SIMILAR PATTERNS OF AMINO ACIDS FOR 1RMT_A_ADNA1501

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bd8 P19INK4D CDK4/6
INHIBITOR

(Homo sapiens) 		PF12796
(Ank_2) 		5 ASP A  80
PHE A  51
LEU A  46
THR A  75
THR A  89
 None
 1.37A 1rmtA-1bd8A:
0.0		 1rmtA-1bd8A:
21.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cc1 HYDROGENASE (LARGE
SUBUNIT)

(Desulfomicrobium
baculatum) 		PF00374
(NiFeSe_Hases) 		5 ASP L 258
THR L  94
GLY L  97
THR L 262
TYR L 260
 None
 1.38A 1rmtA-1cc1L:
0.0		 1rmtA-1cc1L:
17.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ehk BA3-TYPE
CYTOCHROME-C OXIDASE

(Thermus
thermophilus) 		PF00115
(COX1) 		5 PHE A 135
THR A 231
GLY A 232
THR A  70
TYR A 133
 None
None
None
None
HEM  A 800 ( 3.9A)
 1.23A 1rmtA-1ehkA:
0.0		 1rmtA-1ehkA:
17.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ehk BA3-TYPE
CYTOCHROME-C OXIDASE

(Thermus
thermophilus) 		PF00115
(COX1) 		5 PHE A 135
TYR A 146
LEU A 208
THR A 231
GLY A 199
 None
 0.99A 1rmtA-1ehkA:
0.0		 1rmtA-1ehkA:
17.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lkf LEUKOCIDIN F SUBUNIT

(Staphylococcus
aureus) 		PF07968
(Leukocidin) 		5 ASP A  26
TYR A 278
LEU A  36
GLY A  57
THR A 292
 None
 1.34A 1rmtA-1lkfA:
undetectable		 1rmtA-1lkfA:
20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1og3 T-CELL
ECTO-ADP-RIBOSYLTRAN
SFERASE 2

(Rattus
norvegicus) 		PF01129
(ART) 		5 PHE A 142
TYR A 198
LEU A 211
THR A 128
ARG A 126
 None
None
None
None
NAD  A1227 (-3.2A)
 1.46A 1rmtA-1og3A:
0.0		 1rmtA-1og3A:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1t3q QUINOLINE
2-OXIDOREDUCTASE
LARGE SUBUNIT

(Pseudomonas
putida) 		PF01315
(Ald_Xan_dh_C)
PF02738
(Ald_Xan_dh_C2) 		5 LEU B 733
THR B 471
GLY B 470
ARG B 472
THR B 420
 None
 1.35A 1rmtA-1t3qB:
0.0		 1rmtA-1t3qB:
13.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1txk GLUCANS BIOSYNTHESIS
PROTEIN G

(Escherichia
coli) 		PF04349
(MdoG) 		5 PHE A 310
LEU A 250
GLY A 246
THR A 338
TYR A 383
 None
 1.14A 1rmtA-1txkA:
0.0		 1rmtA-1txkA:
18.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wwz HYPOTHETICAL PROTEIN
PH1933

(Pyrococcus
horikoshii) 		PF00583
(Acetyltransf_1) 		5 PHE A 139
LEU A 111
GLY A 103
ARG A 104
TYR A 136
 None
None
ACO  A1001 (-3.4A)
ACO  A1001 (-4.2A)
None
 1.02A 1rmtA-1wwzA:
0.3		 1rmtA-1wwzA:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xu1 TUMOR NECROSIS
FACTOR LIGAND
SUPERFAMILY MEMBER
13

(Mus musculus) 		PF00229
(TNF) 		5 ASP A 214
LEU A 156
THR A 151
GLY A 152
THR A 217
 None
 1.33A 1rmtA-1xu1A:
undetectable		 1rmtA-1xu1A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bg9 ACETYLCHOLINE
RECEPTOR PROTEIN,
ALPHA CHAIN

(Torpedo
marmorata) 		PF02931
(Neur_chan_LBD)
PF02932
(Neur_chan_memb) 		5 ASP A 195
THR A 154
GLY A 153
THR A 191
TYR A 190
 None
 1.27A 1rmtA-2bg9A:
undetectable		 1rmtA-2bg9A:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bvt BETA-1,4-MANNANASE

