SIMILAR PATTERNS OF AMINO ACIDS FOR 1W0F_A_STRA1499_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a6a HLA CLASS II
HISTOCOMPATIBILITY
ANTIGEN, DR ALPHA
CHAIN

(Homo sapiens) 		PF00993
(MHC_II_alpha)
PF07654
(C1-set) 		4 PHE A 180
ASP A 159
PHE A 153
VAL A  97
 None
 1.20A 1w0fA-1a6aA:
undetectable		 1w0fA-1a6aA:
17.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1iom CITRATE SYNTHASE

(Thermus
thermophilus) 		PF00285
(Citrate_synt) 		4 PHE A 157
ASP A 175
PHE A  43
VAL A 335
 None
 1.01A 1w0fA-1iomA:
0.3		 1w0fA-1iomA:
21.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lla HEMOCYANIN (SUBUNIT
TYPE II)

(Limulus
polyphemus) 		PF00372
(Hemocyanin_M)
PF03722
(Hemocyanin_N)
PF03723
(Hemocyanin_C) 		4 PHE A 119
ASP A 117
PHE A 115
VAL A 111
 None
 1.31A 1w0fA-1llaA:
0.0		 1w0fA-1llaA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1un1 XYLOGLUCAN
ENDOTRANSGLYCOSYLASE

(Populus tremula) 		PF00722
(Glyco_hydro_16)
PF06955
(XET_C) 		4 PHE A 141
ASP A 269
PHE A 151
VAL A 105
 None
 1.45A 1w0fA-1un1A:
0.0		 1w0fA-1un1A:
21.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wn1 DIPEPTIDASE

(Pyrococcus
horikoshii) 		PF00557
(Peptidase_M24)
PF01321
(Creatinase_N) 		4 PHE A 316
ASP A 334
PHE A 255
VAL A 258
 None
 1.31A 1w0fA-1wn1A:
0.0		 1w0fA-1wn1A:
22.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yi7 BETA-XYLOSIDASE,
FAMILY 43 GLYCOSYL
HYDROLASE

(Clostridium
acetobutylicum) 		PF04616
(Glyco_hydro_43) 		4 PHE A 530
ASP A 391
PHE A 390
VAL A 511
 None
 1.33A 1w0fA-1yi7A:
undetectable		 1w0fA-1yi7A:
23.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ct8 METHIONYL-TRNA
SYNTHETASE

(Aquifex
aeolicus) 		PF00133
(tRNA-synt_1)
PF08264
(Anticodon_1)
PF09334
(tRNA-synt_1g) 		4 PHE A 105
ASP A 232
PHE A 231
VAL A 109
 None
 1.33A 1w0fA-2ct8A:
0.0		 1w0fA-2ct8A:
22.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fli RIBULOSE-PHOSPHATE
3-EPIMERASE

(Streptococcus
pyogenes) 		PF00834
(Ribul_P_3_epim) 		4 PHE A  80
ASP A  86
PHE A  64
VAL A  53
 None
 1.10A 1w0fA-2fliA:
0.0		 1w0fA-2fliA:
18.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yia RNA-DIRECTED RNA
POLYMERASE

(Infectious
pancreatic
necrosis virus) 		PF04197
(Birna_RdRp) 		4 PHE A 662
ASP A 665
PHE A 361
VAL A 619
 None
 1.41A 1w0fA-2yiaA:
0.0		 1w0fA-2yiaA:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a5a HEMOGLOBIN V

(Tokunagayusurika
akamusi) 		PF00042
(Globin) 		4 PHE A 151
ASP A  84
PHE A  87
VAL A 139
 None
 1.00A 1w0fA-3a5aA:
undetectable		 1w0fA-3a5aA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ahm OLIGOPEPTIDASE

(Geobacillus sp.
MO-1) 		no annotation 4 PHE A 430
ASP A 428
PHE A 485
VAL A 434
 None
 1.15A 1w0fA-3ahmA:
undetectable		 1w0fA-3ahmA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3apo DNAJ HOMOLOG
SUBFAMILY C MEMBER
10

(Mus musculus) 		PF00085
(Thioredoxin)
PF00226
(DnaJ) 		4 PHE A 371
ASP A 402
PHE A 373
VAL A 415
 None
 1.38A 1w0fA-3apoA:
undetectable		 1w0fA-3apoA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hp7 HEMOLYSIN, PUTATIVE

