SIMILAR PATTERNS OF AMINO ACIDS FOR 2OA1_A_TRPA2002

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jp4 3'(2'),5'-BISPHOSPHA
TE NUCLEOTIDASE

(Rattus
norvegicus) 		PF00459
(Inositol_P) 		5 PRO A 269
ILE A 265
TYR A 272
GLU A 252
ASN A 280
 None
 1.32A 2oa1A-1jp4A:
0.2		 2oa1A-1jp4A:
20.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qmv PEROXIREDOXIN-2

(Homo sapiens) 		PF00578
(AhpC-TSA)
PF10417
(1-cysPrx_C) 		5 ILE A  55
PRO A  52
ILE A  87
HIS A  83
PHE A  41
 None
 1.35A 2oa1A-1qmvA:
1.8		 2oa1A-1qmvA:
17.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pyx TRYPTOPHAN
HALOGENASE

(Shewanella
frigidimarina) 		PF04820
(Trp_halogenase) 		5 PRO A  63
LYS A  88
HIS A 110
PHE A 112
GLU A 360
 None
 0.55A 2oa1A-2pyxA:
43.9		 2oa1A-2pyxA:
27.61
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2weu TRYPTOPHAN
5-HALOGENASE

(Streptomyces
rugosporus) 		PF04820
(Trp_halogenase) 		5 LYS A  75
ILE A  78
HIS A  92
PHE A  94
GLU A 354
 TRP  A1512 ( 3.7A)
TRP  A1512 ( 4.6A)
TRP  A1512 (-3.2A)
TRP  A1512 (-3.9A)
TRP  A1512 (-4.4A)
 0.20A 2oa1A-2weuA:
47.1		 2oa1A-2weuA:
37.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bwn L-TRYPTOPHAN
AMINOTRANSFERASE

(Arabidopsis
thaliana) 		PF04864
(Alliinase_C) 		5 ILE A 218
ILE A  77
HIS A  81
PHE A 280
ASN A  86
 None
 1.37A 2oa1A-3bwnA:
1.1		 2oa1A-3bwnA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e1t HALOGENASE

(Chondromyces
crocatus) 		PF04820
(Trp_halogenase) 		5 PRO A  52
LYS A  76
ILE A 210
PHE A  94
PHE A 358
 None
 1.16A 2oa1A-3e1tA:
33.1		 2oa1A-3e1tA:
25.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ga3 INTERFERON-INDUCED
HELICASE C
DOMAIN-CONTAINING
PROTEIN 1, MDA5

(Homo sapiens) 		PF11648
(RIG-I_C-RD) 		5 ILE A1008
PRO A 900
ILE A 984
HIS A 928
PHE A1010
 None
 1.42A 2oa1A-3ga3A:
undetectable		 2oa1A-3ga3A:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ap5 GDP-FUCOSE PROTEIN
O-FUCOSYLTRANSFERASE
2

(Homo sapiens) 		PF10250
(O-FucT) 		5 ILE A 267
PRO A 268
ILE A 399
GLU A 396
TRP A 373
 None
 1.37A 2oa1A-4ap5A:
0.8		 2oa1A-4ap5A:
23.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hym TOPOISOMERASE IV,
SUBUNIT B

(Francisella
tularensis) 		PF00204
(DNA_gyraseB)
PF02518
(HATPase_c) 		5 ILE A 270
PRO A 271
HIS A  33
GLU A  37
PHE A 328
 None
 1.22A 2oa1A-4hymA:
0.4		 2oa1A-4hymA:
19.96
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4lu6 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE REBH

(Lechevalieria
aerocolonigenes) 		PF04820
(Trp_halogenase) 		6 HIS A 109
GLU A 357
TYR A 455
PHE A 465
TRP A 466
ASN A 470
 None
 1.40A 2oa1A-4lu6A:
61.6		 2oa1A-4lu6A:
98.55
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4lu6 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE REBH

(Lechevalieria
aerocolonigenes) 		PF04820
(Trp_halogenase) 		11 ILE A  52
PRO A  53
LYS A  79
ILE A  82
HIS A 109
PHE A 111
GLU A 357
TYR A 454
PHE A 465
TRP A 466
ASN A 470
 None
 0.37A 2oa1A-4lu6A:
61.6		 2oa1A-4lu6A:
98.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4my5 PUTATIVE AMINO ACID
AMINOTRANSFERASE

