLUCANSUCRASE

(Lactobacillus
reuteri)
PF01473
(CW_binding_1)
PF02324
(Glyco_hydro_70)
5 TYR A1470
ASP A1024
HIS A1132
ASP A1133
ASN A1416
None
1.37A 2owwA-4amcA:
undetectable
2owwA-4amcA:
17.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lq1 1,4-ALPHA-GLUCAN
BRANCHING ENZYME
GLGB


(Escherichia
coli)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48)
6 TYR A 300
GLN A 301
ASP A 405
HIS A 525
ASP A 526
TRP A 298
None
1.15A 2owwA-4lq1A:
15.2
2owwA-4lq1A:
22.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4s3p 4-ALPHA-GLUCANOTRANS
FERASE


(Escherichia
coli)
PF02446
(Glyco_hydro_77)
5 SER A 199
TYR A 201
ASP A 448
HIS A 547
TRP A 659
None
1.00A 2owwA-4s3pA:
34.1
2owwA-4s3pA:
23.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4s3p 4-ALPHA-GLUCANOTRANS
FERASE


(Escherichia
coli)
PF02446
(Glyco_hydro_77)
7 SER A 199
TYR A 201
HIS A 547
ASP A 548
ASN A 648
PRO A 650
TRP A 659
None
0.32A 2owwA-4s3pA:
34.1
2owwA-4s3pA:
23.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4s3p 4-ALPHA-GLUCANOTRANS
FERASE


(Escherichia
coli)
PF02446
(Glyco_hydro_77)
6 SER A 199
TYR A 201
TRP A 413
HIS A 547
ASP A 548
TRP A 659
None
0.67A 2owwA-4s3pA:
34.1
2owwA-4s3pA:
23.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uzu ALPHA-AMYLASE

(Geobacillus
stearothermophilus)
PF00128
(Alpha-amylase)
PF09154
(DUF1939)
5 TYR A  57
ASP A 232
HIS A 328
ASP A 329
TRP A  14
None
NA  A1490 (-2.9A)
None
NA  A1490 ( 4.5A)
None
0.97A 2owwA-4uzuA:
14.6
2owwA-4uzuA:
22.51
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5csu 4-ALPHA-GLUCANOTRANS
FERASE DPE1,
CHLOROPLASTIC/AMYLOP
LASTIC


(Arabidopsis
thaliana)
PF02446
(Glyco_hydro_77)
10 SER A 134
TYR A 136
GLN A 336
TRP A 338
ASP A 373
HIS A 472
ASP A 473
ASN A 537
PRO A 539
TRP A 546
GLC  A 605 ( 2.8A)
HMC  A 606 ( 4.0A)
AGL  A 607 ( 3.6A)
HMC  A 606 ( 3.6A)
HMC  A 606 ( 3.0A)
HMC  A 606 ( 3.8A)
HMC  A 606 ( 2.8A)
GLC  A 605 ( 3.7A)
GLC  A 605 ( 3.6A)
None
0.52A 2owwA-5csuA:
50.0
2owwA-5csuA:
38.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dgq PUTATIVE
ENDOGLUCANASE-RELATE
D PROTEIN


(Photobacterium
profundum)
PF00759
(Glyco_hydro_9)
5 SER A 141
GLN A 109
ASP A 500
ASP A 508
PRO A 511
None
1.38A 2owwA-5dgqA:
undetectable
2owwA-5dgqA:
24.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gr1 1,4-ALPHA-GLUCAN
BRANCHING ENZYME
GLGB


(Cyanothece sp.
ATCC 51142)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48)
5 TYR A 329
GLN A 330
ASP A 434
HIS A 554
ASP A 555
None
None
MG  A 826 (-4.2A)
None
None
0.76A 2owwA-5gr1A:
11.0
2owwA-5gr1A:
20.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gr1 1,4-ALPHA-GLUCAN
BRANCHING ENZYME
GLGB


(Cyanothece sp.
ATCC 51142)
PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48)
5 TYR A 329
GLN A 330
HIS A 554
ASP A 555
TRP A 327
None
1.01A 2owwA-5gr1A:
11.0
2owwA-5gr1A:
20.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jjh 4-ALPHA-GLUCANOTRANS
FERASE


(Corynebacterium
glutamicum)
PF02446
(Glyco_hydro_77)
8 SER A 233
TYR A 235
ASP A 460
HIS A 560
ASP A 561
ASN A 661
PRO A 663
TRP A 673
None
None
None
None
None
SO4  A 803 (-3.0A)
SO4  A 803 (-3.8A)
None
0.58A 2owwA-5jjhA:
33.0
2owwA-5jjhA:
24.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jjh 4-ALPHA-GLUCANOTRANS
FERASE


(Corynebacterium
glutamicum)
PF02446
(Glyco_hydro_77)
5 SER A 233
TYR A 235
GLN A 423
TRP A 425
TRP A 673
None
0.73A 2owwA-5jjhA:
33.0
2owwA-5jjhA:
24.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jjh 4-ALPHA-GLUCANOTRANS
FERASE


(Corynebacterium
glutamicum)
PF02446
(Glyco_hydro_77)
8 SER A 233
TYR A 235
TRP A 425
ASP A 460
HIS A 560
ASP A 561
ASN A 661
TRP A 673
None
None
None
None
None
None
SO4  A 803 (-3.0A)
None
0.72A 2owwA-5jjhA:
33.0
2owwA-5jjhA:
24.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f8z ALPHA-1,2-MANNOSIDAS
E, PUTATIVE


(Bacteroides
thetaiotaomicron)
no annotation 5 GLN A 456
TRP A 445
HIS A 404
ASP A 469
ASN A 403
None
1.33A 2owwA-6f8zA:
undetectable
2owwA-6f8zA:
8.80