SIMILAR PATTERNS OF AMINO ACIDS FOR 1RK3_A_VDXA500_1
List of similar pattern of amino acids derived from ASSAM searchHit | Macromolecule/ Organism |
Pfam | Res. | Interface | HETATM | RMSD | Dali Z-score | Seq. Identity (%) | View | Dock | |
---|---|---|---|---|---|---|---|---|---|---|---|
![]() | 1bkd | SON OF SEVENLESS-1 (Homo sapiens) |
PF00617(RasGEF)PF00618(RasGEF_N) | 5 | LEU S 872SER S 876VAL S 927LEU S 795HIS S 827 | None | 1.42A | 1rk3A-1bkdS:undetectable | 1rk3A-1bkdS:21.02 | ||
![]() | 1fiu | TYPE II RESTRICTIONENZYME NGOMI (Neisseriagonorrhoeae) |
PF09015(NgoMIV_restric) | 5 | LEU A 205VAL A 217HIS A 215LEU A 284HIS A 181 | None | 1.46A | 1rk3A-1fiuA:0.0 | 1rk3A-1fiuA:22.12 | ||
![]() | 1ihp | PHYTASE (Aspergillusficuum) |
PF00328(His_Phos_2) | 5 | LEU A 113SER A 116SER A 382VAL A 143LEU A 187 | None | 1.11A | 1rk3A-1ihpA:0.0 | 1rk3A-1ihpA:19.08 | ||
![]() | 1n2o | PANTOTHENATESYNTHETASE (Mycobacteriumtuberculosis) |
PF02569(Pantoate_ligase) | 5 | LEU A 36VAL A 37SER A 65VAL A 181LEU A 165 | NoneNoneBAL A 802 ( 4.9A)NoneNone | 1.30A | 1rk3A-1n2oA:0.0 | 1rk3A-1n2oA:20.71 | ||
![]() | 1u2z | HISTONE-LYSINEN-METHYLTRANSFERASE,H3 LYSINE-79SPECIFIC (Saccharomycescerevisiae) |
PF08123(DOT1) | 5 | TYR A 372LEU A 376VAL A 541SER A 542VAL A 383 | None | 1.45A | 1rk3A-1u2zA:undetectable | 1rk3A-1u2zA:22.70 | ||
![]() | 1ukw | ACYL-COADEHYDROGENASE (Thermusthermophilus) |
PF00441(Acyl-CoA_dh_1)PF02770(Acyl-CoA_dh_M)PF02771(Acyl-CoA_dh_N) | 5 | LEU A 388SER A 188SER A 237VAL A 276LEU A 269 | FAD A 420 (-4.2A)FAD A 420 (-3.0A)NoneNoneNone | 1.33A | 1rk3A-1ukwA:0.4 | 1rk3A-1ukwA:21.45 | ||
![]() | 1xdv | SON OF SEVENLESSPROTEIN HOMOLOG 1 (Homo sapiens) |
PF00169(PH)PF00617(RasGEF)PF00618(RasGEF_N)PF00621(RhoGEF) | 5 | LEU A 872SER A 876VAL A 927LEU A 795HIS A 827 | None | 1.42A | 1rk3A-1xdvA:1.2 | 1rk3A-1xdvA:16.53 | ||
![]() | 2dc0 | PROBABLE AMIDASE (Thermusthermophilus) |
PF01425(Amidase) | 5 | LEU A 288VAL A 289SER A 200SER A 389VAL A 281 | None | 1.38A | 1rk3A-2dc0A:0.0 | 1rk3A-2dc0A:22.90 | ||
![]() | 2h21 | RIBULOSE-1,5BISPHOSPHATECARBOXYLASE/OXYGENASE (Pisum sativum) |
