SIMILAR PATTERNS OF AMINO ACIDS FOR 2IDK_A_C2FA1410

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1dcn DELTA 2 CRYSTALLIN

(Anas
platyrhynchos) 		PF00206
(Lyase_1)
PF14698
(ASL_C2) 		5 TYR A 265
THR A 274
LEU A 295
SER A 268
HIS A 178
 None
 1.36A 2idkA-1dcnA:
0.0
2idkB-1dcnA:
0.0
2idkC-1dcnA:
0.0
2idkD-1dcnA:
0.0		 2idkA-1dcnA:
20.18
2idkB-1dcnA:
20.18
2idkC-1dcnA:
20.18
2idkD-1dcnA:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1hcy ARTHROPODAN
HEMOCYANIN

(Panulirus
interruptus) 		PF00372
(Hemocyanin_M)
PF03722
(Hemocyanin_N)
PF03723
(Hemocyanin_C) 		5 LEU A 383
HIS A 348
SER A 342
LEU A 246
HIS A 247
 None
CU  A 666 (-3.8A)
None
None
None
 1.45A 2idkA-1hcyA:
0.0
2idkB-1hcyA:
0.0
2idkC-1hcyA:
0.0
2idkD-1hcyA:
0.0		 2idkA-1hcyA:
18.06
2idkB-1hcyA:
18.06
2idkC-1hcyA:
18.06
2idkD-1hcyA:
18.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jk0 RIBONUCLEOSIDE-DIPHO
SPHATE REDUCTASE
SMALL CHAIN 2

(Saccharomyces
cerevisiae) 		PF00268
(Ribonuc_red_sm) 		5 LEU B  28
SER B 173
TYR B 175
LEU B  27
HIS B 233
 None
 1.46A 2idkA-1jk0B:
undetectable
2idkB-1jk0B:
undetectable
2idkC-1jk0B:
undetectable
2idkD-1jk0B:
undetectable		 2idkA-1jk0B:
21.13
2idkB-1jk0B:
21.13
2idkC-1jk0B:
21.13
2idkD-1jk0B:
21.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1o66 3-METHYL-2-OXOBUTANO
ATE
HYDROXYMETHYLTRANSFE
RASE

(Neisseria
meningitidis) 		PF02548
(Pantoate_transf) 		5 LEU A 217
HIS A 214
MET A 213
SER A  26
HIS A 235
 None
 1.31A 2idkA-1o66A:
1.1
2idkB-1o66A:
1.1
2idkC-1o66A:
1.3
2idkD-1o66A:
1.3		 2idkA-1o66A:
23.01
2idkB-1o66A:
23.01
2idkC-1o66A:
23.01
2idkD-1o66A:
23.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1orr CDP-TYVELOSE-2-EPIME
RASE

(Salmonella
enterica) 		PF16363
(GDP_Man_Dehyd) 		5 LEU A  13
SER A 247
TYR A 249
LEU A  80
HIS A  79
 NAD  A1200 (-3.7A)
None
None
NAD  A1200 (-4.4A)
None
 1.50A 2idkA-1orrA:
6.7
2idkB-1orrA:
6.8
2idkC-1orrA:
6.8
2idkD-1orrA:
7.0		 2idkA-1orrA:
23.34
2idkB-1orrA:
23.34
2idkC-1orrA:
23.34
2idkD-1orrA:
23.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ua7 ALPHA-AMYLASE

(Bacillus
subtilis) 		PF00128
(Alpha-amylase) 		5 THR A  35
HIS A 342
SER A   5
LEU A 302
HIS A  13
 None
 1.36A 2idkA-1ua7A:
1.8
2idkB-1ua7A:
1.4
2idkC-1ua7A:
1.4
2idkD-1ua7A:
0.9		 2idkA-1ua7A:
20.75
2idkB-1ua7A:
20.75
2idkC-1ua7A:
20.75
2idkD-1ua7A:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eo6 B-CELL LINKER
PROTEIN

(Mus musculus) 		PF00017
(SH2) 		5 THR A  63
LEU A  49
SER A  53
LEU A  39
HIS A  40
 None
 1.50A 2idkA-2eo6A:
0.0
2idkB-2eo6A:
0.0
2idkC-2eo6A:
0.0
2idkD-2eo6A:
undetectable		 2idkA-2eo6A:
18.15
2idkB-2eo6A:
18.15
2idkC-2eo6A:
18.15
2idkD-2eo6A:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2km6 NACHT, LRR AND PYD
DOMAINS-CONTAINING
PROTEIN 7

