SIMILAR PATTERNS OF AMINO ACIDS FOR 1S19_A_MC9A500_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ddh MHC CLASS I H-2DD
HEAVY CHAIN

(Mus musculus) 		PF00129
(MHC_I)
PF07654
(C1-set) 		4 TYR A 113
SER A   4
ARG A   6
HIS A 263
 None
 1.50A 1s19A-1ddhA:
0.0		 1s19A-1ddhA:
21.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r3n BETA-ALANINE
SYNTHASE

(Lachancea
kluyveri) 		PF01546
(Peptidase_M20)
PF07687
(M20_dimer) 		4 SER A 172
ARG A 166
HIS A 226
HIS A 114
 None
None
ZN  A 500 (-3.2A)
ZN  A 500 (-3.2A)
 1.43A 1s19A-1r3nA:
undetectable		 1s19A-1r3nA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zkl HIGH-AFFINITY
CAMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE 7A

(Homo sapiens) 		PF00233
(PDEase_I) 		4 SER A 236
ARG A 350
HIS A 225
HIS A 181
 None
 1.32A 1s19A-1zklA:
0.0		 1s19A-1zklA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2k1g LIPOPROTEIN SPR

(Escherichia
coli) 		PF00877
(NLPC_P60) 		4 SER A  61
ARG A  86
HIS A 131
HIS A 119
 None
 1.21A 1s19A-2k1gA:
0.0		 1s19A-2k1gA:
20.23
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2o4j VITAMIN D3 RECEPTOR

(Rattus
norvegicus) 		PF00104
(Hormone_recep) 		5 TYR A 143
SER A 233
ARG A 270
HIS A 301
HIS A 393
 VD4  A 500 ( 4.7A)
VD4  A 500 ( 2.8A)
VD4  A 500 ( 4.0A)
VD4  A 500 ( 3.9A)
VD4  A 500 ( 3.9A)
 0.16A 1s19A-2o4jA:
38.8		 1s19A-2o4jA:
89.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2psb YERB PROTEIN

(Bacillus
subtilis) 		PF11258
(DUF3048)
PF17479
(DUF3048_C) 		4 TYR A 199
SER A 212
HIS A 141
HIS A  40
 None
 1.26A 1s19A-2psbA:
undetectable		 1s19A-2psbA:
21.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qb6 EXOPOLYPHOSPHATASE

(Saccharomyces
cerevisiae) 		PF01368
(DHH)
PF02833
(DHHA2) 		4 SER A 204
ARG A 208
HIS A 149
HIS A 148
 GOL  A 804 (-3.2A)
GOL  A 804 (-3.0A)
SO4  A 501 (-4.2A)
MN  A 401 ( 3.3A)
 1.28A 1s19A-2qb6A:
0.0		 1s19A-2qb6A:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2z6v PUTATIVE
UNCHARACTERIZED
PROTEIN

(Mycobacterium
avium) 		PF13469
(Sulfotransfer_3) 		4 TYR A 104
SER A 114
HIS A 175
HIS A 232
 None
 1.49A 1s19A-2z6vA:
0.0		 1s19A-2z6vA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dty OXIDOREDUCTASE,
GFO/IDH/MOCA FAMILY

(Pseudomonas
syringae group
genomosp. 3) 		PF01408
(GFO_IDH_MocA)
PF02894
(GFO_IDH_MocA_C) 		4 SER A 200
ARG A 230
HIS A 174
HIS A 177
 None
 1.40A 1s19A-3dtyA:
0.0		 1s19A-3dtyA:
21.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kw8 PUTATIVE COPPER
OXIDASE

(Streptomyces
coelicolor) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 SER A 120
ARG A 128
HIS A 104
HIS A 156
 None
 0.91A 1s19A-3kw8A:
undetectable		 1s19A-3kw8A:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mdn GLUTAMINE
AMINOTRANSFERASE
CLASS-II DOMAIN
PROTEIN

(Ruegeria
pomeroyi) 		PF13230
(GATase_4) 		4 SER A 208
ARG A 199
HIS A 100
HIS A 111
 None
 1.48A 1s19A-3mdnA:
undetectable		 1s19A-3mdnA:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3no4 CREATININE
AMIDOHYDROLASE

(Nostoc
punctiforme) 		PF02633
(Creatininase) 		4 SER A 216
ARG A 213
HIS A 110
HIS A  71
 None
None
UNL  A 350 ( 4.3A)
UNL  A 350 ( 4.1A)
 1.31A 1s19A-3no4A:
undetectable		 1s19A-3no4A:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3riq TAILSPIKE PROTEIN

(Salmonella
virus 9NA) 		PF09251
(PhageP22-tail) 		4 TYR A 225
ARG A 247
HIS A 214
HIS A 216
 None
 1.49A 1s19A-3riqA:
undetectable		 1s19A-3riqA:
17.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3s0m OXALATE
DECARBOXYLASE OXDC

(Bacillus
subtilis) 		PF00190
(Cupin_1) 		4 TYR A 283
SER A  81
HIS A  95
HIS A 140
 None
None
MN  A 500 ( 3.3A)
MN  A 500 (-3.5A)
 1.46A 1s19A-3s0mA:
undetectable		 1s19A-3s0mA:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3t9w SMALL LACCASE,
MULTI-COPPER OXIDASE

