SIMILAR PATTERNS OF AMINO ACIDS FOR 1WRK_B_TFPB201_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2w49 TROPONIN C, SKELETAL
MUSCLE

(Gallus gallus) 		PF13499
(EF-hand_7)
PF13833
(EF-hand_8) 		5 MET 0  45
LEU 0  48
GLN 0  50
MET 0  80
MET 0  81
 None
 0.86A 1wrkA-2w490:
13.2
1wrkB-2w490:
13.0		 1wrkA-2w490:
64.77
1wrkB-2w490:
64.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3u0k RCAMP

(Entacmaea
quadricolor) 		PF01353
(GFP)
PF13499
(EF-hand_7) 		5 GLU A 378
ALA A 382
LEU A 333
MET A 345
MET A 366
 None
 1.31A 1wrkA-3u0kA:
10.3
1wrkB-3u0kA:
10.1		 1wrkA-3u0kA:
16.53
1wrkB-3u0kA:
16.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3u0k RCAMP

(Entacmaea
quadricolor) 		PF01353
(GFP)
PF13499
(EF-hand_7) 		5 GLU A 378
ALA A 382
LEU A 333
MET A 365
MET A 366
 None
 0.92A 1wrkA-3u0kA:
10.3
1wrkB-3u0kA:
10.1		 1wrkA-3u0kA:
16.53
1wrkB-3u0kA:
16.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3u0k RCAMP

(Entacmaea
quadricolor) 		PF01353
(GFP)
PF13499
(EF-hand_7) 		5 GLU A 378
ALA A 382
MET A 330
LEU A 333
MET A 345
 None
 0.86A 1wrkA-3u0kA:
10.3
1wrkB-3u0kA:
10.1		 1wrkA-3u0kA:
16.53
1wrkB-3u0kA:
16.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l8v DNA REPAIR AND
RECOMBINATION
PROTEIN RADA

(Pyrococcus
furiosus) 		PF08423
(Rad51) 		5 GLU A 195
GLN A 156
MET A 221
MET A 222
SER A 225
 None
 1.45A 1wrkA-5l8vA:
undetectable
1wrkB-5l8vA:
undetectable		 1wrkA-5l8vA:
16.52
1wrkB-5l8vA:
16.52
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5w88 TROPONIN C, TROPONIN
I

(Homo sapiens) 		PF00992
(Troponin)
PF13833
(EF-hand_8) 		5 MET A  45
LEU A  48
GLN A  50
MET A  60
MET A  81
 9XG  A 201 (-2.4A)
9XG  A 201 ( 4.8A)
None
9XG  A 201 (-4.0A)
9XG  A 201 ( 4.6A)
 1.12A 1wrkA-5w88A:
11.9
1wrkB-5w88A:
11.5		 1wrkA-5w88A:
100.00
1wrkB-5w88A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xcv VH(S112C)-SARAH
CHIMERA,VH(S112C)-SA
RAH CHIMERA
VL-SARAH(S37C)
CHIMERA,VL-SARAH(S37
C) CHIMERA

(Homo sapiens;
Rattus) 		no annotation 5 GLU B 135
GLU B 139
LEU A  11
GLN B 143
MET A 139
 None
 1.31A 1wrkA-5xcvB:
undetectable
1wrkB-5xcvB:
undetectable		 1wrkA-5xcvB:
19.05
1wrkB-5xcvB:
19.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zib -

(-) 		no annotation 5 GLU A 429
ALA A 252
MET A 612
LEU A 613
SER A 302
 None
 1.39A 1wrkA-5zibA:
0.7
1wrkB-5zibA:
1.0		 1wrkA-5zibA:
undetectable
1wrkB-5zibA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zic -

(-) 		no annotation 5 GLU A 429
ALA A 252
MET A 612
LEU A 613
SER A 302
 None
 1.41A 1wrkA-5zicA:
undetectable
1wrkB-5zicA:
undetectable		 1wrkA-5zicA:
undetectable
1wrkB-5zicA:
undetectable