SIMILAR PATTERNS OF AMINO ACIDS FOR 2H9T_H_SVRH301_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cw0 PROTEIN (DNA
MISMATCH
ENDONUCLEASE)

(Escherichia
coli) 		PF03852
(Vsr) 		5 PRO A  47
ARG A  99
VAL A 111
GLY A 140
GLU A 136
 None
 1.47A 2h9tH-1cw0A:
undetectable		 2h9tH-1cw0A:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cx1 ENDOGLUCANASE C

(Cellulomonas
fimi) 		PF02018
(CBM_4_9) 		5 PRO A  21
TRP A  22
VAL A 146
GLN A 145
GLU A 105
 None
 1.44A 2h9tH-1cx1A:
undetectable		 2h9tH-1cx1A:
20.51
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1id5 THROMBIN

(Bos taurus) 		PF00089
(Trypsin) 		5 HIS H  91
ARG H  93
ARG H 101
TRP H 237
VAL H 241
 None
 1.12A 2h9tH-1id5H:
41.6		 2h9tH-1id5H:
87.89
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1mkx PRETHROMBIN-2

(Bos taurus) 		PF00089
(Trypsin)
PF09396
(Thrombin_light) 		6 HIS K  91
PRO K  92
ARG K  93
ARG K 101
TRP K 237
VAL K 241
 None
 0.47A 2h9tH-1mkxK:
35.2		 2h9tH-1mkxK:
87.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mnn NDT80 PROTEIN

(Saccharomyces
cerevisiae) 		PF05224
(NDT80_PhoG) 		5 ARG A  85
VAL A 150
GLN A 151
GLY A 308
GLU A 299
 None
 1.25A 2h9tH-1mnnA:
undetectable		 2h9tH-1mnnA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1rp1 PANCREATIC LIPASE
RELATED PROTEIN 1

(Canis lupus) 		PF00151
(Lipase)
PF01477
(PLAT) 		5 HIS A  75
TRP A 106
VAL A 124
GLY A   9
GLU A   2
 None
 1.14A 2h9tH-1rp1A:
undetectable		 2h9tH-1rp1A:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ukm EMS16 A CHAIN
EMS16 B CHAIN

(Echis
multisquamatus) 		PF00059
(Lectin_C) 		5 PRO B  70
LYS A 102
GLN A 105
GLY A  71
GLU A  29
 None
GOL  B1303 (-3.0A)
None
None
None
 1.03A 2h9tH-1ukmB:
undetectable		 2h9tH-1ukmB:
17.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gt1 LIPOPOLYSACCHARIDE
HEPTOSYLTRANSFERASE-
1

(Escherichia
coli) 		PF01075
(Glyco_transf_9) 		5 HIS A 198
PRO A 195
TRP A 194
VAL A 278
GLY A 288
 None
 1.00A 2h9tH-2gt1A:
undetectable		 2h9tH-2gt1A:
21.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gt1 LIPOPOLYSACCHARIDE
HEPTOSYLTRANSFERASE-
1

(Escherichia
coli) 		PF01075
(Glyco_transf_9) 		5 HIS A 198
PRO A 195
TRP A 194
VAL A 278
GLY A 289
 None
 0.83A 2h9tH-2gt1A:
undetectable		 2h9tH-2gt1A:
21.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wnp FICOLIN-1

(Homo sapiens) 		PF00147
(Fibrinogen_C) 		5 PRO F  86
ARG F  87
VAL F 115
GLY F 155
GLU F 156
 None
 1.43A 2h9tH-2wnpF:
undetectable		 2h9tH-2wnpF:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x24 ACETYL-COA
CARBOXYLASE

(Bos taurus) 		PF01039
(Carboxyl_trans) 		5 LYS A 185
TRP A 174
VAL A 172
GLN A 171
GLU A 165
 None
 1.32A 2h9tH-2x24A:
undetectable		 2h9tH-2x24A:
14.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zgh GRANZYME M

(Homo sapiens) 		PF00089
(Trypsin) 		5 HIS A  74
PRO A  75
TRP A 223
LYS A 226
VAL A 227
 None
 0.61A 2h9tH-2zghA:
32.2		 2h9tH-2zghA:
28.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bjd PUTATIVE
3-OXOACYL-(ACYL-CARR
IER-PROTEIN)
SYNTHASE

