SIMILAR PATTERNS OF AMINO ACIDS FOR 2IDK_B_C2FB1420

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2c1c CARBOXYPEPTIDASE B

(Helicoverpa zea) 		PF00246
(Peptidase_M14) 		5 LEU A 191
SER A 243
TYR A 267
HIS A 259
TYR A 269
 None
 1.46A 2idkA-2c1cA:
0.0
2idkB-2c1cA:
0.0
2idkC-2c1cA:
0.5
2idkD-2c1cA:
0.1		 2idkA-2c1cA:
22.09
2idkB-2c1cA:
22.09
2idkC-2c1cA:
22.09
2idkD-2c1cA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2km6 NACHT, LRR AND PYD
DOMAINS-CONTAINING
PROTEIN 7

(Homo sapiens) 		PF02758
(PYRIN) 		5 LEU A  77
MET A  80
LEU A  85
MET A  88
THR A  14
 None
 1.28A 2idkA-2km6A:
undetectable
2idkB-2km6A:
undetectable
2idkC-2km6A:
undetectable
2idkD-2km6A:
undetectable		 2idkA-2km6A:
18.25
2idkB-2km6A:
18.25
2idkC-2km6A:
18.25
2idkD-2km6A:
18.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3m2t PROBABLE
DEHYDROGENASE

(Chromobacterium
violaceum) 		PF01408
(GFO_IDH_MocA) 		5 LEU A 152
MET A 236
SER A 313
HIS A 180
THR A 317
 None
None
None
NAD  A 358 (-4.6A)
None
 1.49A 2idkA-3m2tA:
0.7
2idkB-3m2tA:
0.1
2idkC-3m2tA:
1.1
2idkD-3m2tA:
2.1		 2idkA-3m2tA:
24.21
2idkB-3m2tA:
24.21
2idkC-3m2tA:
24.21
2idkD-3m2tA:
24.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wbz LIKELY HISTIDYL
TRNA-SPECIFIC
GUANYLYLTRANSFERASE

(Candida
albicans) 		PF04446
(Thg1)
PF14413
(Thg1C) 		5 LEU A 121
SER A 101
LEU A 126
TYR A 108
THR A 106
 None
 1.43A 2idkA-3wbzA:
0.8
2idkB-3wbzA:
0.6
2idkC-3wbzA:
0.4
2idkD-3wbzA:
0.6		 2idkA-3wbzA:
19.94
2idkB-3wbzA:
19.94
2idkC-3wbzA:
19.94
2idkD-3wbzA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fdd TRANSPORTIN-1

(Homo sapiens) 		PF03810
(IBN_N)
PF13513
(HEAT_EZ) 		5 LEU A 436
MET A 432
LEU A 439
HIS A 442
THR A 458
 None
 1.47A 2idkA-4fddA:
0.0
2idkB-4fddA:
0.0
2idkC-4fddA:
0.0
2idkD-4fddA:
0.2		 2idkA-4fddA:
15.75
2idkB-4fddA:
15.75
2idkC-4fddA:
15.75
2idkD-4fddA:
15.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rn3 HAD SUPERFAMILY
HYDROLASE

(Geobacter
sulfurreducens) 		PF13419
(HAD_2) 		5 LEU A 131
LEU A 126
MET A 122
TYR A  15
THR A 116
 None
 1.33A 2idkA-4rn3A:
0.6
2idkB-4rn3A:
0.5
2idkC-4rn3A:
0.6
2idkD-4rn3A:
0.5		 2idkA-4rn3A:
23.91
2idkB-4rn3A:
23.91
2idkC-4rn3A:
23.91
2idkD-4rn3A:
23.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tyh MITOGEN-ACTIVATED
PROTEIN KINASE 14

(Mus musculus) 		PF00069
(Pkinase) 		5 LEU B 236
SER B 254
TYR B 258
LEU B 232
HIS B 228
 None
 1.36A 2idkA-4tyhB:
1.2
2idkB-4tyhB:
1.2
2idkC-4tyhB:
0.0
2idkD-4tyhB:
1.3		 2idkA-4tyhB:
22.19
2idkB-4tyhB:
22.19
2idkC-4tyhB:
22.19
2idkD-4tyhB:
22.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xjn NUCLEOCAPSID

