SIMILAR PATTERNS OF AMINO ACIDS FOR 1V3E_B_ZMRB2200_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1e8t HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 GLU A 258
TYR A 317
PHE A 364
GLU A 401
ARG A 416
ARG A 498
 None
 0.99A 1v3eB-1e8tA:
49.1		 1v3eB-1e8tA:
31.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1e8t HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 GLU A 258
TYR A 317
PHE A 364
GLU A 401
ARG A 416
TYR A 526
 None
 0.75A 1v3eB-1e8tA:
49.1		 1v3eB-1e8tA:
31.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1e8t HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 TYR A 299
TYR A 317
PHE A 364
GLU A 401
ARG A 416
ARG A 498
 None
 0.87A 1v3eB-1e8tA:
49.1		 1v3eB-1e8tA:
31.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1e8t HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 TYR A 299
TYR A 317
PHE A 364
GLU A 401
ARG A 416
TYR A 526
 None
 0.58A 1v3eB-1e8tA:
49.1		 1v3eB-1e8tA:
31.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vcj NEURAMINIDASE

(Influenza B
virus) 		PF00064
(Neur) 		5 ARG A 116
GLU A 276
ARG A 292
ARG A 374
TYR A 409
 IBA  A   1 (-3.3A)
IBA  A   1 (-3.9A)
IBA  A   1 (-3.5A)
IBA  A   1 (-3.2A)
None
 0.91A 1v3eB-1vcjA:
3.5		 1v3eB-1vcjA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bf6 EXO-ALPHA-SIALIDASE

(Clostridium
perfringens) 		PF13088
(BNR_2) 		5 ARG A 266
TYR A 485
GLU A 539
ARG A 555
ARG A 615
 SIA  A1692 (-2.7A)
SIA  A1692 (-4.7A)
SIA  A1692 ( 3.9A)
SIA  A1692 (-2.9A)
SIA  A1692 (-3.1A)
 0.72A 1v3eB-2bf6A:
9.2		 1v3eB-2bf6A:
24.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bf6 EXO-ALPHA-SIALIDASE

(Clostridium
perfringens) 		PF13088
(BNR_2) 		5 ARG A 266
TYR A 485
GLU A 539
ARG A 615
TYR A 655
 SIA  A1692 (-2.7A)
SIA  A1692 (-4.7A)
SIA  A1692 ( 3.9A)
SIA  A1692 (-3.1A)
SIA  A1692 (-4.2A)
 0.85A 1v3eB-2bf6A:
9.2		 1v3eB-2bf6A:
24.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2f28 SIALIDASE 2

(Homo sapiens) 		PF13088
(BNR_2) 		5 ARG A  21
TYR A 179
GLU A 218
ARG A 237
ARG A 304
 None
 0.76A 1v3eB-2f28A:
26.3		 1v3eB-2f28A:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w20 SIALIDASE A

(Streptococcus
pneumoniae) 		PF13088
(BNR_2) 		5 ARG A 347
TYR A 590
GLU A 647
ARG A 663
ARG A 721
 None
 0.72A 1v3eB-2w20A:
26.1		 1v3eB-2w20A:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w20 SIALIDASE A

(Streptococcus
pneumoniae) 		PF13088
(BNR_2) 		5 ARG A 347
TYR A 590
GLU A 647
ARG A 721
TYR A 752
 None
 0.79A 1v3eB-2w20A:
26.1		 1v3eB-2w20A:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w38 SIALIDASE

(Pseudomonas
aeruginosa) 		PF13088
(BNR_2) 		5 TYR A 146
GLU A 182
ARG A 198
ARG A 260
TYR A 297
 None
 0.88A 1v3eB-2w38A:
7.6		 1v3eB-2w38A:
22.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3sil SIALIDASE

(Salmonella
enterica) 		PF13859
(BNR_3) 		5 ARG A  37
GLU A 231
ARG A 246
ARG A 309
TYR A 342
 PO4  A 499 (-2.7A)
GOL  A 402 (-3.3A)
PO4  A 499 (-2.7A)
PO4  A 499 (-3.0A)
PO4  A 499 (-4.6A)
 0.92A 1v3eB-3silA:
26.3		 1v3eB-3silA:
21.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3t1e HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		8 ARG A 174
GLU A 257
TYR A 298
TYR A 316
PHE A 363
GLU A 400
ARG A 415
TYR A 525
 None
 0.75A 1v3eB-3t1eA:
47.8		 1v3eB-3t1eA:
28.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fzh HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 GLU A 258
TYR A 299
TYR A 317
PHE A 364
ARG A 498
TYR A 526
 None
 0.96A 1v3eB-4fzhA:
47.2		 1v3eB-4fzhA:
27.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fzh HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		5 TYR A 299
TYR A 317
GLU A 401
ARG A 416
ARG A 498
 None
 0.77A 1v3eB-4fzhA:
47.2		 1v3eB-4fzhA:
27.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fzh HEMAGGLUTININ-NEURAM
INIDASE

