SIMILAR PATTERNS OF AMINO ACIDS FOR 2F89_F_210F9001_1
List of similar pattern of amino acids derived from ASSAM searchHit | Macromolecule/ Organism |
Pfam | Res. | Interface | HETATM | RMSD | Dali Z-score | Seq. Identity (%) | View | Dock | |
---|---|---|---|---|---|---|---|---|---|---|---|
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 1rqj | GERANYLTRANSTRANSFERASE (Escherichiacoli) |
PF00348(polyprenyl_synt) | 8 | ASP A 105ASP A 111ARG A 116LYS A 202THR A 203GLN A 241ASP A 244LYS A 258 | MG A 907 (-2.5A) MG A 909 (-2.4A)RIS A 901 (-2.7A)RIS A 901 (-2.5A)IPE A 900 ( 3.3A)RIS A 901 ( 3.6A) MG A 908 ( 2.7A)RIS A 901 (-2.7A) | 0.31A | 2f89F-1rqjA:31.4 | 2f89F-1rqjA:27.35 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 1wmw | GERANYLGERANYLDIPHOSPHATESYNTHETASE (Thermusthermophilus) |
PF00348(polyprenyl_synt) | 5 | ASP A 79ASP A 83ARG A 88TYR A 176GLN A 209 | None | 0.96A | 2f89F-1wmwA:33.0 | 2f89F-1wmwA:29.23 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 2azk | GERANYLGERANYLPYROPHOSPHATESYNTHETASE (Sulfolobussolfataricus) |
PF00348(polyprenyl_synt) | 5 | ASP A 81ARG A 90THR A 161GLN A 197ASP A 200 | None | 1.14A | 2f89F-2azkA:24.2 | 2f89F-2azkA:25.95 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 2dh4 | YPL069C (Saccharomycescerevisiae) |
PF00348(polyprenyl_synt) | 7 | ASP A 80ASP A 84ARG A 89LYS A 174THR A 175GLN A 211ASP A 214 | MG A 341 (-2.6A) MG A 341 (-3.0A) MG A 341 ( 4.6A)NoneNoneNoneNone | 0.44A | 2f89F-2dh4A:26.9 | 2f89F-2dh4A:24.60 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 2o1o | PUTATIVE FARNESYLPYROPHOSPHATESYNTHASE (Cryptosporidiumparvum) |
PF00348(polyprenyl_synt) | 7 | ASP A 115ASP A 119ARG A 124LYS A 210THR A 211TYR A 214GLN A 251 | MG A 503 (-2.5A) MG A 502 (-2.4A)RIS A 400 (-2.9A)RIS A 400 (-2.8A)RIS A 400 (-3.7A)NoneRIS A 400 (-3.1A) | 0.44A | 2f89F-2o1oA:36.7 | 2f89F-2o1oA:29.24 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 2q80 | GERANYLGERANYLPYROPHOSPHATESYNTHETASE (Homo sapiens) |
PF00348(polyprenyl_synt) | 6 | ASP A 64ASP A 68ARG A 73LYS A 151GLN A 185ASP A 188 | GRG A 500 (-2.4A) MG A 400 (-2.6A)GRG A 500 (-2.9A)GRG A 500 (-2.8A)GRG A 500 (-3.2A)GRG A 500 (-3.5A) | 0.69A | 2f89F-2q80A:26.2 | 2f89F-2q80A:26.90 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 2q80 | GERANYLGERANYLPYROPHOSPHATESYNTHETASE (Homo sapiens) |