(Mammalian
rubulavirus 5) 		PF00973
(Paramyxo_ncap) 		5 LEU A 273
SER A 290
LEU A 277
TYR A 329
THR A 294
 None
 1.37A 2idkA-4xjnA:
0.0
2idkB-4xjnA:
0.0
2idkC-4xjnA:
0.0
2idkD-4xjnA:
0.0		 2idkA-4xjnA:
20.49
2idkB-4xjnA:
20.49
2idkC-4xjnA:
20.49
2idkD-4xjnA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4y1k OUTER MEMBRANE
PROTEIN OPRM

(Pseudomonas
aeruginosa) 		PF02321
(OEP) 		5 LEU A 256
SER A 160
LEU A 257
TYR A 165
THR A 163
 None
 1.49A 2idkA-4y1kA:
undetectable
2idkB-4y1kA:
1.6
2idkC-4y1kA:
0.0
2idkD-4y1kA:
0.0		 2idkA-4y1kA:
21.23
2idkB-4y1kA:
21.23
2idkC-4y1kA:
21.23
2idkD-4y1kA:
21.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aqa OFF7_DB04V3

(synthetic
construct) 		PF00023
(Ank)
PF12796
(Ank_2)
PF13354
(Beta-lactamase2) 		5 LEU A 323
SER A 365
LEU A 320
MET A 316
THR A 201
 None
 1.19A 2idkA-5aqaA:
0.0
2idkB-5aqaA:
0.0
2idkC-5aqaA:
0.0
2idkD-5aqaA:
0.1		 2idkA-5aqaA:
25.42
2idkB-5aqaA:
25.42
2idkC-5aqaA:
25.42
2idkD-5aqaA:
25.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jip CORTICAL-LYTIC
ENZYME

(Clostridium
perfringens) 		PF01183
(Glyco_hydro_25) 		5 LEU A 148
MET A 173
LEU A 112
HIS A  74
THR A 116
 None
 1.28A 2idkA-5jipA:
undetectable
2idkB-5jipA:
undetectable
2idkC-5jipA:
undetectable
2idkD-5jipA:
undetectable		 2idkA-5jipA:
18.87
2idkB-5jipA:
18.87
2idkC-5jipA:
18.87
2idkD-5jipA:
18.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jip CORTICAL-LYTIC
ENZYME

(Clostridium
perfringens) 		PF01183
(Glyco_hydro_25) 		5 LEU A 148
MET A 173
SER A  79
LEU A 112
HIS A  74
 None
 1.08A 2idkA-5jipA:
undetectable
2idkB-5jipA:
undetectable
2idkC-5jipA:
undetectable
2idkD-5jipA:
undetectable		 2idkA-5jipA:
18.87
2idkB-5jipA:
18.87
2idkC-5jipA:
18.87
2idkD-5jipA:
18.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t9p RIBOSOME BIOGENESIS
PROTEIN 15

(Saccharomyces
cerevisiae) 		no annotation 5 LEU B 157
MET B 158
SER B 108
LEU B 162
MET B 152
 None
 1.43A 2idkA-5t9pB:
undetectable
2idkB-5t9pB:
undetectable
2idkC-5t9pB:
undetectable
2idkD-5t9pB:
undetectable		 2idkA-5t9pB:
16.72
2idkB-5t9pB:
16.72
2idkC-5t9pB:
16.72
2idkD-5t9pB:
16.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wkn NUCLEOPROTEIN

(Mammalian
rubulavirus 5) 		no annotation 5 LEU A 273
SER A 290
LEU A 277
TYR A 329
THR A 294
 None
 1.43A 2idkA-5wknA:
undetectable
2idkB-5wknA:
undetectable
2idkC-5wknA:
undetectable
2idkD-5wknA:
undetectable		 2idkA-5wknA:
undetectable
2idkB-5wknA:
undetectable
2idkC-5wknA:
undetectable
2idkD-5wknA:
undetectable