SIMILAR PATTERNS OF AMINO ACIDS FOR 1TT0_D_ACTD5901

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fbw ENDO-1,4-BETA-GLUCAN
ASE F

([Clostridium]
cellulolyticum) 		PF02011
(Glyco_hydro_48) 		4 GLN A 415
PHE A 321
HIS A 320
ASN A 409
 None
 1.09A 1tt0D-1fbwA:
0.0		 1tt0D-1fbwA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gy7 NUCLEAR TRANSPORT
FACTOR 2

(Saccharomyces
cerevisiae) 		PF02136
(NTF2) 		4 THR A  13
GLN A 101
PHE A  99
HIS A  64
 None
 1.38A 1tt0D-1gy7A:
undetectable		 1tt0D-1gy7A:
12.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xgy K42-41L FAB HEAVY
CHAIN
K42-41L FAB LIGHT
CHAIN

(Mus musculus;
Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set)
PF07654
(C1-set)
PF07686
(V-set) 		4 THR H 137
PHE H 166
HIS H 164
ASN L 137
 None
 1.48A 1tt0D-1xgyH:
undetectable		 1tt0D-1xgyH:
17.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cas CANINE PARVOVIRUS
EMPTY CAPSID (STRAIN
D) VIRAL PROTEIN 2

(Carnivore
protoparvovirus
1) 		PF00740
(Parvo_coat) 		4 GLN A 468
PHE A 185
HIS A 483
ASN A 485
 None
 1.40A 1tt0D-2casA:
0.0		 1tt0D-2casA:
21.95
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2f5v PYRANOSE 2-OXIDASE

(Peniophora sp.
SG) 		PF05199
(GMC_oxred_C) 		5 THR A 169
GLN A 448
PHE A 474
HIS A 548
ASN A 593
 KBG  A1628 ( 3.7A)
KBG  A1628 (-3.0A)
KBG  A1628 (-4.7A)
KBG  A1628 (-3.6A)
KBG  A1628 ( 3.8A)
 0.31A 1tt0D-2f5vA:
64.0		 1tt0D-2f5vA:
99.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2oud DUAL SPECIFICITY
PROTEIN PHOSPHATASE
10

(Homo sapiens) 		PF00782
(DSPc) 		4 THR A 467
PHE A 458
PHE A 391
HIS A 426
 None
 1.32A 1tt0D-2oudA:
0.0		 1tt0D-2oudA:
13.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2oz8 MLL7089 PROTEIN

(Mesorhizobium
japonicum) 		PF13378
(MR_MLE_C) 		4 PHE A 297
PHE A  13
HIS A 323
ASN A 320
 None
 1.05A 1tt0D-2oz8A:
0.0		 1tt0D-2oz8A:
21.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2puz IMIDAZOLONEPROPIONAS
E

(Agrobacterium
fabrum) 		PF01979
(Amidohydro_1) 		4 THR A 336
GLN A 259
PHE A 228
HIS A 191
 None
 0.87A 1tt0D-2puzA:
0.0		 1tt0D-2puzA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2q09 IMIDAZOLONEPROPIONAS
E

(unidentified) 		PF01979
(Amidohydro_1) 		4 THR A 322
GLN A 245
PHE A 214
HIS A 177
 DI6  A 600 (-2.8A)
DI6  A 600 (-3.0A)
DI6  A 600 (-3.5A)
DI6  A 600 (-3.9A)
 0.98A 1tt0D-2q09A:
undetectable		 1tt0D-2q09A:
20.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2r3s UNCHARACTERIZED
PROTEIN

(Nostoc
punctiforme) 		PF00891
(Methyltransf_2)
PF16864
(Dimerisation2) 		4 GLN A 327
PHE A 271
HIS A 242
ASN A 239
 None
None
None
CL  A 335 ( 4.3A)
 1.15A 1tt0D-2r3sA:
2.9		 1tt0D-2r3sA:
19.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2v5d O-GLCNACASE NAGJ

(Clostridium
perfringens) 		PF00754
(F5_F8_type_C)
PF02838
(Glyco_hydro_20b)
PF07555
(NAGidase) 		4 GLN A 750
PHE A 757
HIS A 658
ASN A 695
 None
 0.93A 1tt0D-2v5dA:
1.3		 1tt0D-2v5dA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xut PROTON/PEPTIDE
SYMPORTER FAMILY
PROTEIN

(Shewanella
oneidensis) 		PF00854
(PTR2) 		4 THR A  36
GLN A 341
PHE A  60
ASN A  33
 None
 1.24A 1tt0D-2xutA:
undetectable		 1tt0D-2xutA:
21.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yhe SEC-ALKYL SULFATASE