PF00348(polyprenyl_synt) | 5 | ASP A 64ASP A 68ARG A 73LYS A 151THR A 152 | GRG A 500 (-2.4A) MG A 400 (-2.6A)GRG A 500 (-2.9A)GRG A 500 (-2.8A)GRG A 500 ( 4.6A) | 0.80A | 2f89F-2q80A:26.2 | 2f89F-2q80A:26.90 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3aq0 | GERANYL DIPHOSPHATESYNTHASE (Arabidopsisthaliana) |
PF00348(polyprenyl_synt) | 5 | ASP A 107ASP A 111ARG A 116LYS A 193THR A 194 | MG A1000 (-2.9A) MG A1001 (-2.8A)FPP A1002 (-2.9A)FPP A1002 (-2.5A)ISY A1003 (-4.7A) | 0.70A | 2f89F-3aq0A:26.4 | 2f89F-3aq0A:25.07 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3aqc | COMPONENT B OFHEXAPRENYLDIPHOSPHATE SYNTHASE (Micrococcusluteus) |
PF00348(polyprenyl_synt) | 7 | ASP B 84ASP B 88ARG B 93LYS B 170THR B 171GLN B 208ASP B 211 | MG B 326 (-2.6A) MG B 327 (-2.4A)2DE B 329 (-3.8A)2DE B 329 (-2.5A)NoneNone MG B 328 (-3.1A) | 0.96A | 2f89F-3aqcB:28.7 | 2f89F-3aqcB:24.68 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3mzv | DECAPRENYLDIPHOSPHATE SYNTHASE (Rhodobactercapsulatus) |
PF00348(polyprenyl_synt) | 5 | ASP A 93ARG A 102LYS A 179THR A 180GLN A 217 | None | 0.74A | 2f89F-3mzvA:26.8 | 2f89F-3mzvA:26.03 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3p41 | GERANYLTRANSTRANSFERASE (Pseudomonasprotegens) |
PF00348(polyprenyl_synt) | 5 | ASP A 83ASP A 89ARG A 94LYS A 180THR A 181 | MG A 297 (-2.5A) MG A 297 (-2.5A)DMA A 300 (-2.9A)POP A 301 ( 2.4A)None | 0.45A | 2f89F-3p41A:24.5 | 2f89F-3p41A:27.84 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3q1o | GERANYLTRANSTRANSFERASE (ISPA) (Helicobacterpylori) |
PF00348(polyprenyl_synt) | 8 | ASP A 92ASP A 98ARG A 103LYS A 186THR A 187GLN A 225ASP A 228LYS A 242 | MG A 400 ( 2.8A) MG A 400 ( 3.2A)DMA A 501 (-3.0A)DMA A 501 (-3.1A)DMA A 500 (-3.4A)DMA A 501 ( 3.8A)DMA A 501 ( 3.5A)DMA A 501 (-2.7A) | 0.40A | 2f89F-3q1oA:31.6 | 2f89F-3q1oA:26.16 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3q1o | GERANYLTRANSTRANSFERASE (ISPA) (Helicobacterpylori) |
PF00348(polyprenyl_synt) | 5 | ASP A 98ARG A 103GLN A 225ASP A 228LYS A 242 | MG A 400 ( 3.2A)DMA A 501 (-3.0A)DMA A 501 ( 3.8A)DMA A 501 ( 3.5A)DMA A 501 (-2.7A) | 1.18A | 2f89F-3q1oA:31.6 | 2f89F-3q1oA:26.16 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3qqv | GERANYLGERANYLPYROPHOSPHATESYNTHASE (Corynebacteriumglutamicum) |
PF00348(polyprenyl_synt) | 6 | ASP A 108ASP A 112ARG A 117LYS A 215THR A 216GLN A 254 | MG A 381 (-2.4A) MG A 381 (-2.8A)DMA A 384 (-3.0A)DMA A 384 (-3.0A)DMA A 383 ( 4.0A)DMA A 383 (-3.2A) | 0.51A | 2f89F-3qqvA:34.4 | 2f89F-3qqvA:29.06 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3qqv | GERANYLGERANYLPYROPHOSPHATESYNTHASE (Corynebacteriumglutamicum) |