(Homo sapiens) 		PF02758
(PYRIN) 		5 THR A  14
LEU A  85
MET A  88
LEU A  77
MET A  80
 None
 1.29A 2idkA-2km6A:
undetectable
2idkB-2km6A:
undetectable
2idkC-2km6A:
undetectable
2idkD-2km6A:
undetectable		 2idkA-2km6A:
18.25
2idkB-2km6A:
18.25
2idkC-2km6A:
18.25
2idkD-2km6A:
18.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p12 HYPOTHETICAL PROTEIN
DUF402

(Rhodococcus
jostii) 		PF04167
(DUF402) 		5 THR A 143
LEU A 105
LEU A 123
HIS A 127
MET A 124
 None
 1.37A 2idkA-2p12A:
undetectable
2idkB-2p12A:
undetectable
2idkC-2p12A:
undetectable
2idkD-2p12A:
0.2		 2idkA-2p12A:
21.85
2idkB-2p12A:
21.85
2idkC-2p12A:
21.85
2idkD-2p12A:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qza SECRETED EFFECTOR
PROTEIN

(Salmonella
enterica) 		PF13599
(Pentapeptide_4)
PF13979
(SopA_C)
PF13981
(SopA) 		5 TYR A 444
LEU A 450
HIS A 477
TYR A 445
HIS A 405
 None
 1.47A 2idkA-2qzaA:
0.0
2idkB-2qzaA:
0.0
2idkC-2qzaA:
0.0
2idkD-2qzaA:
0.0		 2idkA-2qzaA:
18.53
2idkB-2qzaA:
18.53
2idkC-2qzaA:
18.53
2idkD-2qzaA:
18.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w2j CARBONIC
ANHYDRASE-RELATED
PROTEIN

(Homo sapiens) 		PF00194
(Carb_anhydrase) 		5 THR A 241
LEU A 206
SER A 243
LEU A 140
HIS A 141
 None
None
None
None
CL  A 401 (-4.1A)
 1.49A 2idkA-2w2jA:
0.0
2idkB-2w2jA:
0.6
2idkC-2w2jA:
0.0
2idkD-2w2jA:
0.0		 2idkA-2w2jA:
20.92
2idkB-2w2jA:
20.92
2idkC-2w2jA:
20.92
2idkD-2w2jA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xhz ARABINOSE
5-PHOSPHATE
ISOMERASE

(Escherichia
coli) 		PF01380
(SIS) 		5 THR A 113
LEU A 119
SER A 109
LEU A  91
MET A  93
 None
 1.48A 2idkA-2xhzA:
undetectable
2idkB-2xhzA:
undetectable
2idkC-2xhzA:
undetectable
2idkD-2xhzA:
undetectable		 2idkA-2xhzA:
22.60
2idkB-2xhzA:
22.60
2idkC-2xhzA:
22.60
2idkD-2xhzA:
22.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zbl PUTATIVE ISOMERASE

(Salmonella
enterica) 		PF07221
(GlcNAc_2-epim) 		5 TYR A 329
THR A 324
LEU A 395
HIS A 258
TYR A 326
 None
 1.39A 2idkA-2zblA:
undetectable
2idkB-2zblA:
undetectable
2idkC-2zblA:
undetectable
2idkD-2zblA:
undetectable		 2idkA-2zblA:
20.95
2idkB-2zblA:
20.95
2idkC-2zblA:
20.95
2idkD-2zblA:
20.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kez PUTATIVE SUGAR
BINDING PROTEIN

(Bacteroides
vulgatus) 		PF07980
(SusD_RagB)
PF14322
(SusD-like_3) 		5 LEU A 106
HIS A 102
SER A  58
TYR A  61
MET A 146
 None
 1.29A 2idkA-3kezA:
undetectable
2idkB-3kezA:
undetectable
2idkC-3kezA:
undetectable
2idkD-3kezA:
undetectable		 2idkA-3kezA:
20.83
2idkB-3kezA:
20.83
2idkC-3kezA:
20.83
2idkD-3kezA:
20.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3uyq CARBONIC ANHYDRASE 3

(Homo sapiens) 		PF00194
(Carb_anhydrase) 		5 THR A 216
LEU A 183
SER A 218
LEU A 118
HIS A 119
 None
None
None
None
ZN  A 261 (-3.2A)
 1.45A 2idkA-3uyqA:
undetectable
2idkB-3uyqA:
0.5
2idkC-3uyqA:
undetectable
2idkD-3uyqA:
0.2		 2idkA-3uyqA:
21.32
2idkB-3uyqA:
21.32
2idkC-3uyqA:
21.32
2idkD-3uyqA:
21.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wbz LIKELY HISTIDYL
TRNA-SPECIFIC
GUANYLYLTRANSFERASE

