SIMILAR PATTERNS OF AMINO ACIDS FOR 2EIM_N_CHDN1604

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1dgj ALDEHYDE
OXIDOREDUCTASE

(Desulfovibrio
desulfuricans) 		PF00111
(Fer2)
PF01315
(Ald_Xan_dh_C)
PF01799
(Fer2_2)
PF02738
(Ald_Xan_dh_C2) 		5 ARG A 535
GLY A 699
GLY A 866
GLN A 657
THR A 706
 MCN  A 914 ( 4.0A)
MCN  A 914 (-4.6A)
MCN  A 914 (-3.6A)
MCN  A 914 (-3.7A)
None
 1.26A 2eimG-1dgjA:
0.0
2eimN-1dgjA:
0.0
2eimO-1dgjA:
0.0		 2eimG-1dgjA:
6.46
2eimN-1dgjA:
20.43
2eimO-1dgjA:
13.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1k5s PENICILLIN G ACYLASE
BETA SUBUNIT

(Escherichia
coli) 		PF01804
(Penicil_amidase) 		5 PHE B 531
GLY B 532
MET B 485
GLU B 482
THR B 481
 None
 1.16A 2eimG-1k5sB:
0.0
2eimN-1k5sB:
0.2
2eimO-1k5sB:
0.0		 2eimG-1k5sB:
12.50
2eimN-1k5sB:
20.53
2eimO-1k5sB:
17.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1n5x XANTHINE
DEHYDROGENASE

(Bos taurus) 		PF00111
(Fer2)
PF00941
(FAD_binding_5)
PF01315
(Ald_Xan_dh_C)
PF01799
(Fer2_2)
PF02738
(Ald_Xan_dh_C2)
PF03450
(CO_deh_flav_C) 		5 ARG A 912
PHE A 798
GLY A 800
GLN A1040
THR A1036
 MTE  A3003 ( 3.4A)
MTE  A3003 (-3.6A)
None
MTE  A3003 (-3.6A)
None
 1.45A 2eimG-1n5xA:
0.0
2eimN-1n5xA:
0.3
2eimO-1n5xA:
0.0		 2eimG-1n5xA:
5.06
2eimN-1n5xA:
17.39
2eimO-1n5xA:
10.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2a4m TRYPTOPHANYL-TRNA
SYNTHETASE II

(Deinococcus
radiodurans) 		PF00579
(tRNA-synt_1b) 		5 ARG A 203
GLY A  42
GLY A 169
GLN A 200
THR A  27
 None
 1.46A 2eimG-2a4mA:
0.0
2eimN-2a4mA:
0.0
2eimO-2a4mA:
0.0		 2eimG-2a4mA:
15.15
2eimN-2a4mA:
21.94
2eimO-2a4mA:
20.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2buf ACETYLGLUTAMATE
KINASE

(Pseudomonas
aeruginosa) 		PF00696
(AA_kinase) 		5 ARG A  90
GLY A 105
GLY A  67
GLN A  71
GLU A  40
 NLG  A1302 (-4.3A)
None
NLG  A1302 (-3.3A)
None
None
 1.40A 2eimG-2bufA:
0.0
2eimN-2bufA:
0.2
2eimO-2bufA:
0.0		 2eimG-2bufA:
14.04
2eimN-2bufA:
22.06
2eimO-2bufA:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2d42 NON-TOXIC CRYSTAL
PROTEIN

(Bacillus
thuringiensis) 		PF03318
(ETX_MTX2) 		5 GLY A  93
GLY A 123
GLN A  89
THR A 228
THR A 168
 None
 1.24A 2eimG-2d42A:
0.0
2eimN-2d42A:
0.0
2eimO-2d42A:
0.0		 2eimG-2d42A:
14.80
2eimN-2d42A:
20.24
2eimO-2d42A:
22.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wv9 FLAVIVIRIN PROTEASE
NS2B REGULATORY
SUBUNIT, FLAVIVIRIN
PROTEASE NS3
CATALYTIC SUBUNIT

(Murray Valley
encephalitis
virus) 		PF00271
(Helicase_C)
PF00949
(Peptidase_S7)
PF01002
(Flavi_NS2B)
PF07652
(Flavi_DEAD) 		5 ARG A 458
GLY A 460
GLY A 415
GLU A 286
THR A 316
 None
 1.14A 2eimG-2wv9A:
0.0
2eimN-2wv9A:
0.3
2eimO-2wv9A:
0.0		 2eimG-2wv9A:
8.64
2eimN-2wv9A:
20.84
2eimO-2wv9A:
16.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xhy 6-PHOSPHO-BETA-GLUCO
SIDASE BGLA

(Escherichia
coli) 		PF00232
(Glyco_hydro_1) 		5 GLY A 350
GLY A 381
TRP A 351
THR A 435
THR A 434
 None
None
None
None
SO4  A1481 (-4.0A)
 1.29A 2eimG-2xhyA:
0.0
2eimN-2xhyA:
0.0
2eimO-2xhyA:
0.0		 2eimG-2xhyA:
10.37
2eimN-2xhyA:
20.62
2eimO-2xhyA:
18.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bt7 TRNA
(URACIL-5-)-METHYLTR
ANSFERASE