(Avian
avulavirus 1) 		PF00423
(HN) 		6 TYR A 299
TYR A 317
PHE A 364
GLU A 401
ARG A 498
TYR A 526
 None
 0.95A 1v3eB-4fzhA:
47.2		 1v3eB-4fzhA:
27.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jf7 HEMAGGLUTININ-NEURAM
INIDASE

(Mammalian
rubulavirus 5) 		no annotation 7 ARG D 163
GLU D 247
TYR D 306
PHE D 353
GLU D 390
ARG D 405
ARG D 495
 SO4  D 608 ( 4.1A)
None
None
None
None
SO4  D 608 (-2.6A)
SO4  D 608 (-3.3A)
 0.84A 1v3eB-4jf7D:
51.3		 1v3eB-4jf7D:
28.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jf7 HEMAGGLUTININ-NEURAM
INIDASE

(Mammalian
rubulavirus 5) 		no annotation 7 ARG D 163
GLU D 247
TYR D 306
PHE D 353
GLU D 390
ARG D 495
TYR D 523
 SO4  D 608 ( 4.1A)
None
None
None
None
SO4  D 608 (-3.3A)
None
 0.81A 1v3eB-4jf7D:
51.3		 1v3eB-4jf7D:
28.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4sli INTRAMOLECULAR
TRANS-SIALIDASE

(Macrobdella
decora) 		PF02973
(Sialidase)
PF13088
(BNR_2) 		5 ARG A 293
TYR A 561
GLU A 595
ARG A 611
TYR A 713
 CNP  A 760 (-3.0A)
None
CNP  A 760 ( 4.5A)
CNP  A 760 (-3.0A)
CNP  A 760 (-4.0A)
 0.78A 1v3eB-4sliA:
25.2		 1v3eB-4sliA:
22.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xhb SIALIDASE B

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 ARG A 245
TYR A 489
TYR A 509
GLU A 541
ARG A 557
 NHE  A 702 (-2.7A)
NHE  A 702 ( 4.1A)
None
None
NHE  A 702 (-2.8A)
 0.90A 1v3eB-4xhbA:
21.6		 1v3eB-4xhbA:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xhb SIALIDASE B

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 ARG A 245
TYR A 489
TYR A 509
GLU A 541
TYR A 653
 NHE  A 702 (-2.7A)
NHE  A 702 ( 4.1A)
None
None
NHE  A 702 (-4.8A)
 0.84A 1v3eB-4xhbA:
21.6		 1v3eB-4xhbA:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xhb SIALIDASE B

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 TYR A 489
TYR A 509
GLU A 541
ARG A 557
ARG A 619
 NHE  A 702 ( 4.1A)
None
None
NHE  A 702 (-2.8A)
NHE  A 702 (-2.9A)
 0.60A 1v3eB-4xhbA:
21.6		 1v3eB-4xhbA:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yw5 NEURAMINIDASE C

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 ARG A 290
TYR A 533
TYR A 553
GLU A 584
ARG A 600
 G39  A 801 (-2.6A)
G39  A 801 (-4.5A)
None
G39  A 801 ( 4.7A)
G39  A 801 (-2.9A)
 1.04A 1v3eB-4yw5A:
7.7		 1v3eB-4yw5A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yw5 NEURAMINIDASE C

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 ARG A 290
TYR A 533
TYR A 553
GLU A 584
TYR A 695
 G39  A 801 (-2.6A)
G39  A 801 (-4.5A)
None
G39  A 801 ( 4.7A)
G39  A 801 (-4.4A)
 0.96A 1v3eB-4yw5A:
7.7		 1v3eB-4yw5A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yw5 NEURAMINIDASE C