(Candida
albicans) 		PF04446
(Thg1)
PF14413
(Thg1C) 		5 TYR A 108
THR A 106
LEU A 126
SER A 101
LEU A 121
 None
 1.36A 2idkA-3wbzA:
undetectable
2idkB-3wbzA:
undetectable
2idkC-3wbzA:
undetectable
2idkD-3wbzA:
undetectable		 2idkA-3wbzA:
19.94
2idkB-3wbzA:
19.94
2idkC-3wbzA:
19.94
2idkD-3wbzA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ehi BIFUNCTIONAL PURINE
BIOSYNTHESIS PROTEIN
PURH

(Campylobacter
jejuni) 		PF01808
(AICARFT_IMPCHas)
PF02142
(MGS) 		5 THR A 503
LEU A 398
MET A 402
TYR A 501
LEU A 395
 None
 1.48A 2idkA-4ehiA:
2.4
2idkB-4ehiA:
2.6
2idkC-4ehiA:
undetectable
2idkD-4ehiA:
undetectable		 2idkA-4ehiA:
20.90
2idkB-4ehiA:
20.90
2idkC-4ehiA:
20.90
2idkD-4ehiA:
20.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fvl COLLAGENASE 3

(Homo sapiens) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10) 		5 LEU A 239
HIS A 222
MET A 240
LEU A 254
HIS A 277
 None
ZN  A 501 (-3.3A)
None
None
None
 1.39A 2idkA-4fvlA:
undetectable
2idkB-4fvlA:
undetectable
2idkC-4fvlA:
undetectable
2idkD-4fvlA:
undetectable		 2idkA-4fvlA:
20.26
2idkB-4fvlA:
20.26
2idkC-4fvlA:
20.26
2idkD-4fvlA:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fvl COLLAGENASE 3

(Homo sapiens) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10) 		5 LEU A 239
MET A 240
SER A 227
LEU A 254
HIS A 277
 None
 1.13A 2idkA-4fvlA:
undetectable
2idkB-4fvlA:
undetectable
2idkC-4fvlA:
undetectable
2idkD-4fvlA:
undetectable		 2idkA-4fvlA:
20.26
2idkB-4fvlA:
20.26
2idkC-4fvlA:
20.26
2idkD-4fvlA:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fvl COLLAGENASE 3

(Homo sapiens) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10) 		5 LEU A 254
HIS A 277
LEU A 239
HIS A 222
MET A 240
 None
None
None
ZN  A 501 (-3.3A)
None
 1.38A 2idkA-4fvlA:
undetectable
2idkB-4fvlA:
undetectable
2idkC-4fvlA:
undetectable
2idkD-4fvlA:
undetectable		 2idkA-4fvlA:
20.26
2idkB-4fvlA:
20.26
2idkC-4fvlA:
20.26
2idkD-4fvlA:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i5s PUTATIVE HISTIDINE
KINASE COVS
VICK-LIKE PROTEIN

(Streptococcus
mutans) 		PF00512
(HisKA)
PF00989
(PAS)
PF02518
(HATPase_c) 		5 THR A 285
MET A 353
SER A 318
LEU A 431
HIS A 411
 None
 1.28A 2idkA-4i5sA:
undetectable
2idkB-4i5sA:
undetectable
2idkC-4i5sA:
undetectable
2idkD-4i5sA:
1.4		 2idkA-4i5sA:
20.13
2idkB-4i5sA:
20.13
2idkC-4i5sA:
20.13
2idkD-4i5sA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i9o CREB-BINDING PROTEIN

(Mus musculus) 		PF02172
(KIX) 		5 TYR A 650
HIS A 592
TYR A 649
LEU A 599
HIS A 602
 None
 1.35A 2idkA-4i9oA:
undetectable
2idkB-4i9oA:
undetectable
2idkC-4i9oA:
undetectable
2idkD-4i9oA:
undetectable		 2idkA-4i9oA:
16.48
2idkB-4i9oA:
16.48
2idkC-4i9oA:
16.48
2idkD-4i9oA:
16.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tyh MITOGEN-ACTIVATED
PROTEIN KINASE 14

(Mus musculus) 		PF00069
(Pkinase) 		5 LEU B 232
HIS B 228
SER B 254
TYR B 258
LEU B 236
 None
 1.49A 2idkA-4tyhB:
undetectable
2idkB-4tyhB:
undetectable
2idkC-4tyhB:
undetectable
2idkD-4tyhB:
undetectable		 2idkA-4tyhB:
22.19
2idkB-4tyhB:
22.19
2idkC-4tyhB:
22.19
2idkD-4tyhB:
22.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xjn NUCLEOCAPSID

