SIMILAR PATTERNS OF AMINO ACIDS FOR 2F6D_A_ACRA995

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lf9 GLUCOAMYLASE

(Thermoanaerobacterium
thermosaccharolyticum)
PF00723
(Glyco_hydro_15)
PF09137
(Glucodextran_N)
5 ALA A 319
TRP A 341
ARG A 343
ASP A 344
GLY A 392
ACR  A 700 (-3.2A)
ACR  A 700 (-3.6A)
ACR  A 700 (-3.6A)
ACR  A 700 (-3.0A)
None
0.59A 2f6dA-1lf9A:
29.5
2f6dA-1lf9A:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lf9 GLUCOAMYLASE

(Thermoanaerobacterium
thermosaccharolyticum)
PF00723
(Glyco_hydro_15)
PF09137
(Glucodextran_N)
10 ALA A 319
TYR A 337
TRP A 341
ARG A 343
ASP A 344
GLU A 439
ARG A 575
TYR A 581
TRP A 599
GLU A 636
ACR  A 700 (-3.2A)
ACR  A 700 (-4.3A)
ACR  A 700 (-3.6A)
ACR  A 700 (-3.6A)
ACR  A 700 (-3.0A)
ACR  A 700 (-3.7A)
ACR  A 700 (-3.0A)
ACR  A 700 (-3.7A)
None
None
0.30A 2f6dA-1lf9A:
29.5
2f6dA-1lf9A:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lf9 GLUCOAMYLASE

(Thermoanaerobacterium
thermosaccharolyticum)
PF00723
(Glyco_hydro_15)
PF09137
(Glucodextran_N)
5 ALA A 319
TYR A 337
TRP A 390
TYR A 581
GLU A 636
ACR  A 700 (-3.2A)
ACR  A 700 (-4.3A)
ACR  A 700 ( 3.8A)
ACR  A 700 (-3.7A)
None
0.87A 2f6dA-1lf9A:
29.5
2f6dA-1lf9A:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ulv GLUCODEXTRANASE

(Arthrobacter
globiformis)
PF00723
(Glyco_hydro_15)
PF09136
(Glucodextran_B)
PF09137
(Glucodextran_N)
PF09985
(Glucodextran_C)
5 ALA A 307
TRP A 330
ARG A 332
ASP A 333
GLY A 382
ACR  A3000 (-3.4A)
ACR  A3000 (-3.7A)
ACR  A3000 (-3.7A)
ACR  A3000 (-3.1A)
None
0.70A 2f6dA-1ulvA:
31.1
2f6dA-1ulvA:
19.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ulv GLUCODEXTRANASE

(Arthrobacter
globiformis)
PF00723
(Glyco_hydro_15)
PF09136
(Glucodextran_B)
PF09137
(Glucodextran_N)
PF09985
(Glucodextran_C)
10 ALA A 307
TYR A 326
TRP A 330
ARG A 332
ASP A 333
GLU A 431
ARG A 567
TYR A 573
TRP A 591
GLU A 628
ACR  A3000 (-3.4A)
ACR  A3000 (-3.9A)
ACR  A3000 (-3.7A)
ACR  A3000 (-3.7A)
ACR  A3000 (-3.1A)
ACR  A3000 (-3.5A)
ACR  A3000 (-2.9A)
ACR  A3000 (-3.7A)
None
None
0.49A 2f6dA-1ulvA:
31.1
2f6dA-1ulvA:
19.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2btm PROTEIN
(TRIOSEPHOSPHATE
ISOMERASE)


(Geobacillus
stearothermophilus)
PF00121
(TIM)
5 ALA A 182
TYR A 165
ASP A 181
GLY A 174
GLU A 128
None
1.44A 2f6dA-2btmA:
undetectable
2f6dA-2btmA:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2csd TOPOISOMERASE V

(Methanopyrus
kandleri)
PF13412
(HTH_24)
PF14520
(HHH_5)
5 ALA A 243
ARG A 151
ASP A 153
GLU A  74
ARG A 102
None
1.36A 2f6dA-2csdA:
undetectable
2f6dA-2csdA:
22.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vn7 GLUCOAMYLASE

(Trichoderma
reesei)
PF00686
(CBM_20)
PF00723
(Glyco_hydro_15)
12 ALA A  38
TYR A  47
TRP A  51
ARG A  53
ASP A  54
TRP A 120
GLY A 121
GLU A 180
ARG A 309
TYR A 315
TRP A 321
GLU A 404
BTB  A 620 ( 3.8A)
BTB  A 620 (-3.9A)
BTB  A 620 (-3.8A)
BTB  A 620 (-3.7A)
BTB  A 620 (-2.8A)
None
None
None
BTB  A 620 (-3.6A)
BTB  A 620 ( 4.9A)
None
BTB  A 620 (-4.0A)
0.35A 2f6dA-2vn7A:
45.4
2f6dA-2vn7A:
29.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wpg AMYLOSUCRASE OR
ALPHA AMYLASE