(Pseudomonas
aeruginosa) 		PF14515
(HOASN)
PF14518
(Haem_oxygenas_2) 		5 ARG A 153
ARG A 156
GLN A  61
GLY A  49
GLU A  47
 None
 1.47A 2h9tH-3bjdA:
undetectable		 2h9tH-3bjdA:
21.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cdx SUCCINYLGLUTAMATEDES
UCCINYLASE/ASPARTOAC
YLASE

(Rhodobacter
sphaeroides) 		PF04952
(AstE_AspA) 		5 ARG A 328
ARG A 273
VAL A 269
GLY A 315
GLU A 286
 None
 1.48A 2h9tH-3cdxA:
undetectable		 2h9tH-3cdxA:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3eo7 PUTATIVE
NITROREDUCTASE

(Trichormus
variabilis) 		PF00881
(Nitroreductase) 		5 HIS A 190
PRO A 100
VAL A 477
GLY A 341
GLU A 343
 FMN  A 700 (-4.1A)
FMN  A 700 (-4.1A)
None
None
None
 1.40A 2h9tH-3eo7A:
undetectable		 2h9tH-3eo7A:
20.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hs0 COBRA VENOM FACTOR

(Naja kaouthia) 		PF00207
(A2M)
PF01835
(A2M_N)
PF07703
(A2M_N_2) 		5 TRP B 883
LYS B 790
VAL B 791
GLY A 232
GLU A 234
 None
 1.34A 2h9tH-3hs0B:
undetectable		 2h9tH-3hs0B:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3i0w 8-OXOGUANINE-DNA-GLY
COSYLASE

(Clostridium
acetobutylicum) 		PF00730
(HhH-GPD)
PF07934
(OGG_N) 		5 ARG A  34
VAL A  54
GLN A  55
GLY A  58
GLU A  59
 None
 1.39A 2h9tH-3i0wA:
undetectable		 2h9tH-3i0wA:
20.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3nxp PRETHROMBIN-1

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		6 HIS A 491
ARG A 493
TRP A 637
LYS A 640
VAL A 641
GLN A 644
 None
None
GOL  A 704 (-4.4A)
None
GOL  A 704 ( 4.4A)
GOL  A 704 (-3.0A)
 0.98A 2h9tH-3nxpA:
29.6		 2h9tH-3nxpA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3r3g THROMBIN HEAVY CHAIN

(Homo sapiens) 		PF00089
(Trypsin) 		5 HIS B  91
ARG B 101
TRP B 237
LYS B 240
VAL B 241
 None
 0.90A 2h9tH-3r3gB:
42.9		 2h9tH-3r3gB:
97.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3r3g THROMBIN HEAVY CHAIN

(Homo sapiens) 		PF00089
(Trypsin) 		6 HIS B  91
PRO B  92
ARG B  93
ARG B 101
TRP B 237
VAL B 241
 None
 0.86A 2h9tH-3r3gB:
42.9		 2h9tH-3r3gB:
97.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3r3g THROMBIN HEAVY CHAIN

(Homo sapiens) 		PF00089
(Trypsin) 		5 HIS B  91
PRO B  92
TRP B 237
VAL B 241
GLN B 244
 None
 0.83A 2h9tH-3r3gB:
42.9		 2h9tH-3r3gB:
97.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3to3 PETROBACTIN
BIOSYNTHESIS PROTEIN
ASBB

(Bacillus
anthracis) 		PF04183
(IucA_IucC)
PF06276
(FhuF) 		5 PRO A 475
TRP A 324
VAL A 328
GLN A 331
GLU A 338
 None
 1.15A 2h9tH-3to3A:
undetectable		 2h9tH-3to3A:
17.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4a7k ALDOS-2-ULOSE
DEHYDRATASE

(Phanerochaete
chrysosporium) 		no annotation 5 PRO A  72
TRP A  83
VAL A  27
GLN A  28
GLY A  34
 None
 1.50A 2h9tH-4a7kA:
undetectable		 2h9tH-4a7kA:
14.27
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4d9r COMPLEMENT FACTOR D