PF00856(SET)PF09273(Rubis-subs-bind) | 5 | VAL A 110SER A 113SER A 141VAL A 234LEU A 219 | None | 1.15A | 1rk3A-2h21A:undetectable | 1rk3A-2h21A:20.81 | ||
![]() | 2hxr | HTH-TYPETRANSCRIPTIONALREGULATOR CYNR (Escherichiacoli) |
PF03466(LysR_substrate) | 5 | VAL A 227SER A 223SER A 103VAL A 168LEU A 165 | None | 1.47A | 1rk3A-2hxrA:undetectable | 1rk3A-2hxrA:23.24 | ||
![]() | 2j3t | TRAFFICKING PROTEINPARTICLE COMPLEXSUBUNIT 1TRAFFICKING PROTEINPARTICLE COMPLEXSUBUNIT 4 (Homo sapiens;Mus musculus) |
PF04099(Sybindin) | 5 | LEU C 88SER D 132SER D 131LEU D 170HIS D 145 | None | 1.50A | 1rk3A-2j3tC:undetectable | 1rk3A-2j3tC:18.60 | ||
![]() | 2o0m | TRANSCRIPTIONALREGULATOR, SORCFAMILY (Enterococcusfaecalis) |
PF04198(Sugar-bind) | 5 | LEU A 124VAL A 123SER A 117SER A 242VAL A 130 | NoneNoneNonePO4 A 401 ( 4.0A)None | 1.37A | 1rk3A-2o0mA:undetectable | 1rk3A-2o0mA:22.50 | ||
![]() | 2o4j | VITAMIN D3 RECEPTOR (Rattusnorvegicus) |
PF00104(Hormone_recep) | 6 | LEU A 229SER A 233SER A 274TRP A 282CYH A 284LEU A 389 | VD4 A 500 ( 4.8A)VD4 A 500 ( 2.8A)VD4 A 500 ( 2.9A)VD4 A 500 ( 3.7A)VD4 A 500 ( 3.4A)None | 1.41A | 1rk3A-2o4jA:41.9 | 1rk3A-2o4jA:100.00 | ||
![]() | 2o4j | VITAMIN D3 RECEPTOR (Rattusnorvegicus) |
PF00104(Hormone_recep) | 12 | TYR A 143LEU A 229VAL A 230SER A 233SER A 271SER A 274TRP A 282CYH A 284VAL A 296HIS A 301LEU A 305HIS A 393 | VD4 A 500 ( 4.7A)VD4 A 500 ( 4.8A)VD4 A 500 ( 4.6A)VD4 A 500 ( 2.8A)VD4 A 500 ( 3.9A)VD4 A 500 ( 2.9A)VD4 A 500 ( 3.7A)VD4 A 500 ( 3.4A)VD4 A 500 ( 4.4A)VD4 A 500 ( 3.9A)NoneVD4 A 500 ( 3.9A) | 0.12A | 1rk3A-2o4jA:41.9 | 1rk3A-2o4jA:100.00 | ||
![]() | 2pmi | CYCLIN-DEPENDENTPROTEIN KINASE PHO85 (Saccharomycescerevisiae) |
PF00069(Pkinase) | 5 | LEU A 180VAL A 179SER A 194VAL A 169LEU A 154 | None | 1.44A | 1rk3A-2pmiA:undetectable | 1rk3A-2pmiA:21.41 | ||
![]() | 2qne | PUTATIVEMETHYLTRANSFERASE (Desulfitobacteriumhafniense) |
PF06253(MTTB) | 5 | TYR A 206LEU A 54VAL A 59SER A 256HIS A 17 | None | 1.47A | 1rk3A-2qneA:undetectable | 1rk3A-2qneA:22.37 | ||
![]() | 2zk7 | GLUCOSE1-DEHYDROGENASERELATED PROTEIN (Thermoplasmaacidophilum) |
PF13561(adh_short_C2) | 5 | TYR A 108VAL A 146SER A 148SER A 131LEU A 245 | None | 1.39A | 1rk3A-2zk7A:undetectable | 1rk3A-2zk7A:22.52 | ||