(Xanthomonas
campestris)
PF00128
(Alpha-amylase)
PF11941
(DUF3459)
5 TYR A 115
TRP A 525
GLY A 104
TYR A  95
GLU A 496
None
1.33A 2f6dA-2wpgA:
undetectable
2f6dA-2wpgA:
22.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3d5e PLATELET-ACTIVATING
FACTOR
ACETYLHYDROLASE


(Homo sapiens)
PF03403
(PAF-AH_p_II)
5 TYR A 103
TRP A 203
GLY A 199
ARG A 180
GLU A 178
None
1.35A 2f6dA-3d5eA:
undetectable
2f6dA-3d5eA:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dkh LACCASE-1

(Melanocarpus
albomyces)
PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3)
5 TYR A 125
ARG A 538
ASP A 535
GLY A 120
GLU A 113
None
1.29A 2f6dA-3dkhA:
undetectable
2f6dA-3dkhA:
21.82
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3eqa GLUCOAMYLASE

(Aspergillus
niger)
PF00723
(Glyco_hydro_15)
12 ALA A  63
TYR A  72
TRP A  76
ARG A  78
ASP A  79
TRP A 144
GLY A 145
GLU A 204
ARG A 329
TYR A 335
TRP A 341
GLU A 424
TRS  A 701 ( 3.8A)
TRS  A 701 (-4.5A)
TRS  A 701 (-3.8A)
TRS  A 701 (-3.8A)
TRS  A 701 (-2.8A)
None
None
GOL  A 801 (-3.6A)
GOL  A 801 (-3.3A)
GOL  A 801 ( 4.1A)
None
None
0.24A 2f6dA-3eqaA:
46.5
2f6dA-3eqaA:
37.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hdj PROBABLE ORNITHINE
CYCLODEAMINASE


(Bordetella
pertussis)
PF02423
(OCD_Mu_crystall)
5 ALA A 109
TYR A 281
GLY A 130
ARG A 101
GLU A 233
None
1.15A 2f6dA-3hdjA:
undetectable
2f6dA-3hdjA:
20.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3on6 UNCHARACTERIZED
PROTEIN


(Bacteroides
ovatus)
PF06824
(Glyco_hydro_125)
5 TRP A 107
ARG A 109
ASP A 110
TRP A 403
GLU A 439
EDO  A 492 (-3.3A)
None
EDO  A 492 (-3.0A)
None
None
0.77A 2f6dA-3on6A:
24.7
2f6dA-3on6A:
22.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q2r GLIOMA
PATHOGENESIS-RELATED
PROTEIN 1


(Homo sapiens)
PF00188
(CAP)
5 ALA A  52
ARG A  45
TRP A 143
GLY A 179
TYR A 124
None
1.34A 2f6dA-3q2rA:
undetectable
2f6dA-3q2rA:
18.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wkh CELLOBIOSE
2-EPIMERASE


(Rhodothermus
marinus)
PF07221
(GlcNAc_2-epim)
5 ALA A 206
TRP A 265
GLY A 330
GLU A 337
ARG A 280
None
1.01A 2f6dA-3wkhA:
20.5
2f6dA-3wkhA:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4kfz LMO-2

(Homo sapiens)
PF00412
(LIM)
5 TYR A  41
GLY A  68
GLU A  66
ARG A  63
GLU A  52
None
1.18A 2f6dA-4kfzA:
undetectable
2f6dA-4kfzA:
14.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4m8d PUTATIVE
UNCHARACTERIZED
PROTEIN


(Labrenzia
aggregata)
PF04199
(Cyclase)
5 ALA A 126
TYR A 181
GLY A 189
GLU A 143
GLU A 133
None
1.30A 2f6dA-4m8dA:
undetectable
2f6dA-4m8dA:
20.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wva UNCHARACTERIZED
PROTEIN


(Thermus
thermophilus)
PF01204
(Trehalase)
6 TYR A  28
TRP A  32
ASP A  35
TYR A 349
TRP A 355
GLU A 393
TRS  A 501 (-3.7A)
TRS  A 501 (-4.5A)
TRS  A 501 (-3.0A)
TRS  A 501 (-4.3A)
None
TRS  A 501 (-3.7A)
1.17A 2f6dA-4wvaA:
18.9
2f6dA-4wvaA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bn4 NEQ263
V-TYPE ATP SYNTHASE
ALPHA CHAIN