(Escherichia
coli) 		PF05958
(tRNA_U5-meth_tr) 		5 ARG A 230
PHE A 224
GLY A 222
MET A 179
GLU A 170
 None
 1.38A 2eimG-3bt7A:
0.0
2eimN-3bt7A:
0.0
2eimO-3bt7A:
0.0		 2eimG-3bt7A:
13.92
2eimN-3bt7A:
20.94
2eimO-3bt7A:
20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ce6 ADENOSYLHOMOCYSTEINA
SE

(Mycobacterium
tuberculosis) 		PF00670
(AdoHcyase_NAD)
PF05221
(AdoHcyase) 		5 ARG A 406
PHE A  96
GLY A 411
GLY A 359
THR A 269
 None
 1.33A 2eimG-3ce6A:
undetectable
2eimN-3ce6A:
0.0
2eimO-3ce6A:
undetectable		 2eimG-3ce6A:
12.00
2eimN-3ce6A:
22.59
2eimO-3ce6A:
18.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cvr INVASION PLASMID
ANTIGEN

(Shigella
flexneri) 		PF12468
(TTSSLRR)
PF14496
(NEL) 		5 ARG A 375
GLY A 484
MET A 402
GLY A 399
THR A 392
 None
 1.48A 2eimG-3cvrA:
undetectable
2eimN-3cvrA:
0.7
2eimO-3cvrA:
undetectable		 2eimG-3cvrA:
9.07
2eimN-3cvrA:
22.78
2eimO-3cvrA:
18.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fgb UNCHARACTERIZED
PROTEIN Q89ZH8_BACTN

(Bacteroides
thetaiotaomicron) 		PF10282
(Lactonase) 		5 ARG A 112
PHE A 104
GLY A  83
GLY A 153
THR A 129
 None
 1.35A 2eimG-3fgbA:
undetectable
2eimN-3fgbA:
undetectable
2eimO-3fgbA:
undetectable		 2eimG-3fgbA:
13.33
2eimN-3fgbA:
20.44
2eimO-3fgbA:
21.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hdj PROBABLE ORNITHINE
CYCLODEAMINASE

(Bordetella
pertussis) 		PF02423
(OCD_Mu_crystall) 		5 ARG A  41
ARG A  38
GLY A  53
GLY A 285
GLU A 233
 None
 1.24A 2eimG-3hdjA:
undetectable
2eimN-3hdjA:
undetectable
2eimO-3hdjA:
undetectable		 2eimG-3hdjA:
12.86
2eimN-3hdjA:
20.63
2eimO-3hdjA:
20.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jzv UNCHARACTERIZED
PROTEIN RRU_A2000

(Rhodospirillum
rubrum) 		PF07883
(Cupin_2) 		5 GLY A  62
GLY A 118
GLN A  14
GLU A  57
THR A  39
 None
 1.49A 2eimG-3jzvA:
undetectable
2eimN-3jzvA:
undetectable
2eimO-3jzvA:
undetectable		 2eimG-3jzvA:
18.01
2eimN-3jzvA:
14.20
2eimO-3jzvA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3s9b VIPERA RUSSELLI
PROTEINASE RVV-V
GAMMA

(Daboia
siamensis) 		PF00089
(Trypsin) 		5 ARG A 137
ARG A 135
PHE A 161
GLY A 184
GLY A  18
 None
 1.05A 2eimG-3s9bA:
undetectable
2eimN-3s9bA:
undetectable
2eimO-3s9bA:
undetectable		 2eimG-3s9bA:
15.53
2eimN-3s9bA:
19.00
2eimO-3s9bA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wy7 8-AMINO-7-OXONONANOA
TE SYNTHASE

(Mycolicibacterium
smegmatis) 		PF00155
(Aminotran_1_2) 		5 GLY A  94
GLY A 214
GLU A 201
THR A 230
THR A 231
 None
 1.35A 2eimG-3wy7A:
undetectable
2eimN-3wy7A:
0.0
2eimO-3wy7A:
undetectable		 2eimG-3wy7A:
12.93
2eimN-3wy7A:
21.19
2eimO-3wy7A:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cgy DNA TOPOISOMERASE
3-ALPHA

(Homo sapiens) 		PF01131
(Topoisom_bac)
PF01751
(Toprim) 		5 PHE A 559
GLY A 552
MET A 566
GLY A 565
THR A 544
 None
 1.38A 2eimG-4cgyA:
undetectable
2eimN-4cgyA:
2.2
2eimO-4cgyA:
undetectable		 2eimG-4cgyA:
9.36
2eimN-4cgyA:
20.21
2eimO-4cgyA:
12.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cu8 GLYCOSIDE HYDROLASE
2