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 TYR A 533
TYR A 553
GLU A 584
ARG A 600
ARG A 662
 G39  A 801 (-4.5A)
None
G39  A 801 ( 4.7A)
G39  A 801 (-2.9A)
G39  A 801 (-2.9A)
 0.68A 1v3eB-4yw5A:
7.7		 1v3eB-4yw5A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yw5 NEURAMINIDASE C

(Streptococcus
pneumoniae) 		PF02012
(BNR)
PF02973
(Sialidase)
PF13088
(BNR_2) 		5 TYR A 553
PHE A 396
GLU A 584
ARG A 600
ARG A 662
 None
G39  A 801 (-3.9A)
G39  A 801 ( 4.7A)
G39  A 801 (-2.9A)
G39  A 801 (-2.9A)
 1.09A 1v3eB-4yw5A:
7.7		 1v3eB-4yw5A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b2d HN PROTEIN

(Mumps
rubulavirus) 		PF00423
(HN) 		6 ARG A 180
GLU A 264
TYR A 323
PHE A 370
GLU A 407
ARG A 422
 SLT  A 606 (-2.6A)
SLT  A 606 (-2.8A)
SLT  A 606 (-4.6A)
SLT  A 606 (-4.6A)
SLT  A 606 (-3.8A)
SLT  A 606 (-3.0A)
 0.74A 1v3eB-5b2dA:
51.2		 1v3eB-5b2dA:
29.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b2d HN PROTEIN

(Mumps
rubulavirus) 		PF00423
(HN) 		6 ARG A 180
GLU A 264
TYR A 323
PHE A 370
GLU A 407
TYR A 540
 SLT  A 606 (-2.6A)
SLT  A 606 (-2.8A)
SLT  A 606 (-4.6A)
SLT  A 606 (-4.6A)
SLT  A 606 (-3.8A)
SLT  A 606 (-4.7A)
 0.65A 1v3eB-5b2dA:
51.2		 1v3eB-5b2dA:
29.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b2d HN PROTEIN

(Mumps
rubulavirus) 		PF00423
(HN) 		5 GLU A 264
TYR A 323
PHE A 370
GLU A 407
ARG A 180
 SLT  A 606 (-2.8A)
SLT  A 606 (-4.6A)
SLT  A 606 (-4.6A)
SLT  A 606 (-3.8A)
SLT  A 606 (-2.6A)
 1.48A 1v3eB-5b2dA:
51.2		 1v3eB-5b2dA:
29.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b2d HN PROTEIN

(Mumps
rubulavirus) 		PF00423
(HN) 		6 GLU A 264
TYR A 323
PHE A 370
GLU A 407
ARG A 422
ARG A 512
 SLT  A 606 (-2.8A)
SLT  A 606 (-4.6A)
SLT  A 606 (-4.6A)
SLT  A 606 (-3.8A)
SLT  A 606 (-3.0A)
SLT  A 606 (-2.8A)
 0.45A 1v3eB-5b2dA:
51.2		 1v3eB-5b2dA:
29.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b2d HN PROTEIN

(Mumps
rubulavirus) 		PF00423
(HN) 		6 GLU A 264
TYR A 323
PHE A 370
GLU A 407
ARG A 512
TYR A 540
 SLT  A 606 (-2.8A)
SLT  A 606 (-4.6A)
SLT  A 606 (-4.6A)
SLT  A 606 (-3.8A)
SLT  A 606 (-2.8A)
SLT  A 606 (-4.7A)
 0.66A 1v3eB-5b2dA:
51.2		 1v3eB-5b2dA:
29.12
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
6c0m HEMAGGLUTININ-NEURAM
INIDASE

(Human
respirovirus 3) 		no annotation 9 ARG A 192
THR A 193
GLU A 276
TYR A 319
TYR A 337
PHE A 372
GLU A 409
ARG A 424
ARG A 502
 8LM  A 610 (-3.3A)
8LM  A 610 ( 4.6A)
8LM  A 610 (-2.8A)
8LM  A 610 (-3.3A)
8LM  A 610 (-4.5A)
None
8LM  A 610 (-3.9A)
8LM  A 610 (-3.7A)
8LM  A 610 (-2.9A)
 0.68A 1v3eB-6c0mA:
68.7		 1v3eB-6c0mA:
98.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fwf NITRIC-OXIDE
REDUCTASE

(Neisseria
meningitidis) 		no annotation 5 THR A  99
GLU A  91
TYR A 127
PHE A 194
GLU A 126
 None
 1.44A 1v3eB-6fwfA:
undetectable		 1v3eB-6fwfA:
10.91