SIMILAR PATTERNS OF AMINO ACIDS FOR 2OMB_A_IPHA2001

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ek6 UDP-GALACTOSE
4-EPIMERASE

(Homo sapiens) 		PF16363
(GDP_Man_Dehyd) 		4 HIS A 148
PRO A 139
TYR A 141
TYR A 308
 None
 1.36A 2ombA-1ek6A:
undetectable
2ombB-1ek6A:
undetectable		 2ombA-1ek6A:
22.22
2ombB-1ek6A:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1f3r FV ANTIBODY FRAGMENT

(Rattus
norvegicus) 		PF07686
(V-set) 		5 HIS B  39
PRO B  45
TYR B  94
TYR B 174
PRO B 182
 None
 1.37A 2ombA-1f3rB:
11.8
2ombB-1f3rB:
11.9		 2ombA-1f3rB:
26.05
2ombB-1f3rB:
26.05
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1fn4 MONOCLONAL ANTIBODY
AGAINST
ACETYLCHOLINE
RECEPTOR
MONOCLONAL ANTIBODY
AGAINST
ACETYLCHOLINE
RECEPTOR

(Rattus
norvegicus;
Rattus
norvegicus) 		PF07654
(C1-set)
PF07686
(V-set)
PF07654
(C1-set)
PF07686
(V-set) 		4 HIS B  39
PRO B  45
TYR B  91
TYR A  36
 None
 0.81A 2ombA-1fn4B:
18.0
2ombB-1fn4B:
5.5		 2ombA-1fn4B:
31.36
2ombB-1fn4B:
31.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ro5 AUTOINDUCER
SYNTHESIS PROTEIN
LASI

(Pseudomonas
aeruginosa) 		PF00765
(Autoind_synth) 		4 HIS A  20
TYR A  53
TYR A  46
PRO A  51
 None
 1.44A 2ombA-1ro5A:
undetectable
2ombB-1ro5A:
undetectable		 2ombA-1ro5A:
21.93
2ombB-1ro5A:
21.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wdt ELONGATION FACTOR G
HOMOLOG

(Thermus
thermophilus) 		PF00009
(GTP_EFTU)
PF00679
(EFG_C)
PF03764
(EFG_IV)
PF14492
(EFG_II) 		4 HIS A 327
PRO A 326
TYR A 329
PRO A 351
 None
 1.03A 2ombA-1wdtA:
undetectable
2ombB-1wdtA:
undetectable		 2ombA-1wdtA:
15.53
2ombB-1wdtA:
15.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xje RIBONUCLEOTIDE
REDUCTASE,
B12-DEPENDENT

(Thermotoga
maritima) 		PF00317
(Ribonuc_red_lgN)
PF02867
(Ribonuc_red_lgC) 		4 HIS A 428
TYR A 449
TYR A 307
PRO A 309
 None
 1.26A 2ombA-1xjeA:
undetectable
2ombB-1xjeA:
undetectable		 2ombA-1xjeA:
16.14
2ombB-1xjeA:
16.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gmi UBIQUITIN-CONJUGATIN
G ENZYME E2 13

(Saccharomyces
cerevisiae) 		PF00179
(UQ_con) 		4 HIS A  77
PRO A  78
TYR A  47
PRO A  46
 None
 1.43A 2ombA-2gmiA:
undetectable
2ombB-2gmiA:
undetectable		 2ombA-2gmiA:
21.52
2ombB-2gmiA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hor ALLIIN LYASE 1

(Allium sativum) 		PF04863
(EGF_alliinase)
PF04864
(Alliinase_C) 		4 HIS A 232
PRO A 231
TYR A 233
TYR A 229
 None
 1.18A 2ombA-2horA:
undetectable
2ombB-2horA:
undetectable		 2ombA-2horA:
19.71
2ombB-2horA:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jgz G2/MITOTIC-SPECIFIC
CYCLIN-B1