(Streptococcus
mutans) 		PF00155
(Aminotran_1_2) 		5 ILE A 327
PRO A 328
ILE A 366
PHE A 312
TYR A 389
 None
 1.41A 2oa1A-4my5A:
undetectable		 2oa1A-4my5A:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o87 N-TAGGED NUCLEASE

(Millerozyma
acaciae) 		no annotation 5 ILE A 127
ILE A  28
PHE A 145
TYR A  14
PHE A  40
 None
 1.40A 2oa1A-4o87A:
undetectable		 2oa1A-4o87A:
18.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ovt TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT

(Ochrobactrum
anthropi) 		PF03480
(DctP) 		5 PRO A 171
ILE A  88
TYR A 231
GLU A 208
ASN A 234
 LFC  A 403 (-4.0A)
LFC  A 403 (-3.9A)
None
None
LFC  A 403 ( 4.9A)
 1.47A 2oa1A-4ovtA:
undetectable		 2oa1A-4ovtA:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ovt TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT

(Ochrobactrum
anthropi) 		PF03480
(DctP) 		5 PRO A 171
LYS A  72
ILE A  88
GLU A 208
ASN A 234
 LFC  A 403 (-4.0A)
LFC  A 403 ( 2.8A)
LFC  A 403 (-3.9A)
None
LFC  A 403 ( 4.9A)
 1.35A 2oa1A-4ovtA:
undetectable		 2oa1A-4ovtA:
21.95
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4z43 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE PRNA

(Pseudomonas
fluorescens) 		PF04820
(Trp_halogenase) 		8 ILE A  52
LYS A  79
ILE A  82
HIS A 101
PHE A 103
GLU A 346
PHE A 454
ASN A 459
 None
 0.81A 2oa1A-4z43A:
52.9		 2oa1A-4z43A:
53.02
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4z43 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE PRNA

(Pseudomonas
fluorescens) 		PF04820
(Trp_halogenase) 		8 ILE A  52
PRO A  53
LYS A  79
ILE A  82
HIS A 101
PHE A 103
GLU A 346
ASN A 459
 None
 0.66A 2oa1A-4z43A:
52.9		 2oa1A-4z43A:
53.02
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4z43 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE PRNA

(Pseudomonas
fluorescens) 		PF04820
(Trp_halogenase) 		7 LYS A  79
ILE A  82
HIS A 101
GLU A 346
PHE A 454
TRP A 455
ASN A 459
 None
 0.71A 2oa1A-4z43A:
52.9		 2oa1A-4z43A:
53.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l94 CYTOCHROME P450

(Bacillus
megaterium) 		PF00067
(p450) 		5 PRO A 386
PHE A  23
GLU A 260
PHE A 382
TRP A 378
 None
 1.49A 2oa1A-5l94A:
undetectable		 2oa1A-5l94A:
20.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ta9 GLYCOSIDE HYDROLASE

(Bacteroides
uniformis) 		PF04616
(Glyco_hydro_43) 		5 ILE A 275
HIS A 302
GLU A 262
TYR A 376
PHE A 125
 None
GAL  A 501 (-3.9A)
GAL  A 501 (-2.7A)
None
GAL  A 501 (-4.7A)
 1.46A 2oa1A-5ta9A:
undetectable		 2oa1A-5ta9A:
23.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frl TRYPTOPHAN
HALOGENASE
SUPERFAMILY

(Brevundimonas
sp. BAL3) 		no annotation 7 ILE A  57
PRO A  58
LYS A  83
ILE A  86
HIS A 100
PHE A 102
GLU A 349
 None
 0.37A 2oa1A-6frlA:
43.3		 2oa1A-6frlA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frl TRYPTOPHAN
HALOGENASE
SUPERFAMILY

(Brevundimonas
sp. BAL3) 		no annotation 5 ILE A  57
PRO A  58
LYS A  83
PHE A 102
PHE A 443
 None
 1.04A 2oa1A-6frlA:
43.3		 2oa1A-6frlA:
undetectable