![]() | 3abg | BILIRUBIN OXIDASE (Albifimbriaverrucaria) |
PF07731(Cu-oxidase_2)PF07732(Cu-oxidase_3) | 5 | SER A 272SER A 231SER A 198HIS A 136HIS A 134 | NoneNoneNone CU A 701 (-3.2A) CU A 702 (-3.1A) | 1.28A | 1rk3A-3abgA:undetectable | 1rk3A-3abgA:19.37 | ||
![]() | 3akc | CYTIDYLATE KINASE (Thermusthermophilus) |
PF02224(Cytidylate_kin) | 5 | TYR A 141SER A 13SER A 179VAL A 97HIS A 89 | NoneADP A 210 (-3.5A)NoneCDP A 209 (-4.3A)None | 1.47A | 1rk3A-3akcA:undetectable | 1rk3A-3akcA:20.67 | ||
![]() | 3egw | RESPIRATORY NITRATEREDUCTASE 1 ALPHACHAIN (Escherichiacoli) |
PF00384(Molybdopterin)PF01568(Molydop_binding)PF14710(Nitr_red_alph_N) | 5 | LEU A 716SER A 714SER A 607HIS A1184HIS A1163 | NoneMD1 A1245 (-3.9A)NoneMD1 A1245 ( 4.6A)MD1 A1245 (-3.4A) | 1.44A | 1rk3A-3egwA:undetectable | 1rk3A-3egwA:12.86 | ||
![]() | 3fed | GLUTAMATECARBOXYPEPTIDASE III (Homo sapiens) |
PF02225(PA)PF04253(TFR_dimer)PF04389(Peptidase_M28) | 5 | TYR A 575LEU A 463SER A 580HIS A 637LEU A 640 | None | 1.25A | 1rk3A-3fedA:undetectable | 1rk3A-3fedA:18.25 | ||
![]() | 3l6a | EUKARYOTICTRANSLATIONINITIATION FACTOR 4GAMMA 2 (Homo sapiens) |
PF02020(W2)PF02847(MA3) | 5 | LEU A 53VAL A 102SER A 64HIS A 133LEU A 128 | NoneNoneNoneSO4 A 366 (-3.6A)None | 1.47A | 1rk3A-3l6aA:undetectable | 1rk3A-3l6aA:22.45 | ||
![]() | 3l7z | PROBABLE EXOSOMECOMPLEX EXONUCLEASE2 (Sulfolobussolfataricus) |
PF01138(RNase_PH)PF03725(RNase_PH_C) | 5 | VAL A 113SER A 117SER A 161VAL A 153LEU A 90 | None | 1.49A | 1rk3A-3l7zA:undetectable | 1rk3A-3l7zA:23.28 | ||
![]() | 3of7 | REGULATOR OFCHROMOSOMECONDENSATION (Saccharomycescerevisiae) |
PF00415(RCC1)PF13540(RCC1_2) | 5 | LEU A 324VAL A 296SER A 342CYH A 354VAL A 318 | None | 1.19A | 1rk3A-3of7A:undetectable | 1rk3A-3of7A:22.04 | ||
![]() | 3wgp | VITAMIN D3 RECEPTOR (Homo sapiens) |
PF00104(Hormone_recep) | 6 | LEU A 233SER A 237SER A 278TRP A 286CYH A 288LEU A 393 | ED9 A 501 ( 4.3A)ED9 A 501 (-2.7A)ED9 A 501 (-2.7A)ED9 A 501 (-3.5A)ED9 A 501 (-3.4A)None | 1.38A | 1rk3A-3wgpA:38.8 | 1rk3A-3wgpA:89.11 | ||
![]() | 3wgp | VITAMIN D3 RECEPTOR (Homo sapiens) |
