SIMILAR PATTERNS OF AMINO ACIDS FOR 1YC2_B_NCAB508_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ggl PROTEIN (CELLULAR
RETINOL-BINDING
PROTEIN III)

(Homo sapiens) 		PF00061
(Lipocalin) 		4 GLN A 128
LEU A 117
GLN A  97
TYR A  19
 None
 1.41A 1yc2B-1gglA:
0.0
1yc2C-1gglA:
0.0		 1yc2B-1gglA:
18.52
1yc2C-1gglA:
18.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ivh ISOVALERYL-COA
DEHYDROGENASE

(Homo sapiens) 		PF00441
(Acyl-CoA_dh_1)
PF02770
(Acyl-CoA_dh_M)
PF02771
(Acyl-CoA_dh_N) 		4 GLN A  17
LEU A  81
TYR A 312
GLN A 309
 None
 1.30A 1yc2B-1ivhA:
0.0
1yc2C-1ivhA:
0.0		 1yc2B-1ivhA:
23.31
1yc2C-1ivhA:
23.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lpj RETINOL-BINDING
PROTEIN IV, CELLULAR

(Homo sapiens) 		PF00061
(Lipocalin) 		4 GLN A 128
LEU A 117
GLN A  97
TYR A  19
 None
 1.48A 1yc2B-1lpjA:
0.0
1yc2C-1lpjA:
0.0		 1yc2B-1lpjA:
19.29
1yc2C-1lpjA:
19.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m0w GLUTATHIONE
SYNTHETASE

(Saccharomyces
cerevisiae) 		PF03199
(GSH_synthase)
PF03917
(GSH_synth_ATP) 		4 GLN A 319
LEU A 104
TYR A 293
TYR A 284
 None
 1.14A 1yc2B-1m0wA:
0.1
1yc2C-1m0wA:
1.4		 1yc2B-1m0wA:
19.58
1yc2C-1m0wA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mro METHYL-COENZYME M
REDUCTASE

(Methanothermobacter
marburgensis) 		PF02249
(MCR_alpha)
PF02745
(MCR_alpha_N) 		4 GLN A 421
LEU A 468
TYR A 478
GLN A 449
 None
 1.50A 1yc2B-1mroA:
0.0
1yc2C-1mroA:
0.0		 1yc2B-1mroA:
19.47
1yc2C-1mroA:
19.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zt2 DNA PRIMASE LARGE
SUBUNIT

(Sulfolobus
solfataricus) 		PF04104
(DNA_primase_lrg) 		4 GLN B  93
LEU B  54
TYR B  86
TYR B  57
 None
 1.23A 1yc2B-1zt2B:
0.0
1yc2C-1zt2B:
0.0		 1yc2B-1zt2B:
22.06
1yc2C-1zt2B:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jpf HYPOTHETICAL PROTEIN

(Bordetella
parapertussis) 		PF11516
(DUF3220) 		4 GLN A  56
LEU A  55
GLN A  90
TYR A  63
 None
 1.45A 1yc2B-2jpfA:
undetectable
1yc2C-2jpfA:
undetectable		 1yc2B-2jpfA:
20.66
1yc2C-2jpfA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2mfq FIBROBLAST GROWTH
FACTOR RECEPTOR
SUBSTRATE 2
BDNF/NT-3 GROWTH
FACTORS RECEPTOR

(Homo sapiens;
Homo sapiens) 		PF02174
(IRS)
no annotation 		4 LEU A  40
TYR A  59
GLN B 511
TYR A  65
 None
 1.44A 1yc2B-2mfqA:
0.0
1yc2C-2mfqA:
0.0		 1yc2B-2mfqA:
17.23
1yc2C-2mfqA:
17.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2myi EXODEOXYRIBONUCLEASE
III

(Pseudomonas sp.
Lz4W) 		PF03372
(Exo_endo_phos) 		4 LEU A 125
TYR A  94
GLN A  96
TYR A 145
 None
 1.30A 1yc2B-2myiA:
undetectable
1yc2C-2myiA:
undetectable		 1yc2B-2myiA:
21.96
1yc2C-2myiA:
21.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjp CYTOCHROME C1

(Rhodobacter
sphaeroides) 		PF02167
(Cytochrom_C1) 		4 LEU B  50
TYR B  66
GLN B  69
TYR B  32
 None
 1.46A 1yc2B-2qjpB:
undetectable
1yc2C-2qjpB:
undetectable		 1yc2B-2qjpB:
23.72
1yc2C-2qjpB:
23.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w9f CELL DIVISION
PROTEIN KINASE 4