(Nanoarchaeum
equitans)
PF00006
(ATP-synt_ab)
PF02874
(ATP-synt_ab_N)
PF16886
(ATP-synt_ab_Xtn)
5 ALA A 378
GLU A 327
ARG A 294
TYR B 256
GLU A 252
None
None
None
None
MG  A 602 (-3.6A)
1.22A 2f6dA-5bn4A:
undetectable
2f6dA-5bn4A:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d0f UNCHARACTERIZED
PROTEIN


([Candida]
glabrata)
PF06202
(GDE_C)
PF14699
(hGDE_N)
PF14701
(hDGE_amylase)
PF14702
(hGDE_central)
5 ALA A1062
ARG A1077
ASP A1078
TRP A1430
GLU A1492
None
None
None
None
CEX  A2002 ( 4.9A)
0.90A 2f6dA-5d0fA:
17.1
2f6dA-5d0fA:
17.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5goo ALKALINE INVERTASE

(Nostoc sp. PCC
7120)
PF12899
(Glyco_hydro_100)
6 ALA A  36
TYR A  47
ARG A  53
ASP A  54
TYR A 370
GLU A 414
GOL  A 502 ( 4.2A)
FRU  A 501 (-4.3A)
GOL  A 502 (-4.4A)
GOL  A 502 (-2.9A)
FRU  A 501 (-4.8A)
GOL  A 502 ( 4.9A)
1.18A 2f6dA-5gooA:
21.7
2f6dA-5gooA:
22.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5goo ALKALINE INVERTASE

(Nostoc sp. PCC
7120)
PF12899
(Glyco_hydro_100)
6 ALA A  36
TYR A  47
ARG A  53
ASP A  54
TYR A 370
TRP A 376
GOL  A 502 ( 4.2A)
FRU  A 501 (-4.3A)
GOL  A 502 (-4.4A)
GOL  A 502 (-2.9A)
FRU  A 501 (-4.8A)
None
1.14A 2f6dA-5gooA:
21.7
2f6dA-5gooA:
22.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5npu ANC27

(synthetic
construct)
no annotation 5 ALA A 387
ARG A  62
GLY A 218
GLU A 226
ARG A 406
None
1.35A 2f6dA-5npuA:
undetectable
2f6dA-5npuA:
10.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5oie -

(-)
no annotation 5 ALA A  31
TRP A  40
ASP A  43
TYR A 375
TRP A 381
GOL  A 501 ( 4.0A)
GOL  A 501 ( 4.0A)
GOL  A 501 (-2.9A)
None
None
0.97A 2f6dA-5oieA:
17.4
2f6dA-5oieA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5oie -

(-)
no annotation 5 ALA A  31
TYR A  36
ASP A  43
TYR A 375
TRP A 381
GOL  A 501 ( 4.0A)
GOL  A 501 ( 3.7A)
GOL  A 501 (-2.9A)
None
None
1.00A 2f6dA-5oieA:
17.4
2f6dA-5oieA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5z73 ALR0819 PROTEIN

(Nostoc sp. PCC
7120)
no annotation 5 ALA A  37
ARG A  54
ASP A  55
TYR A 371
GLU A 415
GOL  A 501 ( 3.8A)
GOL  A 501 (-4.1A)
GOL  A 501 (-2.7A)
None
None
1.30A 2f6dA-5z73A:
20.4
2f6dA-5z73A:
9.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5z73 ALR0819 PROTEIN

(Nostoc sp. PCC
7120)
no annotation 5 ALA A  37
ARG A  54
ASP A  55
TYR A 371
TRP A 377
GOL  A 501 ( 3.8A)
GOL  A 501 (-4.1A)
GOL  A 501 (-2.7A)
None
None
1.03A 2f6dA-5z73A:
20.4
2f6dA-5z73A:
9.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c9m N-ALPHA-ACETYLTRANSF
ERASE 15, NATA
AUXILIARY SUBUNIT


(Homo sapiens)
no annotation 5 ALA A 808
ASP A 811
GLU A 680
ARG A 714
GLU A 710
None
1.40A 2f6dA-6c9mA:
2.3
2f6dA-6c9mA:
9.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhv GLUCOAMYLASE