(Pseudomonas sp.
DSM 6611) 		PF00753
(Lactamase_B)
PF14863
(Alkyl_sulf_dimr)
PF14864
(Alkyl_sulf_C) 		4 GLN A 232
PHE A 250
HIS A 317
ASN A 318
 SO4  A 801 (-3.1A)
None
SO4  A 801 (-4.3A)
SO4  A 801 (-3.8A)
 1.34A 1tt0D-2yheA:
undetectable		 1tt0D-2yheA:
23.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3aqi FERROCHELATASE

(Homo sapiens) 		PF00762
(Ferrochelatase) 		4 THR A 338
GLN A 190
PHE A 377
PHE A 188
 None
 1.20A 1tt0D-3aqiA:
2.4		 1tt0D-3aqiA:
19.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dfr DIHYDROFOLATE
REDUCTASE

(Lactobacillus
casei) 		PF00186
(DHFR_1) 		4 THR A  34
PHE A  30
PHE A  49
ASN A  59
 None
MTX  A 164 ( 4.0A)
MTX  A 164 ( 4.5A)
None
 1.25A 1tt0D-3dfrA:
undetectable		 1tt0D-3dfrA:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hwc CHLOROPHENOL-4-MONOO
XYGENASE COMPONENT 2

(Burkholderia
cepacia) 		PF03241
(HpaB)
PF11794
(HpaB_N) 		4 GLN A3069
PHE A3043
HIS A3105
ASN A3106
 None
 1.39A 1tt0D-3hwcA:
undetectable		 1tt0D-3hwcA:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3me5 CYTOSINE-SPECIFIC
METHYLTRANSFERASE

(Shigella
flexneri) 		PF00145
(DNA_methylase) 		4 THR A 237
PHE A 180
PHE A 175
ASN A 225
 None
 1.50A 1tt0D-3me5A:
2.4		 1tt0D-3me5A:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rpc POSSIBLE
METAL-DEPENDENT
HYDROLASE

(Veillonella
parvula) 		PF12706
(Lactamase_B_2) 		4 PHE A  26
PHE A  36
HIS A 229
ASN A 228
 None
 1.35A 1tt0D-3rpcA:
undetectable		 1tt0D-3rpcA:
19.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wew HTDX DEHYDRATASE

(Mycobacterium
tuberculosis) 		PF01575
(MaoC_dehydratas) 		4 GLN A 113
PHE A  37
HIS A  62
ASN A  65
 None
None
None
MG  A 301 (-3.9A)
 1.44A 1tt0D-3wewA:
1.9		 1tt0D-3wewA:
18.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wew HTDX DEHYDRATASE

(Mycobacterium
tuberculosis) 		PF01575
(MaoC_dehydratas) 		4 THR A  34
PHE A 210
HIS A  62
ASN A  65
 None
None
None
MG  A 301 (-3.9A)
 1.37A 1tt0D-3wewA:
1.9		 1tt0D-3wewA:
18.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zvt D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE

(Actinomadura
sp. R39) 		PF02113
(Peptidase_S13) 		4 THR A 413
GLN A 449
HIS A 440
ASN A 437
 None
 1.19A 1tt0D-3zvtA:
undetectable		 1tt0D-3zvtA:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4a0w T-COMPLEX PROTEIN 1
SUBUNIT BETA

(Bos taurus) 		PF00118
(Cpn60_TCP1) 		4 THR A 229
PHE A 322
PHE A 277
ASN A 279
 None
 1.46A 1tt0D-4a0wA:
undetectable		 1tt0D-4a0wA:
22.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4el8 GLYCOSIDE HYDROLASE
FAMILY 48

(Caldicellulosiruptor
bescii) 		PF02011
(Glyco_hydro_48) 		4 GLN A 416
PHE A 322
HIS A 321
ASN A 410
 None
 1.07A 1tt0D-4el8A:
undetectable		 1tt0D-4el8A:
20.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jkl BETA-GLUCURONIDASE

(Streptococcus
agalactiae) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N) 		4 THR A  85
PHE A 104
PHE A 159
ASN A 163
 None
 1.24A 1tt0D-4jklA:
1.2		 1tt0D-4jklA:
22.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4mif PYRANOSE 2-OXIDASE

(Phanerochaete
chrysosporium) 		PF05199
(GMC_oxred_C) 		5 THR A 160
GLN A 454
PHE A 480
HIS A 553
ASN A 596
 FDA  A 801 (-3.4A)
None
None
FDA  A 801 ( 4.8A)
FDA  A 801 (-4.1A)
 0.24A 1tt0D-4mifA:
48.8		 1tt0D-4mifA:
40.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ovj EXTRACELLULAR
SOLUTE-BINDING
PROTEIN FAMILY 1

(Alicyclobacillus
acidocaldarius) 		PF13416
(SBP_bac_8) 		4 THR A  64
GLN A 109
PHE A  52
ASN A 157
 None
 1.22A 1tt0D-4ovjA:
undetectable		 1tt0D-4ovjA:
20.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pw5 E3 UBIQUITIN-PROTEIN
LIGASE UHRF2