(Homo sapiens) 		PF00069
(Pkinase) 		4 GLN B 123
LEU B 120
TYR B 103
GLN B  98
 None
 1.34A 1yc2B-2w9fB:
undetectable
1yc2C-2w9fB:
undetectable		 1yc2B-2w9fB:
22.46
1yc2C-2w9fB:
22.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3b7c UNCHARACTERIZED
PROTEIN

(Shewanella
oneidensis) 		PF14534
(DUF4440) 		4 LEU A  37
TYR A  29
GLN A  13
TYR A  54
 None
EDO  A 128 (-4.9A)
EDO  A 128 (-3.1A)
None
 1.11A 1yc2B-3b7cA:
undetectable
1yc2C-3b7cA:
undetectable		 1yc2B-3b7cA:
19.38
1yc2C-3b7cA:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gtu GLUTATHIONE
S-TRANSFERASE

(Homo sapiens) 		PF00043
(GST_C)
PF02798
(GST_N) 		4 LEU B  22
TYR B 200
GLN B 205
TYR B  31
 None
 1.33A 1yc2B-3gtuB:
undetectable
1yc2C-3gtuB:
undetectable		 1yc2B-3gtuB:
22.61
1yc2C-3gtuB:
22.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k70 EXODEOXYRIBONUCLEASE
V BETA CHAIN

(Escherichia
coli) 		PF00580
(UvrD-helicase)
PF12705
(PDDEXK_1)
PF13361
(UvrD_C) 		4 GLN B1103
LEU B1046
TYR B1156
GLN B1095
 None
 1.34A 1yc2B-3k70B:
1.9
1yc2C-3k70B:
undetectable		 1yc2B-3k70B:
12.18
1yc2C-3k70B:
12.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n2q SEX PHEROMONE
STAPH-CAM373

(Bacillus cereus) 		PF07537
(CamS) 		4 GLN A 128
LEU A  84
GLN A  91
TYR A 130
 None
 1.48A 1yc2B-3n2qA:
undetectable
1yc2C-3n2qA:
undetectable		 1yc2B-3n2qA:
19.54
1yc2C-3n2qA:
19.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q3q ALKALINE PHOSPHATASE

(Sphingomonas
sp. BSAR-1) 		PF01663
(Phosphodiest) 		4 GLN A 266
LEU A 189
TYR A 257
TYR A 301
 None
 1.45A 1yc2B-3q3qA:
2.4
1yc2C-3q3qA:
undetectable		 1yc2B-3q3qA:
18.41
1yc2C-3q3qA:
18.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k7k CATION EFFLUX SYSTEM
PROTEIN CUSC

(Escherichia
coli) 		PF02321
(OEP) 		4 GLN A 215
LEU A 218
TYR A 163
GLN A 237
 None
 1.45A 1yc2B-4k7kA:
undetectable
1yc2C-4k7kA:
undetectable		 1yc2B-4k7kA:
20.32
1yc2C-4k7kA:
20.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oua LATENT FORM OF PPO4
TYROSINASE

(Agaricus
bisporus) 		PF00264
(Tyrosinase) 		4 GLN B 129
LEU B 281
GLN B  40
TYR B  98
 None
 1.11A 1yc2B-4ouaB:
undetectable
1yc2C-4ouaB:
undetectable		 1yc2B-4ouaB:
18.35
1yc2C-4ouaB:
18.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oua PROTEOLYTICALLY
ACTIVATED FORM OF
PPO4 TYROSINASE

(Agaricus
bisporus) 		PF00264
(Tyrosinase) 		4 GLN A 129
LEU A 281
GLN A  40
TYR A  98
 None
 1.07A 1yc2B-4ouaA:
undetectable
1yc2C-4ouaA:
undetectable		 1yc2B-4ouaA:
21.20
1yc2C-4ouaA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kzt PEPTIDE/NICKEL
TRANSPORT SYSTEM
SUBSTRATE-BINDING
PROTEIN

(Listeria
monocytogenes) 		PF00496
(SBP_bac_5) 		4 GLN A 533
LEU A 540
TYR A 549
TYR A 531
 None
 1.40A 1yc2B-5kztA:
undetectable
1yc2C-5kztA:
undetectable		 1yc2B-5kztA:
19.25
1yc2C-5kztA:
19.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5sy1 STRA6

(Danio rerio) 		PF14752
(RBP_receptor) 		4 GLN A 288
LEU A 291
TYR A 181
GLN A 176
 None
 1.33A 1yc2B-5sy1A:
undetectable
1yc2C-5sy1A:
undetectable		 1yc2B-5sy1A:
15.84
1yc2C-5sy1A:
15.84