(Homo sapiens) 		PF00134
(Cyclin_N)
PF02984
(Cyclin_C) 		4 HIS B 304
PRO B 300
TYR B 175
TYR B 177
 None
 1.48A 2ombA-2jgzB:
undetectable
2ombB-2jgzB:
undetectable		 2ombA-2jgzB:
22.18
2ombB-2jgzB:
22.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jky HYPOXANTHINE-GUANINE
PHOSPHORIBOSYLTRANSF
ERASE

(Saccharomyces
cerevisiae) 		PF00156
(Pribosyltran) 		4 PRO A  43
TYR A  11
TYR A 191
PRO A 192
 None
None
5GP  A 300 (-4.6A)
None
 1.26A 2ombA-2jkyA:
undetectable
2ombB-2jkyA:
undetectable		 2ombA-2jkyA:
22.45
2ombB-2jkyA:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vp3 VP39

(Vaccinia virus) 		PF01358
(PARP_regulatory) 		4 HIS A 262
PRO A 199
TYR A 258
TYR A 260
 None
 1.25A 2ombA-2vp3A:
undetectable
2ombB-2vp3A:
undetectable		 2ombA-2vp3A:
19.76
2ombB-2vp3A:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yev CYTOCHROME C OXIDASE
POLYPEPTIDE I+III

(Thermus
thermophilus) 		PF00115
(COX1)
PF00510
(COX3) 		4 PRO A 407
TYR A 404
TYR A 403
PRO A 346
 None
 1.43A 2ombA-2yevA:
undetectable
2ombB-2yevA:
undetectable		 2ombA-2yevA:
14.27
2ombB-2yevA:
14.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2z5d UBIQUITIN-CONJUGATIN
G ENZYME E2 H

(Homo sapiens) 		PF00179
(UQ_con) 		4 HIS A  95
PRO A  96
TYR A  65
PRO A  64
 None
 1.44A 2ombA-2z5dA:
undetectable
2ombB-2z5dA:
undetectable		 2ombA-2z5dA:
21.52
2ombB-2z5dA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zt9 CYTOCHROME B6
CYTOCHROME B6-F
COMPLEX SUBUNIT 4

(Nostoc sp. PCC
7120;
Nostoc sp. PCC
7120) 		PF00033
(Cytochrome_B)
PF00032
(Cytochrom_B_C) 		4 HIS B  24
PRO A 214
TYR B  27
PRO B   7
 None
 1.50A 2ombA-2zt9B:
undetectable
2ombB-2zt9B:
undetectable		 2ombA-2zt9B:
19.81
2ombB-2zt9B:
19.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h11 CASP8 AND FADD-LIKE
APOPTOSIS REGULATOR

(Homo sapiens) 		PF00656
(Peptidase_C14) 		4 HIS A 302
TYR A 305
TYR A 276
PRO A 250
 None
 1.37A 2ombA-3h11A:
undetectable
2ombB-3h11A:
undetectable		 2ombA-3h11A:
22.94
2ombB-3h11A:
22.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hmu AMINOTRANSFERASE,
CLASS III

(Ruegeria
pomeroyi) 		PF00202
(Aminotran_3) 		4 HIS A 326
PRO A 327
TYR A 323
TYR A  88
 None
 1.46A 2ombA-3hmuA:
undetectable
2ombB-3hmuA:
undetectable		 2ombA-3hmuA:
15.93
2ombB-3hmuA:
15.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lgg ADENOSINE DEAMINASE
CECR1

(Homo sapiens) 		PF00962
(A_deaminase)
PF08451
(A_deaminase_N) 		4 HIS A 107
PRO A 106
TYR A 194
PRO A 196
 None
 1.29A 2ombA-3lggA:
undetectable
2ombB-3lggA:
undetectable		 2ombA-3lggA:
19.26
2ombB-3lggA:
19.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3omz HUMAN VDELTA1 GAMMA
DELTA T CELL
RECEPTOR DELTA1A/B-3

(Homo sapiens) 		PF07686
(V-set) 		4 HIS A  39
PRO A  45
TYR A  95
TYR A 172
 None
 1.17A 2ombA-3omzA:
11.6
2ombB-3omzA:
11.4		 2ombA-3omzA:
26.36
2ombB-3omzA:
26.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gpr UBIQUITIN-CONJUGATIN
G ENZYME FAMILY
PROTEIN