(Streptococcus
thermophilus) 		PF01479
(S4)
PF01728
(FtsJ) 		4 PHE A 151
ASP A  88
PHE A  96
VAL A 179
 None
 1.33A 1w0fA-3hp7A:
undetectable		 1w0fA-3hp7A:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n2z LYSOSOMAL PRO-X
CARBOXYPEPTIDASE

(Homo sapiens) 		PF05577
(Peptidase_S28) 		4 PHE B 218
ASP B 378
PHE B 380
VAL B 284
 None
 1.41A 1w0fA-3n2zB:
undetectable		 1w0fA-3n2zB:
22.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v0i VOLTAGE-SENSOR
CONTAINING
PHOSPHATASE

(Ciona
intestinalis) 		PF00782
(DSPc)
PF10409
(PTEN_C2) 		4 PHE A 527
ASP A 549
PHE A 529
VAL A 566
 None
 1.23A 1w0fA-3v0iA:
undetectable		 1w0fA-3v0iA:
20.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eyo EXTRACELLULAR
LIGAND-BINDING
RECEPTOR

(Rhodopseudomonas
palustris) 		PF13458
(Peripla_BP_6) 		4 PHE A 314
ASP A 312
PHE A 311
VAL A  57
 None
 1.49A 1w0fA-4eyoA:
undetectable		 1w0fA-4eyoA:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4knh NUP192P

(Chaetomium
thermophilum) 		PF11894
(Nup192) 		4 PHE A 412
ASP A 274
PHE A 276
VAL A 236
 EDO  A1004 ( 4.3A)
EDO  A1004 (-4.0A)
EDO  A1004 (-2.6A)
EDO  A1004 ( 4.3A)
 1.50A 1w0fA-4knhA:
undetectable		 1w0fA-4knhA:
18.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4ny4 CYTOCHROME P450 3A4

(Homo sapiens) 		PF00067
(p450) 		4 PHE A 213
ASP A 217
PHE A 219
VAL A 240
 2QH  A 602 (-4.2A)
None
None
None
 1.01A 1w0fA-4ny4A:
57.1		 1w0fA-4ny4A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ovk PERIPLASMIC BINDING
PROTEIN

(Veillonella
parvula) 		PF01497
(Peripla_BP_2) 		4 PHE A 110
ASP A 112
PHE A 115
VAL A  62
 None
 1.48A 1w0fA-4ovkA:
undetectable		 1w0fA-4ovkA:
21.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rm4 CYTOCHROME P450

(Bacillus
subtilis) 		PF00067
(p450) 		4 PHE A 392
ASP A 134
PHE A 129
VAL A 394
 None
 1.28A 1w0fA-4rm4A:
31.2		 1w0fA-4rm4A:
24.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ru4 TAIL SPIKE PROTEIN
GP49

(Pseudomonas
virus LKA1) 		PF13229
(Beta_helix) 		4 PHE A 442
ASP A 497
PHE A 498
VAL A 478
 None
 1.49A 1w0fA-4ru4A:
undetectable		 1w0fA-4ru4A:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yzf BAND 3 ANION
TRANSPORT PROTEIN

(Homo sapiens) 		PF00955
(HCO3_cotransp) 		4 PHE A 679
ASP A 705
PHE A 702
VAL A 513
 None
 1.31A 1w0fA-4yzfA:
0.0		 1w0fA-4yzfA:
19.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gw7 GLUCOSIDASE YGJK

(Escherichia
coli) 		PF01204
(Trehalase) 		4 PHE A 602
ASP A 597
PHE A 596
VAL A 648
 None
 1.27A 1w0fA-5gw7A:
undetectable		 1w0fA-5gw7A:
20.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wze AMINOPEPTIDASE P

(Pseudomonas
aeruginosa) 		no annotation 4 PHE A 137
ASP A  47
PHE A  50
VAL A  62
 None
 1.50A 1w0fA-5wzeA:
undetectable		 1w0fA-5wzeA:
10.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y4m -

(-) 		no annotation 4 PHE A  48
ASP A  88
PHE A  89
VAL A  40
 None
 0.91A 1w0fA-5y4mA:
undetectable		 1w0fA-5y4mA:
undetectable