PF00348(polyprenyl_synt) | 5 | ASP A 108ASP A 112ARG A 117LYS A 215TYR A 219 | MG A 381 (-2.4A) MG A 381 (-2.8A)DMA A 384 (-3.0A)DMA A 384 (-3.0A)DMA A 384 ( 4.9A) | 0.78A | 2f89F-3qqvA:34.4 | 2f89F-3qqvA:29.06 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3wjo | OCTAPRENYLDIPHOSPHATE SYNTHASE (Escherichiacoli) |
PF00348(polyprenyl_synt) | 5 | ASP A 84ARG A 93LYS A 170GLN A 208ASP A 211 | IPE A 401 (-2.6A)IPE A 401 ( 4.2A)IPE A 401 ( 2.9A)IPE A 402 (-3.6A)IPE A 402 ( 4.6A) | 1.02A | 2f89F-3wjoA:25.9 | 2f89F-3wjoA:25.53 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3wjo | OCTAPRENYLDIPHOSPHATE SYNTHASE (Escherichiacoli) |
PF00348(polyprenyl_synt) | 5 | ASP A 84ARG A 93THR A 171GLN A 208ASP A 211 | IPE A 401 (-2.6A)IPE A 401 ( 4.2A)IPE A 402 ( 3.8A)IPE A 402 (-3.6A)IPE A 402 ( 4.6A) | 0.67A | 2f89F-3wjoA:25.9 | 2f89F-3wjoA:25.53 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 3zou | FARNESYLPYROPHOSPHATESYNTHASE (Pseudomonasaeruginosa) |
PF00348(polyprenyl_synt) | 5 | ASP A 83ASP A 89ARG A 94LYS A 180THR A 181 | MG A1295 (-2.5A) MG A1295 (-2.4A)GPP A1297 (-3.0A)GPP A1297 (-3.0A)None | 0.48A | 2f89F-3zouA:24.3 | 2f89F-3zouA:28.41 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4e1e | FARNESYLPYROPHOSPHATESYNTHASE (Trypanosomacruzi) |
PF00348(polyprenyl_synt) | 9 | ASP A 98ASP A 102ARG A 107LYS A 207THR A 208TYR A 211GLN A 247ASP A 250LYS A 264 | MG A 403 (-2.5A) MG A 403 (-2.4A)0MW A 404 (-2.7A)0MW A 404 (-2.8A)IPE A 405 ( 4.6A)None0MW A 404 ( 3.8A) MG A 401 (-2.7A)0MW A 404 ( 3.0A) | 0.23A | 2f89F-4e1eA:45.5 | 2f89F-4e1eA:37.67 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4fp4 | POLYPRENYLSYNTHETASE (Pyrobaculumcalidifontis) |
PF00348(polyprenyl_synt) | 6 | ASP A 86ASP A 90ARG A 95LYS A 162THR A 163GLN A 199 | UNX A 302 ( 2.6A)UNX A 302 ( 3.2A)UNX A 302 ( 4.6A)GER A 301 ( 4.8A)NoneNone | 1.14A | 2f89F-4fp4A:18.0 | 2f89F-4fp4A:24.73 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4gp1 | POLYPRENYLSYNTHETASE (Pyrobaculumcalidifontis) |
PF00348(polyprenyl_synt) | 5 | ASP A 85ASP A 89ARG A 94LYS A 184THR A 185 | None | 1.01A | 2f89F-4gp1A:28.7 | 2f89F-4gp1A:26.80 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4jzx | FARNESYLPYROPHOSPHATESYNTHASE (Leishmaniamajor) |
PF00348(polyprenyl_synt) | 5 | ASP A 98ARG A 107GLN A 247ASP A 250LYS A 264 | CA A 403 (-2.5A)476 A 402 (-2.9A)IPE A 401 (-3.7A) CA A 404 (-3.0A)476 A 402 (-2.9A) | 1.07A | 2f89F-4jzxA:46.2 | 2f89F-4jzxA:38.10 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4jzx | FARNESYLPYROPHOSPHATESYNTHASE (Leishmaniamajor) |
