SIMILAR PATTERNS OF AMINO ACIDS FOR 2C2B_D_SAMD500

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1itx GLYCOSYL HYDROLASE

(Bacillus
circulans) 		PF00704
(Glyco_hydro_18) 		5 LEU A 398
TRP A 342
GLY A 368
SER A 369
PHE A 370
 None
 1.47A 2c2bC-1itxA:
2.7
2c2bD-1itxA:
0.9		 2c2bC-1itxA:
22.93
2c2bD-1itxA:
22.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wkr POLYPOROPEPSIN

(Irpex lacteus) 		PF00026
(Asp) 		5 ASN A 141
LEU A 142
GLY A 136
SER A 134
PHE A 133
 None
 1.20A 2c2bC-1wkrA:
0.0
2c2bD-1wkrA:
0.0		 2c2bC-1wkrA:
24.08
2c2bD-1wkrA:
24.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2olm NUCLEOPORIN-LIKE
PROTEIN RIP

(Homo sapiens) 		PF01412
(ArfGap) 		5 ASN A  26
LEU A  23
GLY A  45
SER A  46
PHE A  47
 None
 1.40A 2c2bC-2olmA:
0.0
2c2bD-2olmA:
0.0		 2c2bC-2olmA:
14.32
2c2bD-2olmA:
14.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fd3 CHROMOSOME
REPLICATION
INITIATION INHIBITOR
PROTEIN

(Agrobacterium
fabrum) 		PF03466
(LysR_substrate) 		5 ASN A 261
LEU A 260
GLN A 223
SER A 244
PHE A 248
 None
None
None
None
CA  A   1 (-3.7A)
 1.41A 2c2bC-3fd3A:
0.0
2c2bD-3fd3A:
0.0		 2c2bC-3fd3A:
18.55
2c2bD-3fd3A:
18.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4d8u D-CYSTEINE
DESULFHYDRASE

(Salmonella
enterica) 		PF00291
(PALP) 		5 ASN A  50
GLN A  83
GLY A 160
SER A 161
SER A 195
 LLP  A  51 ( 3.1A)
LLP  A  51 ( 3.5A)
None
LLP  A  51 ( 3.4A)
LLP  A  51 ( 2.4A)
 1.24A 2c2bC-4d8uA:
24.7
2c2bD-4d8uA:
23.3		 2c2bC-4d8uA:
20.90
2c2bD-4d8uA:
20.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ovs TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT

(Sulfurospirillum
deleyianum) 		PF03480
(DctP) 		5 LEU A 101
GLY A 233
SER A  88
SER A  90
PHE A  89
 None
None
SIN  A 401 ( 3.5A)
None
None
 1.43A 2c2bC-4ovsA:
0.0
2c2bD-4ovsA:
0.0		 2c2bC-4ovsA:
20.92
2c2bD-4ovsA:
20.92