(Entamoeba
histolytica) 		PF00179
(UQ_con) 		4 HIS A  75
PRO A 113
TYR A  45
PRO A  40
 None
 1.50A 2ombA-4gprA:
undetectable
2ombB-4gprA:
undetectable		 2ombA-4gprA:
23.18
2ombB-4gprA:
23.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hz9 PUTATIVE CYTOPLASMIC
PROTEIN

(Ralstonia
pickettii) 		no annotation 4 HIS A  81
TYR A 106
TYR A 113
PRO A 111
 None
 1.29A 2ombA-4hz9A:
undetectable
2ombB-4hz9A:
undetectable		 2ombA-4hz9A:
19.23
2ombB-4hz9A:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ii2 UBIQUITIN-CONJUGATIN
G ENZYME E2 4

(Schizosaccharomyces
pombe) 		PF00179
(UQ_con) 		4 HIS C  75
PRO C  76
TYR C  45
PRO C  44
 None
 1.50A 2ombA-4ii2C:
undetectable
2ombB-4ii2C:
undetectable		 2ombA-4ii2C:
22.12
2ombB-4ii2C:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ii2 UBIQUITIN-CONJUGATIN
G ENZYME E2 4

(Schizosaccharomyces
pombe) 		PF00179
(UQ_con) 		4 PRO C  44
TYR C 127
TYR C  74
PRO C  76
 None
 1.50A 2ombA-4ii2C:
undetectable
2ombB-4ii2C:
undetectable		 2ombA-4ii2C:
22.12
2ombB-4ii2C:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lhu 9C2 TCR DELTA CHAIN
9C2 TCR GAMMA CHAIN

(Homo sapiens;
Homo sapiens) 		PF07654
(C1-set)
PF07686
(V-set)
PF07654
(C1-set)
PF07686
(V-set) 		4 HIS G  41
PRO G  47
TYR G  97
TYR D  40
 None
 1.06A 2ombA-4lhuG:
17.7
2ombB-4lhuG:
13.6		 2ombA-4lhuG:
29.64
2ombB-4lhuG:
29.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mng TRA@ PROTEIN,TRA@
PROTEIN, TI ANTIGEN
CD3-ASSOCIATED
PROTEIN GAMMA CHAIN
V-J-C REGION

(Homo sapiens) 		PF07686
(V-set) 		4 HIS E 177
PRO E 183
TYR E 233
TYR E  37
 None
 1.12A 2ombA-4mngE:
13.7
2ombB-4mngE:
13.5		 2ombA-4mngE:
24.16
2ombB-4mngE:
24.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4q3k MGS-M1

(unidentified) 		PF00326
(Peptidase_S9)
PF07859
(Abhydrolase_3) 		4 HIS A 117
PRO A 150
TYR A  44
PRO A  82
 None
 1.10A 2ombA-4q3kA:
undetectable
2ombB-4q3kA:
undetectable		 2ombA-4q3kA:
22.78
2ombB-4q3kA:
22.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r8p E3 UBIQUITIN-PROTEIN
LIGASE RING2,
UBIQUITIN-CONJUGATIN
G ENZYME E2 D3

(Homo sapiens) 		PF00179
(UQ_con)
PF13923
(zf-C3HC4_2) 		4 HIS L 275
PRO L 276
TYR L 245
PRO L 244
 None
 1.44A 2ombA-4r8pL:
undetectable
2ombB-4r8pL:
undetectable		 2ombA-4r8pL:
22.96
2ombB-4r8pL:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r8p E3 UBIQUITIN-PROTEIN
LIGASE RING2,
UBIQUITIN-CONJUGATIN
G ENZYME E2 D3

(Homo sapiens) 		PF00179
(UQ_con)
PF13923
(zf-C3HC4_2) 		4 HIS L 275
PRO L 313
TYR L 334
PRO L 244
 None
 1.50A 2ombA-4r8pL:
undetectable
2ombB-4r8pL:
undetectable		 2ombA-4r8pL:
22.96
2ombB-4r8pL:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4x57 UBIQUITIN-CONJUGATIN
G ENZYME E2 8

