SIMILAR PATTERNS OF AMINO ACIDS FOR 2DR6_A_DM2A2002

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jae ALPHA-AMYLASE

(Tenebrio
molitor) 		PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C) 		5 SER A 396
PHE A 405
GLY A 461
ILE A 428
PHE A 373
 None
 1.18A 2dr6A-1jaeA:
0.0		 2dr6A-1jaeA:
17.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ltt HEAT-LABILE
ENTEROTOXIN, SUBUNIT
A

(Escherichia
coli) 		PF01375
(Enterotoxin_a) 		5 SER A  19
SER A  10
GLY A 126
ILE A  88
PHE A  52
 None
 1.33A 2dr6A-1lttA:
0.0		 2dr6A-1lttA:
10.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1p27 MAGO NASHI PROTEIN
HOMOLOG
RNA-BINDING PROTEIN
8A

(Homo sapiens) 		PF00076
(RRM_1)
PF02792
(Mago_nashi) 		5 SER B  69
SER A 135
PHE A  26
GLY A  30
PHE B  76
 None
 1.27A 2dr6A-1p27B:
3.4		 2dr6A-1p27B:
7.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1s5f CHOLERA ENTEROTOXIN,
A CHAIN

(Vibrio cholerae) 		PF01375
(Enterotoxin_a) 		5 SER A  19
SER A  10
GLY A 126
ILE A  88
PHE A  52
 None
 1.29A 2dr6A-1s5fA:
0.0		 2dr6A-1s5fA:
13.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w37 ORNITHINE
CARBAMOYLTRANSFERASE
, CATABOLIC

(Lactobacillus
hilgardii) 		PF00185
(OTCace)
PF02729
(OTCace_N) 		5 SER A  95
SER A 118
GLY A 128
ILE A 110
PHE A 112
 None
 1.38A 2dr6A-2w37A:
0.0		 2dr6A-2w37A:
16.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3i05 TRYPTOPHANYL-TRNA
SYNTHETASE

(Trypanosoma
brucei) 		PF00579
(tRNA-synt_1b) 		5 GLN A 101
PHE A 144
GLY A 143
ILE A 140
PHE A 152
 None
 1.49A 2dr6A-3i05A:
0.0		 2dr6A-3i05A:
16.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jup PHENAZINE
BIOSYNTHESIS PROTEIN
A/B

(Burkholderia
lata) 		PF03284
(PHZA_PHZB) 		5 SER A 127
PHE A  45
GLY A  66
ILE A  64
PHE A 141
 None
 1.42A 2dr6A-3jupA:
0.0		 2dr6A-3jupA:
9.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3syb GLYCINE-GLUTAMATE
DIPEPTIDE PORIN OPDP

(Pseudomonas
aeruginosa) 		PF03573
(OprD) 		5 SER A 350
GLN A 316
GLY A 443
ILE A 441
PHE A 324
 None
 1.49A 2dr6A-3sybA:
0.0		 2dr6A-3sybA:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3upn PENICILLIN-BINDING
PROTEIN A

(Mycobacterium
tuberculosis) 		PF00905
(Transpeptidase) 		5 GLN A 143
SER A 180
GLN A 151
GLY A 153
ILE A 478
 None
 1.34A 2dr6A-3upnA:
undetectable		 2dr6A-3upnA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zbq PHIKZ039

(Pseudomonas
virus phiKZ) 		no annotation 5 SER A 158
GLN A 121
SER A 129
GLY A 282
ILE A 240
 None
 1.50A 2dr6A-3zbqA:
undetectable		 2dr6A-3zbqA:
14.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bnn CAPSID PROTEIN VP1
CAPSID PROTEIN VP3

(Enterovirus D) 		PF00073
(Rhv) 		5 SER C  51
SER C 103
PHE A  62
ILE C  40
PHE C 222
 None
 1.33A 2dr6A-5bnnC:
undetectable		 2dr6A-5bnnC:
14.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bul FLAVIN-DEPENDENT
HALOGENASE TRIPLE
MUTANT

(Streptomyces) 		PF04820
(Trp_halogenase) 		5 SER A 338
GLN A 342
SER A 302
GLY A  15
PHE A 295
 None
None
None
FAD  A 501 (-3.3A)
FAD  A 501 (-4.7A)
 1.31A 2dr6A-5bulA:
0.7		 2dr6A-5bulA:
17.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ggg PROTEIN
O-LINKED-MANNOSE
BETA-1,2-N-ACETYLGLU
COSAMINYLTRANSFERASE
1

(Homo sapiens) 		PF03071
(GNT-I)
PF15711
(ILEI) 		5 SER A 247
GLN A 138
PHE A 212
GLY A 222
ILE A 174
 None
 1.46A 2dr6A-5gggA:
undetectable		 2dr6A-5gggA:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ikg DYE-DECOLORIZING
PEROXIDASE

(Auricularia
auricula-judae) 		PF04261
(Dyp_perox) 		5 SER A 150
GLN A 218
PHE A 216
GLY A 431
ILE A 114
 None
 1.34A 2dr6A-5ikgA:
0.7		 2dr6A-5ikgA:
18.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t13 CYANURIC ACID
AMIDOHYDROLASE

(Enterobacter
cloacae) 		PF09663
(Amido_AtzD_TrzD) 		5 GLN A 118
PHE A 120
ILE A  80
PHE A  79
PHE A  62
 None
 1.41A 2dr6A-5t13A:
0.4		 2dr6A-5t13A:
16.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t95 PREPHENATE
DEHYDROGENASE 1

(Glycine max) 		PF02153
(PDH) 		5 GLN A 130
GLN A 184
GLY A 229
PHE A  20
PHE A  23
 TYR  A 302 (-4.0A)
TYR  A 302 (-3.5A)
None
NAP  A 301 (-3.6A)
None
 1.02A 2dr6A-5t95A:
2.6		 2dr6A-5t95A:
13.61