(Streptococcus
pneumoniae) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 PHE A 444
GLY A 643
GLY A 597
THR A 482
THR A 483
 None
 1.44A 2eimG-4cu8A:
undetectable
2eimN-4cu8A:
undetectable
2eimO-4cu8A:
undetectable		 2eimG-4cu8A:
7.93
2eimN-4cu8A:
20.58
2eimO-4cu8A:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g25 PENTATRICOPEPTIDE
REPEAT-CONTAINING
PROTEIN AT2G32230,
MITOCHONDRIAL

(Arabidopsis
thaliana) 		PF16953
(PRORP)
PF17177
(PPR_long) 		5 PHE A 508
GLY A 504
GLU A 360
THR A 361
THR A 363
 None
 1.27A 2eimG-4g25A:
undetectable
2eimN-4g25A:
undetectable
2eimO-4g25A:
undetectable		 2eimG-4g25A:
9.88
2eimN-4g25A:
19.54
2eimO-4g25A:
16.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4htl BETA-GLUCOSIDE
KINASE

(Listeria
monocytogenes) 		PF00480
(ROK) 		5 PHE A 153
GLY A 133
GLY A 242
THR A 175
THR A 176
 None
 1.47A 2eimG-4htlA:
undetectable
2eimN-4htlA:
0.0
2eimO-4htlA:
undetectable		 2eimG-4htlA:
14.63
2eimN-4htlA:
22.05
2eimO-4htlA:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k1x NADPH:FERREDOXIN
REDUCTASE

(Rhodobacter
capsulatus) 		PF00175
(NAD_binding_1)
PF00970
(FAD_binding_6) 		5 ARG A 203
ARG A 195
GLY A 129
THR A  30
THR A  28
 None
 1.49A 2eimG-4k1xA:
undetectable
2eimN-4k1xA:
0.2
2eimO-4k1xA:
undetectable		 2eimG-4k1xA:
14.74
2eimN-4k1xA:
17.84
2eimO-4k1xA:
24.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lls GERANYLTRANSTRANSFER
ASE

(Roseobacter
denitrificans) 		PF00348
(polyprenyl_synt) 		5 ARG A  44
GLY A 184
MET A 149
GLY A 148
GLN A 175
 IPE  A 301 (-3.1A)
None
GST  A 302 ( 4.1A)
None
None
 1.36A 2eimG-4llsA:
undetectable
2eimN-4llsA:
0.9
2eimO-4llsA:
undetectable		 2eimG-4llsA:
14.29
2eimN-4llsA:
20.31
2eimO-4llsA:
22.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qa9 EPOXIDE HYDROLASE

(Streptomyces
carzinostaticus) 		PF06441
(EHN) 		5 ARG A 151
GLY A 135
GLU A  71
THR A  70
THR A  69
 None
 1.45A 2eimG-4qa9A:
undetectable
2eimN-4qa9A:
undetectable
2eimO-4qa9A:
undetectable		 2eimG-4qa9A:
9.54
2eimN-4qa9A:
21.32
2eimO-4qa9A:
21.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qdg PUTATIVE ADHESIN

(Bacteroides
thetaiotaomicron) 		PF08842
(Mfa2) 		5 ARG A 253
PHE A 119
GLY A 153
MET A 175
THR A  67
 None
 1.40A 2eimG-4qdgA:
undetectable
2eimN-4qdgA:
undetectable
2eimO-4qdgA:
undetectable		 2eimG-4qdgA:
13.97
2eimN-4qdgA:
20.49
2eimO-4qdgA:
23.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4x1z VP1

(Rabbit
hemorrhagic
disease virus) 		PF00915
(Calici_coat) 		5 ARG A 469
ARG A 468
GLY A 424
GLY A 486
THR A 253
 None
 1.33A 2eimG-4x1zA:
undetectable
2eimN-4x1zA:
undetectable
2eimO-4x1zA:
undetectable		 2eimG-4x1zA:
12.26
2eimN-4x1zA:
21.03
2eimO-4x1zA:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gq0 EPITHIOSPECIFIER
PROTEIN

(Arabidopsis
thaliana) 		no annotation 5 ARG B  94
PHE B 100
GLY B  92
GLY B  39
THR B  73
 None
 1.24A 2eimG-5gq0B:
undetectable
2eimN-5gq0B:
undetectable
2eimO-5gq0B:
undetectable		 2eimG-5gq0B:
12.46
2eimN-5gq0B:
20.15
2eimO-5gq0B:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i4e MYOSIN-14,ALPHA-ACTI
NIN A

(Homo sapiens;
Dictyostelium
discoideum) 		PF00063
(Myosin_head)
PF00435
(Spectrin)
PF02736
(Myosin_N) 		5 ARG A 267
PHE A 270
GLY A 470
GLN A 192
GLU A 190
 None
 1.36A 2eimG-5i4eA:
undetectable
2eimN-5i4eA:
2.4
2eimO-5i4eA:
undetectable		 2eimG-5i4eA:
6.43
2eimN-5i4eA:
18.49
2eimO-5i4eA:
13.40