PF00348(polyprenyl_synt) | 9 | ASP A 98ASP A 102ARG A 107LYS A 207THR A 208TYR A 211GLN A 247ASP A 250LYS A 264 | CA A 403 (-2.5A) CA A 403 (-2.5A)476 A 402 (-2.9A)476 A 402 (-2.7A)IPE A 401 ( 3.4A)NoneIPE A 401 (-3.7A) CA A 404 (-3.0A)476 A 402 (-2.9A) | 0.29A | 2f89F-4jzxA:46.2 | 2f89F-4jzxA:38.10 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4kk2 | MONOTERPENE SYNTHASEFDS-5, CHLOROPLASTIC- FARNESYLDIPHOSPHATE SYNTHASE1 CHIMERA (Artemisiaspiciformis) |
PF00348(polyprenyl_synt) | 5 | ASP A 97ARG A 106LYS A 194THR A 195TYR A 198 | None | 1.05A | 2f89F-4kk2A:41.3 | 2f89F-4kk2A:44.35 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4lfe | GERANYLGERANYLDIPHOSPHATE SYNTHASE (Streptococcusuberis) |
PF00348(polyprenyl_synt) | 5 | ARG A 89LYS A 172THR A 173GLN A 210ASP A 213 | IPE A 301 (-2.8A)IPE A 301 (-3.0A)NoneNoneNone | 0.90A | 2f89F-4lfeA:26.2 | 2f89F-4lfeA:26.42 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4lfe | GERANYLGERANYLDIPHOSPHATE SYNTHASE (Streptococcusuberis) |
PF00348(polyprenyl_synt) | 6 | ASP A 78ASP A 84ARG A 89LYS A 172THR A 173GLN A 210 | MG A 302 (-2.5A) MG A 302 (-2.4A)IPE A 301 (-2.8A)IPE A 301 (-3.0A)NoneNone | 0.70A | 2f89F-4lfeA:26.2 | 2f89F-4lfeA:26.42 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4lls | GERANYLTRANSTRANSFERASE (Roseobacterdenitrificans) |
PF00348(polyprenyl_synt) | 8 | ASP A 80ASP A 86ARG A 91LYS A 178THR A 179GLN A 213ASP A 216LYS A 230 | CA A 304 ( 2.9A) CA A 305 (-2.3A)GST A 302 (-2.9A)GST A 302 (-3.4A)IPE A 301 (-4.2A)IPE A 301 ( 4.1A) CA A 303 (-2.9A)GST A 302 (-2.7A) | 0.65A | 2f89F-4llsA:30.3 | 2f89F-4llsA:25.20 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4p0v | FARNESYLPYROPHOSPHATESYNTHASE (Homo sapiens) |
PF00348(polyprenyl_synt) | 9 | ASP A 103ASP A 107ARG A 112LYS A 200THR A 201TYR A 204GLN A 240ASP A 243LYS A 257 | MG A 405 (-2.5A) MG A 405 (-2.4A)ZOL A 401 ( 2.7A)ZOL A 401 (-2.7A)ZOL A 401 (-3.7A)NoneZOL A 401 (-3.5A) MG A 404 (-2.8A)1WO A 402 ( 2.8A) | 0.27A | 2f89F-4p0vA:56.6 | 2f89F-4p0vA:100.00 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4rxe | FARNESYLPYROPHOSPHATESYNTHASE (Trypanosomabrucei) |
PF00348(polyprenyl_synt) | 8 | ASP A 103ASP A 107ARG A 112LYS A 212THR A 213TYR A 216GLN A 252ASP A 255 | MG A3004 (-2.5A) MG A3004 (-2.3A)3YQ A3001 (-2.8A)3YQ A3001 (-2.9A)3YQ A3001 (-4.2A)3YQ A3001 (-4.7A)3YQ A3001 ( 4.2A) MG A3003 ( 2.9A) | 0.27A | 2f89F-4rxeA:44.4 | 2f89F-4rxeA:36.02 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 4rxe | FARNESYLPYROPHOSPHATESYNTHASE (Trypanosomabrucei) |