(Cellulomonas
fimi) 		PF02156
(Glyco_hydro_26) 		5 ASP A 246
TYR A 193
THR A 281
GLY A 244
ARG A 171
 None
 1.46A 1rmtA-2bvtA:
2.3		 1rmtA-2bvtA:
20.31
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hf7 CLASS B ACID
PHOSPHATASE

(Escherichia
coli) 		PF03767
(Acid_phosphat_B) 		10 ASP A  46
PHE A  56
TYR A  70
LEU A  71
TRP A  77
THR A 112
GLY A 113
ARG A 114
THR A 192
TYR A 193
 AF3  A 800 ( 3.7A)
None
None
None
None
AF3  A 800 (-3.6A)
AF3  A 800 (-3.5A)
None
None
None
 0.31A 1rmtA-2hf7A:
33.9		 1rmtA-2hf7A:
99.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jsd MATRIX
METALLOPROTEINASE-20

(Homo sapiens) 		PF00413
(Peptidase_M10) 		5 PHE A 218
TYR A 248
GLY A 184
ARG A 186
THR A 212
 None
NGH  A 277 (-4.4A)
CA  A 273 (-4.5A)
None
None
 1.47A 1rmtA-2jsdA:
undetectable		 1rmtA-2jsdA:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jsd MATRIX
METALLOPROTEINASE-20

(Homo sapiens) 		PF00413
(Peptidase_M10) 		5 TYR A 248
LEU A 189
GLY A 184
ARG A 186
THR A 212
 NGH  A 277 (-4.4A)
NGH  A 277 (-4.1A)
CA  A 273 (-4.5A)
None
None
 1.36A 1rmtA-2jsdA:
undetectable		 1rmtA-2jsdA:
23.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vx4 CELLVIBRIO JAPONICUS
MANNANASE CJMAN26C

(Cellvibrio
japonicus) 		PF02156
(Glyco_hydro_26) 		5 ASP A 295
TYR A 239
THR A 337
GLY A 293
ARG A 217
 None
 1.42A 1rmtA-2vx4A:
undetectable		 1rmtA-2vx4A:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2whk MANNAN
ENDO-1,4-BETA-MANNOS
IDASE

(Bacillus
subtilis) 		PF02156
(Glyco_hydro_26) 		5 ASP A 240
TYR A 191
THR A 265
GLY A 238
ARG A 163
 None
None
None
None
TRS  A1338 ( 4.7A)
 1.44A 1rmtA-2whkA:
1.5		 1rmtA-2whkA:
19.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rj8 CARBOHYDRATE OXIDASE

(Microdochium
nivale) 		PF01565
(FAD_binding_4)
PF08031
(BBE) 		5 LEU A 155
THR A 131
GLY A 130
THR A 325
TYR A 425
 None
FAD  A 501 (-3.7A)
FAD  A 501 (-3.2A)
None
FAD  A 501 (-4.6A)
 1.34A 1rmtA-3rj8A:
undetectable		 1rmtA-3rj8A:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4boo ACETYLCHOLINE
RECEPTOR SUBUNIT
ALPHA

(Torpedo
marmorata) 		PF02931
(Neur_chan_LBD)
PF02932
(Neur_chan_memb) 		5 ASP A 195
THR A 154
GLY A 153
THR A 191
TYR A 190
 None
 1.26A 1rmtA-4booA:
undetectable		 1rmtA-4booA:
19.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4j9t DESIGNED UNNATURAL
AMINO ACID DEPENDENT
METALLOPROTEIN

(Micromonospora
viridifaciens) 		PF13088
(BNR_2) 		5 ASP A  55
LEU A 384
THR A 389
GLY A 390
ARG A 392
 None
 1.05A 1rmtA-4j9tA:
undetectable		 1rmtA-4j9tA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4kcb ARABINAN
ENDO-1,5-ALPHA-L-ARA
BINOSIDASE

(uncultured
bacterium) 		PF04616
(Glyco_hydro_43) 		5 PHE A 191
TYR A 110
LEU A 163
GLY A 169
THR A 127
 None
 1.42A 1rmtA-4kcbA:
undetectable		 1rmtA-4kcbA:
19.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nhy 2-OXOGLUTARATE AND
IRON-DEPENDENT
OXYGENASE
DOMAIN-CONTAINING
PROTEIN 1