(Homo sapiens) 		PF02182
(SAD_SRA) 		4 THR A 508
GLN A 528
PHE A 495
ASN A 534
 None
 1.27A 1tt0D-4pw5A:
undetectable		 1tt0D-4pw5A:
15.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xwl EXOGLUCANASE S

(Clostridium
cellulovorans) 		PF02011
(Glyco_hydro_48) 		4 GLN A 407
PHE A 313
HIS A 312
ASN A 401
 None
 1.07A 1tt0D-4xwlA:
undetectable		 1tt0D-4xwlA:
22.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zhj MG-CHELATASE SUBUNIT
CHLH

(Synechocystis
sp. PCC 6803) 		PF02514
(CobN-Mg_chel)
PF11965
(DUF3479) 		4 THR A1201
GLN A 999
PHE A1159
ASN A1161
 None
 1.11A 1tt0D-4zhjA:
3.4		 1tt0D-4zhjA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a01 O-GLYCOSYLTRANSFERAS
E

(Drosophila
melanogaster) 		PF13374
(TPR_10)
PF13414
(TPR_11)
PF13844
(Glyco_transf_41) 		4 THR A 850
GLN A 936
HIS A 742
ASN A 765
 None
 1.15A 1tt0D-5a01A:
undetectable		 1tt0D-5a01A:
20.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5egn ESTERASE

(uncultured
bacterium) 		PF12697
(Abhydrolase_6) 		4 THR A  30
GLN A 245
HIS A 242
ASN A  92
 None
 1.43A 1tt0D-5egnA:
undetectable		 1tt0D-5egnA:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kqc PEPTIDASE M23

(Staphylococcus
aureus) 		PF01551
(Peptidase_M23) 		4 THR A  93
GLN A 121
PHE A 178
PHE A 160
 None
 1.13A 1tt0D-5kqcA:
undetectable		 1tt0D-5kqcA:
11.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kyu PROTEIN TRANSPORT
PROTEIN SEC24D

(Homo sapiens) 		PF00626
(Gelsolin)
PF04810
(zf-Sec23_Sec24)
PF04811
(Sec23_trunk)
PF04815
(Sec23_helical)
PF08033
(Sec23_BS) 		4 GLN B 870
PHE B1004
PHE B 885
ASN B 853
 None
 0.96A 1tt0D-5kyuB:
undetectable		 1tt0D-5kyuB:
21.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lw7 ABC TRANSPORTER
ATP-BINDING PROTEIN

(Pyrococcus
abyssi) 		PF00005
(ABC_tran)
PF00037
(Fer4)
PF04068
(RLI) 		4 THR B 382
GLN B 410
HIS B 516
ASN B 377
 None
 1.32A 1tt0D-5lw7B:
undetectable		 1tt0D-5lw7B:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mrv CARBOXYPEPTIDASE O

(Homo sapiens) 		no annotation 4 THR A 214
PHE A 212
PHE A 166
ASN A 163
 None
 1.32A 1tt0D-5mrvA:
0.7		 1tt0D-5mrvA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t3b GLYCOSIDE HYDROLASE

(Bacteroides
plebeius) 		no annotation 4 THR A 401
PHE A 368
PHE A 139
ASN A 447
 None
 1.26A 1tt0D-5t3bA:
undetectable		 1tt0D-5t3bA:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yj6 DOCKERIN TYPE I
REPEAT-CONTAINING
PROTEIN

(Ruminiclostridium
thermocellum) 		no annotation 4 GLN A 443
PHE A 349
HIS A 348
ASN A 437
 None
 1.11A 1tt0D-5yj6A:
undetectable		 1tt0D-5yj6A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6aqf ADENOSINE RECEPTOR
A2A,SOLUBLE
CYTOCHROME
B562,ADENOSINE
RECEPTOR A2A

(Escherichia
coli;
Homo sapiens) 		no annotation 4 THR A  88
PHE A 242
HIS A 250
ASN A 181
 None
None
ZMA  A1201 (-3.9A)
None
 1.40A 1tt0D-6aqfA:
undetectable		 1tt0D-6aqfA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bo6 -

(-) 		no annotation 4 THR A  91
PHE A 110
PHE A 171
ASN A 175
 None
 1.16A 1tt0D-6bo6A:
undetectable		 1tt0D-6bo6A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ehv SCFV ABVANCE:
INCREASING OUR
KNOWLEDGE OF
ANTIBODY STRUCTURAL
SPACE TO ENABLE
FASTER AND BETTER
DECISION MAKING IN
DRUG DISCOVERY

(Homo sapiens) 		no annotation 4 THR X  36
GLN X 224
PHE X 234
ASN X 232
 None
 1.43A 1tt0D-6ehvX:
undetectable		 1tt0D-6ehvX:
18.27