PF00348(polyprenyl_synt) | 7 | ASP A 103ASP A 107LYS A 212THR A 213GLN A 252ASP A 255LYS A 269 | MG A3004 (-2.5A) MG A3004 (-2.3A)3YQ A3001 (-2.9A)3YQ A3001 (-4.2A)3YQ A3001 ( 4.2A) MG A3003 ( 2.9A)3YQ A3001 (-3.1A) | 0.79A | 2f89F-4rxeA:44.4 | 2f89F-4rxeA:36.02 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 4wk5 | GERANYLTRANSTRANSFERASE (Thermotoganeapolitana) |
PF00348(polyprenyl_synt) | 5 | ASP A 80ARG A 85THR A 164GLN A 198ASP A 201 | None | 0.76A | 2f89F-4wk5A:24.7 | 2f89F-4wk5A:25.91 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 5ahu | FARNESYLPYROPHOSPHATESYNTHASE (Trypanosomabrucei) |
PF00348(polyprenyl_synt) | 9 | ASP B 103ASP B 107ARG B 112LYS B 212THR B 213TYR B 216GLN B 252ASP B 255LYS B 269 | MG B1370 (-2.5A) MG B1369 (-2.2A)G76 B1368 (-2.8A)G76 B1368 (-2.8A)G76 B1368 (-4.2A)NoneG76 B1368 ( 4.0A) MG B1371 ( 3.0A)G76 B1368 (-3.1A) | 0.31A | 2f89F-5ahuB:16.6 | 2f89F-5ahuB:33.79 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 5ahu | FARNESYLPYROPHOSPHATESYNTHASE (Trypanosomabrucei) |
PF00348(polyprenyl_synt) | 5 | ASP B 107ARG B 112GLN B 252ASP B 255LYS B 269 | MG B1369 (-2.2A)G76 B1368 (-2.8A)G76 B1368 ( 4.0A) MG B1371 ( 3.0A)G76 B1368 (-3.1A) | 1.18A | 2f89F-5ahuB:16.6 | 2f89F-5ahuB:33.79 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 5h9d | FARNESYLPYROPHOSPHATESYNTHETASE (Staphylococcusaureus) |
PF00348(polyprenyl_synt) | 5 | ASP A 82ARG A 91LYS A 168THR A 169GLN A 206 | NonePO4 A 501 ( 4.9A)NoneNoneNone | 0.99A | 2f89F-5h9dA:29.3 | 2f89F-5h9dA:23.96 | ||
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target. | 5hn7 | FARNESYLPYROPHOSPHATESYNTHASE, PUTATIVE (Plasmodiumvivax) |
PF00348(polyprenyl_synt) | 9 | ASP A 126ASP A 130ARG A 135LYS A 243THR A 244TYR A 247GLN A 284ASP A 287LYS A 301 | 04M A 401 ( 4.0A)None04M A 401 (-3.5A)04M A 401 (-4.5A)04M A 401 ( 3.8A)04M A 401 (-4.5A)NoneNone04M A 401 ( 3.9A) | 0.50A | 2f89F-5hn7A:44.2 | 2f89F-5hn7A:34.03 | ||
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site. | 6b07 | FARNESYL DIPHOSPHATESYNTHASE (Choristoneurafumiferana) |
no annotation | 9 | ASP A 147ASP A 151ARG A 156LYS A 244THR A 245TYR A 248GLN A 284ASP A 287LYS A 301 | MG A 402 (-2.6A) MG A 402 (-2.5A)C6M A 401 (-2.7A)C6M A 401 (-2.6A)C6M A 401 (-3.6A)NoneC6M A 401 (-3.7A) MG A 404 ( 2.7A)C6M A 401 (-2.9A) | 0.41A | 2f89F-6b07A:47.7 | 2f89F-6b07A:14.23 |