(Arabidopsis
thaliana) 		PF00179
(UQ_con) 		4 HIS A  75
PRO A  76
TYR A  45
PRO A  44
 None
 1.48A 2ombA-4x57A:
undetectable
2ombB-4x57A:
undetectable		 2ombA-4x57A:
20.00
2ombB-4x57A:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ev7 CONSERVED DOMAIN
PROTEIN

(Bacillus
anthracis) 		PF13402
(Peptidase_M60)
PF17291
(M60-like_N) 		4 PRO A 109
TYR A 254
TYR A 130
PRO A  71
 None
 0.89A 2ombA-5ev7A:
undetectable
2ombB-5ev7A:
undetectable		 2ombA-5ev7A:
17.56
2ombB-5ev7A:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kja APOCAROTENOID-15,15'
-OXYGENASE

(Synechocystis
sp. PCC 6803) 		PF03055
(RPE65) 		4 HIS A 478
PRO A 480
TYR A 448
TYR A  24
 None
 1.15A 2ombA-5kjaA:
undetectable
2ombB-5kjaA:
undetectable		 2ombA-5kjaA:
18.11
2ombB-5kjaA:
18.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m0o TERMINAL
OLEFIN-FORMING FATTY
ACID DECARBOXYLASE

(Jeotgalicoccus
sp. ATCC 8456) 		PF00067
(p450) 		4 HIS A 259
TYR A 289
TYR A 405
PRO A 290
 None
 1.48A 2ombA-5m0oA:
undetectable
2ombB-5m0oA:
undetectable		 2ombA-5m0oA:
17.97
2ombB-5m0oA:
17.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nns GLYCOSYL HYDROLASE
FAMILY 61, 2 PROTEIN

(Heterobasidion
irregulare) 		no annotation 4 HIS A  80
PRO A  79
TYR A 167
TYR A  36
 CU  A 303 ( 3.3A)
None
None
None
 1.09A 2ombA-5nnsA:
2.4
2ombB-5nnsA:
4.1		 2ombA-5nnsA:
undetectable
2ombB-5nnsA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nz7 CELLODEXTRIN
PHOSPHORYLASE

(Ruminiclostridium
thermocellum) 		PF06165
(Glyco_transf_36)
PF17167
(Glyco_hydro_36) 		4 HIS A 128
PRO A 869
TYR A 142
PRO A 137
 None
 1.49A 2ombA-5nz7A:
undetectable
2ombB-5nz7A:
undetectable		 2ombA-5nz7A:
11.58
2ombB-5nz7A:
11.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u0u DH270.1 SINGLE-CHAIN
VARIABLE FRAGMENT

(Homo sapiens) 		no annotation 4 PRO G  45
TYR G  95
TYR G 177
PRO G 185
 None
 1.30A 2ombA-5u0uG:
21.5
2ombB-5u0uG:
21.0		 2ombA-5u0uG:
26.36
2ombB-5u0uG:
26.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xpg UNCHARACTERIZED
PROTEIN

(Thermus
thermophilus) 		no annotation 4 HIS A 607
PRO A 614
TYR A 582
PRO A 583
 SO4  A 701 (-4.1A)
None
None
None
 1.32A 2ombA-5xpgA:
undetectable
2ombB-5xpgA:
undetectable		 2ombA-5xpgA:
undetectable
2ombB-5xpgA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ze8 CYTOCHROME C552

(Thermochromatium
tepidum) 		no annotation 4 HIS A 342
PRO A 343
TYR A 403
PRO A 425
 None
 1.25A 2ombA-5ze8A:
4.5
2ombB-5ze8A:
4.0		 2ombA-5ze8A:
undetectable
2ombB-5ze8A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cp2 -

(-) 		no annotation 4 PRO B  45
TYR B 129
TYR B  75
PRO B  77
 None
 1.18A 2ombA-6cp2B:
undetectable
2ombB-6cp2B:
undetectable		 2ombA-6cp2B:
undetectable
2ombB-6cp2B:
undetectable