(Homo sapiens) 		PF00089
(Trypsin) 		5 HIS A  91
PRO A  92
TRP A 237
VAL A 241
GLU A  49
 None
 1.33A 2h9tH-4d9rA:
18.4		 2h9tH-4d9rA:
30.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4e8d GLYCOSYL HYDROLASE,
FAMILY 35

(Streptococcus
pneumoniae) 		PF01301
(Glyco_hydro_35) 		5 ARG A 402
ARG A 400
LYS A 420
VAL A 419
GLY A 504
 None
 1.46A 2h9tH-4e8dA:
undetectable		 2h9tH-4e8dA:
18.24
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4hzh PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		5 HIS A 407
ARG A 409
TRP A 569
VAL A 573
GLU A 579
 None
 1.35A 2h9tH-4hzhA:
29.1		 2h9tH-4hzhA:
99.61
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4hzh PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		6 HIS A 407
PRO A 408
TRP A 569
LYS A 572
VAL A 573
GLU A 579
 None
 1.09A 2h9tH-4hzhA:
29.1		 2h9tH-4hzhA:
99.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w82 FATTY ACID SYNTHASE

(Homo sapiens) 		PF00107
(ADH_zinc_N) 		5 PRO A1825
ARG A1824
TRP A1640
VAL A1636
GLY A1610
 None
 1.50A 2h9tH-4w82A:
undetectable		 2h9tH-4w82A:
23.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5lpe KALLIKREIN-10

(Homo sapiens) 		PF00089
(Trypsin) 		5 HIS A  91
PRO A  92
TRP A 237
LYS A 240
VAL A 241
 None
 0.61A 2h9tH-5lpeA:
5.3		 2h9tH-5lpeA:
31.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nfg PROCARDOSIN-B,PROCAR
DOSIN-B

(Cynara
cardunculus) 		no annotation 5 PRO A  89
ARG A 104
VAL A  77
GLY A 214
GLU A 215
 None
 1.40A 2h9tH-5nfgA:
undetectable		 2h9tH-5nfgA:
18.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5to3 PROTHROMBIN,THROMBOM
ODULIN

(Homo sapiens) 		PF00089
(Trypsin)
PF09064
(Tme5_EGF_like) 		6 HIS B 102
ARG B 104
ARG B 113
TRP B 264
VAL B 268
GLY B 274
 None
 0.83A 2h9tH-5to3B:
44.6		 2h9tH-5to3B:
88.62
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5to3 PROTHROMBIN,THROMBOM
ODULIN

(Homo sapiens) 		PF00089
(Trypsin)
PF09064
(Tme5_EGF_like) 		7 HIS B 102
PRO B 103
ARG B 104
ARG B 113
TRP B 264
VAL B 268
GLY B 275
 None
 1.19A 2h9tH-5to3B:
44.6		 2h9tH-5to3B:
88.62
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5to3 PROTHROMBIN,THROMBOM
ODULIN

(Homo sapiens) 		PF00089
(Trypsin)
PF09064
(Tme5_EGF_like) 		6 HIS B 102
PRO B 103
ARG B 104
TRP B 264
LYS B 267
VAL B 268
 None
 0.99A 2h9tH-5to3B:
44.6		 2h9tH-5to3B:
88.62
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5to3 PROTHROMBIN,THROMBOM
ODULIN

(Homo sapiens) 		PF00089
(Trypsin)
PF09064
(Tme5_EGF_like) 		5 HIS B 102
TRP B 264
VAL B 268
GLN B 271
GLY B 274
 None
 1.22A 2h9tH-5to3B:
44.6		 2h9tH-5to3B:
88.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zgb LHCR1

(Cyanidioschyzon
merolae) 		no annotation 5 PRO 1  13
ARG 1  29
VAL 1  36
GLN 1  40
GLU 1 113
 None
None
None
CLA  1 602 (-4.0A)
None
 1.30A 2h9tH-5zgb1:
undetectable		 2h9tH-5zgb1:
14.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6eh1 STRUCTURAL PROTEIN
VP2
STRUCTURAL PROTEIN
VP3

(Sacbrood virus) 		no annotation 5 PRO B 153
ARG B 172
GLN B 147
GLY C  97
GLU C  96
 None
 1.47A 2h9tH-6eh1B:
undetectable		 2h9tH-6eh1B:
undetectable