(Mammalian
rubulavirus 5) 		PF00973
(Paramyxo_ncap) 		5 TYR A 329
THR A 294
LEU A 277
SER A 290
LEU A 273
 None
 1.38A 2idkA-4xjnA:
undetectable
2idkB-4xjnA:
undetectable
2idkC-4xjnA:
undetectable
2idkD-4xjnA:
undetectable		 2idkA-4xjnA:
20.49
2idkB-4xjnA:
20.49
2idkC-4xjnA:
20.49
2idkD-4xjnA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jip CORTICAL-LYTIC
ENZYME

(Clostridium
perfringens) 		PF01183
(Glyco_hydro_25) 		5 LEU A 112
HIS A  74
SER A  79
LEU A 148
MET A 173
 None
 1.16A 2idkA-5jipA:
undetectable
2idkB-5jipA:
undetectable
2idkC-5jipA:
undetectable
2idkD-5jipA:
undetectable		 2idkA-5jipA:
18.87
2idkB-5jipA:
18.87
2idkC-5jipA:
18.87
2idkD-5jipA:
18.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mkk MULTIDRUG RESISTANCE
ABC TRANSPORTER
ATP-BINDING AND
PERMEASE PROTEIN
MULTIDRUG RESISTANCE
ABC TRANSPORTER
ATP-BINDING AND
PERMEASE PROTEIN

(Thermus
thermophilus;
Thermus
thermophilus) 		PF00005
(ABC_tran)
PF00664
(ABC_membrane)
PF00005
(ABC_tran)
PF00664
(ABC_membrane) 		5 LEU A 220
ARG B 121
TYR B 110
LEU B 102
HIS B 101
 None
 1.47A 2idkA-5mkkA:
1.8
2idkB-5mkkA:
1.7
2idkC-5mkkA:
undetectable
2idkD-5mkkA:
undetectable		 2idkA-5mkkA:
19.54
2idkB-5mkkA:
19.54
2idkC-5mkkA:
19.54
2idkD-5mkkA:
19.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5txr 5-AMINOLEVULINATE
SYNTHASE,
MITOCHONDRIAL

(Saccharomyces
cerevisiae) 		no annotation 5 THR B 334
LEU B 167
HIS B 171
SER B 338
LEU B 163
 PLP  B 605 (-3.6A)
None
None
None
None
 1.40A 2idkA-5txrB:
2.3
2idkB-5txrB:
2.3
2idkC-5txrB:
2.2
2idkD-5txrB:
undetectable		 2idkA-5txrB:
undetectable
2idkB-5txrB:
undetectable
2idkC-5txrB:
undetectable
2idkD-5txrB:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vkq NO MECHANORECEPTOR
POTENTIAL C ISOFORM
L

(Drosophila
melanogaster) 		PF00023
(Ank)
PF00520
(Ion_trans)
PF12796
(Ank_2)
PF13637
(Ank_4) 		5 LEU A 539
HIS A 540
TYR A 570
LEU A 554
HIS A 553
 None
 1.44A 2idkA-5vkqA:
undetectable
2idkB-5vkqA:
undetectable
2idkC-5vkqA:
undetectable
2idkD-5vkqA:
undetectable		 2idkA-5vkqA:
10.40
2idkB-5vkqA:
10.40
2idkC-5vkqA:
10.40
2idkD-5vkqA:
10.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wkn NUCLEOPROTEIN

(Mammalian
rubulavirus 5) 		no annotation 5 TYR A 329
THR A 294
LEU A 277
SER A 290
LEU A 273
 None
 1.42A 2idkA-5wknA:
undetectable
2idkB-5wknA:
undetectable
2idkC-5wknA:
undetectable
2idkD-5wknA:
undetectable		 2idkA-5wknA:
undetectable
2idkB-5wknA:
undetectable
2idkC-5wknA:
undetectable
2idkD-5wknA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xya -

(-) 		no annotation 5 LEU A 905
SER A 835
TYR A 831
LEU A 883
HIS A 881
 None
 1.43A 2idkA-5xyaA:
undetectable
2idkB-5xyaA:
2.6
2idkC-5xyaA:
1.5
2idkD-5xyaA:
1.7		 2idkA-5xyaA:
undetectable
2idkB-5xyaA:
undetectable
2idkC-5xyaA:
undetectable
2idkD-5xyaA:
undetectable