SIMILAR PATTERNS OF AMINO ACIDS FOR 2F6D_A_ACRA995_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lf9 GLUCOAMYLASE

(Thermoanaerobacterium
thermosaccharolyticum) 		PF00723
(Glyco_hydro_15)
PF09137
(Glucodextran_N) 		4 TRP A 437
GLU A 438
LEU A 652
TRP A 654
 ACR  A 700 (-4.8A)
ACR  A 700 (-3.5A)
None
None
 0.46A 2f6dA-1lf9A:
29.5		 2f6dA-1lf9A:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ulv GLUCODEXTRANASE

(Arthrobacter
globiformis) 		PF00723
(Glyco_hydro_15)
PF09136
(Glucodextran_B)
PF09137
(Glucodextran_N)
PF09985
(Glucodextran_C) 		4 TRP A 429
GLU A 430
LEU A 653
TRP A 655
 ACR  A3000 (-4.9A)
ACR  A3000 (-3.6A)
None
None
 0.38A 2f6dA-1ulvA:
31.1		 2f6dA-1ulvA:
19.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vn7 GLUCOAMYLASE

(Trichoderma
reesei) 		PF00686
(CBM_20)
PF00723
(Glyco_hydro_15) 		4 TRP A 178
GLU A 179
LEU A 419
TRP A 421
 None
BTB  A 620 (-3.6A)
None
None
 0.29A 2f6dA-2vn7A:
45.4		 2f6dA-2vn7A:
29.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3eqa GLUCOAMYLASE

(Aspergillus
niger) 		PF00723
(Glyco_hydro_15) 		4 TRP A 202
GLU A 203
LEU A 439
TRP A 441
 None
TRS  A 701 ( 3.8A)
None
None
 0.15A 2f6dA-3eqaA:
46.5		 2f6dA-3eqaA:
37.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r7k HYPOTHETICAL PROTEIN
JHP0584

(Helicobacter
pylori) 		no annotation 4 TRP A  99
GLU A 133
LEU A 159
TRP A 158
 None
 1.40A 2f6dA-4r7kA:
0.0		 2f6dA-4r7kA:
18.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhv GLUCOAMYLASE

(Penicillium
oxalicum) 		no annotation 4 TRP A 212
GLU A 213
LEU A 451
TRP A 453
 None
B3P  A 652 (-3.7A)
None
None
 0.20A 2f6dA-6fhvA:
44.5		 2f6dA-6fhvA:
11.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhw GLUCOAMYLASE P

(Amorphotheca
resinae) 		no annotation 4 TRP A 207
GLU A 208
LEU A 447
TRP A 449
 None
ACR  A 801 (-3.9A)
None
None
 0.28A 2f6dA-6fhwA:
45.3		 2f6dA-6fhwA:
10.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frv GLUCOAMYLASE

(Aspergillus
niger) 		no annotation 4 TRP A 202
GLU A 203
LEU A 439
TRP A 441
 None
 0.27A 2f6dA-6frvA:
46.0		 2f6dA-6frvA:
11.60