(Homo sapiens) 		PF10637
(Ofd1_CTDD)
PF13661
(2OG-FeII_Oxy_4) 		5 ASP A 183
TYR A 447
LEU A 153
THR A 181
GLY A 180
 None
 1.46A 1rmtA-4nhyA:
undetectable		 1rmtA-4nhyA:
16.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p0a E3 UBIQUITIN-PROTEIN
LIGASE RNF31

(Homo sapiens) 		PF09409
(PUB) 		5 ASP A 110
PHE A 105
TYR A  82
GLY A 114
ARG A 116
 None
 0.92A 1rmtA-4p0aA:
undetectable		 1rmtA-4p0aA:
23.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4twe N-ACETYLATED-ALPHA-L
INKED ACIDIC
DIPEPTIDASE-LIKE
PROTEIN

(Homo sapiens) 		PF02225
(PA)
PF04253
(TFR_dimer)
PF04389
(Peptidase_M28) 		5 ASP A 555
PHE A 551
GLY A 561
ARG A  58
THR A 550
 None
 1.31A 1rmtA-4tweA:
undetectable		 1rmtA-4tweA:
16.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wfq SUPPRESSOR OF
STEM-LOOP PROTEIN 1

(Saccharomyces
cerevisiae) 		PF04056
(Ssl1) 		5 ASP A 284
PHE A 287
LEU A 308
THR A 280
TYR A 282
 None
 1.23A 1rmtA-4wfqA:
3.3		 1rmtA-4wfqA:
20.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yn5 MANNAN
ENDO-1,4-BETA-MANNOS
IDASE

(Bacillus sp.
JAMB750) 		PF02156
(Glyco_hydro_26) 		5 ASP A 284
TYR A 231
THR A 322
GLY A 282
ARG A 209
 None
None
None
None
CAC  A 501 ( 4.9A)
 1.45A 1rmtA-4yn5A:
undetectable		 1rmtA-4yn5A:
18.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zxo GLYCOSYL HYDROLASE
FAMILY 26

(Bacteroides
ovatus) 		PF02156
(Glyco_hydro_26) 		5 ASP A 257
TYR A 206
THR A 291
GLY A 255
ARG A 184
 None
 1.40A 1rmtA-4zxoA:
1.7		 1rmtA-4zxoA:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i20 UNCHARACTERIZED
PROTEIN

(Starkeya
novella) 		PF00892
(EamA) 		5 PHE A 225
TYR A 166
LEU A  75
THR A  39
TYR A 226
 None
 1.35A 1rmtA-5i20A:
undetectable		 1rmtA-5i20A:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ldt MOMP PORIN

(Campylobacter
jejuni) 		PF05538
(Campylo_MOMP) 		6 PHE A 303
TYR A 276
LEU A 310
GLY A 294
THR A 305
TYR A 304
 None
 1.44A 1rmtA-5ldtA:
undetectable		 1rmtA-5ldtA:
17.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u3j DH511.1 HEAVY CHAIN

(Homo sapiens) 		PF07654
(C1-set)
PF07686
(V-set) 		5 PHE H  91
LEU H  45
GLY H  88
ARG H  89
THR H  93
 None
 1.39A 1rmtA-5u3jH:
undetectable		 1rmtA-5u3jH:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u8q INSULIN-LIKE GROWTH
FACTOR 1 RECEPTOR

(Homo sapiens) 		no annotation 5 ASP A 624
TYR A 632
LEU A 833
ARG A 641
TYR A 628
 None
 1.44A 1rmtA-5u8qA:
undetectable		 1rmtA-5u8qA:
13.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5v9x ATP-DEPENDENT DNA
HELICASE

(Mycolicibacterium
smegmatis) 		no annotation 5 PHE A  20
LEU A  60
TRP A  35
GLY A  53
THR A  22
 ANP  A 901 ( 4.9A)
None
None
ANP  A 901 (-3.3A)
None
 1.33A 1rmtA-5v9xA:
undetectable		 1rmtA-5v9xA:
17.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xeq NEUROLIGIN-2

(Homo sapiens) 		PF00135
(COesterase) 		5 PHE A 196
LEU A 504
TRP A 122
GLY A 186
THR A 211
 None
 1.45A 1rmtA-5xeqA:
undetectable		 1rmtA-5xeqA:
18.27