(Penicillium
oxalicum)
no annotation 12 ALA A  66
TYR A  75
TRP A  79
ARG A  81
ASP A  82
TRP A 154
GLY A 155
GLU A 214
ARG A 341
TYR A 347
TRP A 353
GLU A 436
B3P  A 652 ( 3.9A)
B3P  A 652 (-4.1A)
B3P  A 652 ( 4.1A)
B3P  A 652 (-4.0A)
B3P  A 652 (-2.8A)
B3P  A 652 (-4.3A)
None
B3P  A 652 (-3.4A)
B3P  A 652 (-2.8A)
B3P  A 652 ( 3.8A)
None
B3P  A 652 ( 4.6A)
0.44A 2f6dA-6fhvA:
44.5
2f6dA-6fhvA:
11.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhw GLUCOAMYLASE P

(Amorphotheca
resinae)
no annotation 12 ALA A  67
TYR A  76
TRP A  80
ARG A  82
ASP A  83
TRP A 149
GLY A 150
GLU A 209
ARG A 335
TYR A 341
TRP A 347
GLU A 432
ACR  A 801 (-3.5A)
ACR  A 801 (-4.3A)
ACR  A 801 (-3.3A)
ACR  A 801 (-4.0A)
ACR  A 801 (-2.7A)
ACR  A 801 (-3.7A)
ACR  A 801 (-3.1A)
ACR  A 801 (-3.9A)
ACR  A 801 (-2.8A)
ACR  A 801 ( 3.9A)
None
ACR  A 801 (-4.4A)
0.35A 2f6dA-6fhwA:
45.3
2f6dA-6fhwA:
10.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frv GLUCOAMYLASE

(Aspergillus
niger)
no annotation 12 ALA A  63
TYR A  72
TRP A  76
ARG A  78
ASP A  79
TRP A 144
GLY A 145
GLU A 204
ARG A 329
TYR A 335
TRP A 341
GLU A 424
None
0.24A 2f6dA-6frvA:
46.0
2f6dA-6frvA:
11.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lf9 GLUCOAMYLASE

(Thermoanaerobacterium
thermosaccharolyticum)
PF00723
(Glyco_hydro_15)
PF09137
(Glucodextran_N)
4 TRP A 437
GLU A 438
LEU A 652
TRP A 654
ACR  A 700 (-4.8A)
ACR  A 700 (-3.5A)
None
None
0.46A 2f6dA-1lf9A:
29.5
2f6dA-1lf9A:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ulv GLUCODEXTRANASE

(Arthrobacter
globiformis)
PF00723
(Glyco_hydro_15)
PF09136
(Glucodextran_B)
PF09137
(Glucodextran_N)
PF09985
(Glucodextran_C)
4 TRP A 429
GLU A 430
LEU A 653
TRP A 655
ACR  A3000 (-4.9A)
ACR  A3000 (-3.6A)
None
None
0.38A 2f6dA-1ulvA:
31.1
2f6dA-1ulvA:
19.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vn7 GLUCOAMYLASE

(Trichoderma
reesei)
PF00686
(CBM_20)
PF00723
(Glyco_hydro_15)
4 TRP A 178
GLU A 179
LEU A 419
TRP A 421
None
BTB  A 620 (-3.6A)
None
None
0.29A 2f6dA-2vn7A:
45.4
2f6dA-2vn7A:
29.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3eqa GLUCOAMYLASE

(Aspergillus
niger)
PF00723
(Glyco_hydro_15)
4 TRP A 202
GLU A 203
LEU A 439
TRP A 441
None
TRS  A 701 ( 3.8A)
None
None
0.15A 2f6dA-3eqaA:
46.5
2f6dA-3eqaA:
37.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r7k HYPOTHETICAL PROTEIN
JHP0584


(Helicobacter
pylori)
no annotation 4 TRP A  99
GLU A 133
LEU A 159
TRP A 158
None
1.40A 2f6dA-4r7kA:
0.0
2f6dA-4r7kA:
18.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhv GLUCOAMYLASE

(Penicillium
oxalicum)
no annotation 4 TRP A 212
GLU A 213
LEU A 451
TRP A 453
None
B3P  A 652 (-3.7A)
None
None
0.20A 2f6dA-6fhvA:
44.5
2f6dA-6fhvA:
11.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fhw GLUCOAMYLASE P

(Amorphotheca
resinae)
no annotation 4 TRP A 207
GLU A 208
LEU A 447
TRP A 449
None
ACR  A 801 (-3.9A)
None
None
0.28A 2f6dA-6fhwA:
45.3
2f6dA-6fhwA:
10.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6frv GLUCOAMYLASE

(Aspergillus
niger)
no annotation 4 TRP A 202
GLU A 203
LEU A 439
TRP A 441
None
0.27A 2f6dA-6frvA:
46.0
2f6dA-6frvA:
11.60