(Amycolatopsis
sp. ATCC 39116) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 SER A 108
ARG A 116
HIS A  92
HIS A 144
 None
 0.90A 1s19A-3t9wA:
undetectable		 1s19A-3t9wA:
20.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tbb SMALL LACCASE,
OXIDOREDUCTASE

(Streptomyces
viridosporus) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 SER A 115
ARG A 123
HIS A  99
HIS A 151
 None
None
CU  A  12 ( 3.3A)
CU  A  12 (-3.4A)
 0.91A 1s19A-3tbbA:
undetectable		 1s19A-3tbbA:
18.38
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wgp VITAMIN D3 RECEPTOR

(Homo sapiens) 		PF00104
(Hormone_recep) 		5 TYR A 143
SER A 237
ARG A 274
HIS A 305
HIS A 397
 ED9  A 501 (-3.7A)
ED9  A 501 (-2.7A)
ED9  A 501 (-2.9A)
ED9  A 501 (-3.9A)
ED9  A 501 (-3.9A)
 0.13A 1s19A-3wgpA:
42.0		 1s19A-3wgpA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b6z FAMILY M14
UNASSIGNED PEPTIDASE

(Burkholderia
cenocepacia) 		PF00246
(Peptidase_M14) 		4 SER A 246
ARG A 245
HIS A 268
HIS A 171
 None
None
ZN  A 385 (-3.2A)
ZN  A 385 ( 3.2A)
 1.49A 1s19A-4b6zA:
undetectable		 1s19A-4b6zA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gyb COPPER OXIDASE

(Streptomyces
lividans) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 SER A 120
ARG A 128
HIS A 104
HIS A 156
 None
 0.97A 1s19A-4gybA:
undetectable		 1s19A-4gybA:
18.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w1t COPPER OXIDASE

(Streptomyces
sviceus) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 SER A 117
ARG A 125
HIS A 101
HIS A 153
 None
None
CU  A 404 (-3.1A)
CU  A 404 (-3.0A)
 0.91A 1s19A-4w1tA:
undetectable		 1s19A-4w1tA:
21.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ymk ACYL-COA DESATURASE
1

(Mus musculus) 		PF00487
(FA_desaturase) 		4 SER A 120
ARG A 154
HIS A 265
HIS A 298
 None
None
ZN  A 402 (-3.4A)
ZN  A 402 (-3.4A)
 1.18A 1s19A-4ymkA:
undetectable		 1s19A-4ymkA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ehf LACCASE

(Antrodiella
faginea) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 TYR A 489
SER A  62
HIS A 450
HIS A 400
 None
None
CU  A 507 (-3.2A)
CU  A 507 ( 3.1A)
 1.46A 1s19A-5ehfA:
undetectable		 1s19A-5ehfA:
18.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mkm TWO-DOMAIN LACCASE

(Streptomyces
griseoflavus) 		no annotation 4 SER A 121
ARG A 129
HIS A 105
HIS A 157
 None
None
CU  A 402 (-3.2A)
CU  A 402 ( 3.2A)
 0.94A 1s19A-5mkmA:
undetectable		 1s19A-5mkmA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nag KYNURENINE
3-MONOOXYGENASE

(Pseudomonas
fluorescens) 		PF01494
(FAD_binding_3) 		4 TYR A 382
SER A 375
HIS A 240
HIS A 191
 None
 1.30A 1s19A-5nagA:
undetectable		 1s19A-5nagA:
20.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tpr 3-DEHYDROQUINATE
SYNTHASE

(Trichormus
variabilis) 		PF01761
(DHQ_synthase) 		4 TYR A 138
SER A 152
HIS A 271
HIS A 287
 None
None
ZN  A 501 (-3.3A)
NAD  A 503 (-3.1A)
 1.44A 1s19A-5tprA:
undetectable		 1s19A-5tprA:
22.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5v4r LA-RELATED PROTEIN 1

(Homo sapiens) 		no annotation 4 TYR A 883
SER A 843
ARG A 847
HIS A 797
 MGT  A1001 (-3.9A)
None
None
None
 1.39A 1s19A-5v4rA:
undetectable		 1s19A-5v4rA:
20.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yh1 -

(-) 		no annotation 4 SER A 401
ARG A 360
HIS A 462
HIS A 463
 None
None
MN  A 805 (-3.6A)
None
 1.42A 1s19A-5yh1A:
undetectable		 1s19A-5yh1A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6azt ASPARAGINYL
ENDOPEPTIDASE 1

(Helianthus
annuus) 		no annotation 4 TYR A 316
SER A 242
HIS A 178
HIS A  76
 None
None
SNN  A 177 (-3.6A)
SNN  A 177 ( 3.3A)
 1.40A 1s19A-6aztA:
undetectable		 1s19A-6aztA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c66 UNCHARACTERIZED
PROTEIN

(Thermobifida
fusca) 		no annotation 4 TYR I 182
SER I 156
ARG I 160
HIS I 218
 None
 1.47A 1s19A-6c66I:
undetectable		 1s19A-6c66I:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fob VITAMIN D3 RECEPTOR
A

(Danio rerio) 		no annotation 5 TYR A 175
SER A 265
ARG A 302
HIS A 333
HIS A 423
 None
DZW  A 501 (-3.0A)
DZW  A 501 (-3.8A)
DZW  A 501 (-3.9A)
DZW  A 501 (-4.0A)
 0.17A 1s19A-6fobA:
37.4		 1s19A-6fobA:
undetectable