PF00104(Hormone_recep) | 12 | TYR A 143LEU A 233VAL A 234SER A 237SER A 275SER A 278TRP A 286CYH A 288VAL A 300HIS A 305LEU A 309HIS A 397 | ED9 A 501 (-3.7A)ED9 A 501 ( 4.3A)NoneED9 A 501 (-2.7A)ED9 A 501 (-3.9A)ED9 A 501 (-2.7A)ED9 A 501 (-3.5A)ED9 A 501 (-3.4A)ED9 A 501 (-4.5A)ED9 A 501 (-3.9A)ED9 A 501 (-4.9A)ED9 A 501 (-3.9A) | 0.21A | 1rk3A-3wgpA:38.8 | 1rk3A-3wgpA:89.11 | ||
![]() | 3zif | HEXON PROTEIN (BovinemastadenovirusB) |
PF01065(Adeno_hexon)PF03678(Adeno_hexon_C) | 5 | VAL A 716SER A 719CYH A 825VAL A 728LEU A 697 | None | 1.45A | 1rk3A-3zifA:undetectable | 1rk3A-3zifA:14.74 | ||
![]() | 4czx | PAB-DEPENDENTPOLY(A)-SPECIFICRIBONUCLEASE SUBUNITPAN2 (Neurosporacrassa) |
no annotation | 5 | VAL A 225SER A 198SER A 159CYH A 163VAL A 246 | None | 1.31A | 1rk3A-4czxA:undetectable | 1rk3A-4czxA:19.75 | ||
![]() | 4dn9 | ANTIBIOTICBIOSYNTHESISMONOOXYGENASE (Chloroflexusaurantiacus) |
PF03992(ABM) | 5 | LEU A 65VAL A 68SER A 67HIS A 59LEU A 4 | None | 1.47A | 1rk3A-4dn9A:undetectable | 1rk3A-4dn9A:19.37 | ||
![]() | 4uuc | ANKYRIN REPEAT ANDSOCS BOX PROTEIN 11 (Homo sapiens) |
PF12796(Ank_2)PF13637(Ank_4) | 5 | LEU A 150VAL A 149SER A 143SER A 141LEU A 78 | None | 1.22A | 1rk3A-4uucA:undetectable | 1rk3A-4uucA:20.95 | ||
![]() | 4yhc | STEROL REGULATORYELEMENT-BINDINGPROTEINCLEAVAGE-ACTIVATINGPROTEIN (Schizosaccharomycespombe) |
no annotation | 5 | LEU A 686SER A 680SER A 658LEU A 674HIS A 676 | None | 1.42A | 1rk3A-4yhcA:undetectable | 1rk3A-4yhcA:20.63 | ||
![]() | 5chc | DMSO REDUCTASEFAMILY TYPE IIENZYME,MOLYBDOPTERINSUBUNIT (Azospira oryzae) |
PF00384(Molybdopterin)PF01568(Molydop_binding) | 5 | LEU A 33VAL A 142SER A 143SER A 581HIS A 770 | MD1 A1004 (-4.6A)NoneNoneMD1 A1004 (-3.4A)MD1 A1004 ( 3.5A) | 1.29A | 1rk3A-5chcA:undetectable | 1rk3A-5chcA:16.06 | ||
![]() | 5hb4 | NUP192,NUCLEOPORINNUP192 (Chaetomiumthermophilum) |
PF11894(Nup192) | 5 | LEU B1070SER B1065VAL B1114LEU B1052HIS B1040 | None | 1.43A | 1rk3A-5hb4B:undetectable | 1rk3A-5hb4B:11.44 | ||
![]() | 5iob | BETA-GLUCOSIDASE-RELATED GLYCOSIDASES (Corynebacteriumglutamicum) |
PF00933(Glyco_hydro_3) | 5 | TYR A 298LEU A 321VAL A 337SER A 340VAL A 79 | None | 1.47A | 1rk3A-5iobA:undetectable | 1rk3A-5iobA:21.86 | ||
![]() | 5ixm | LPS-ASSEMBLY PROTEINLPTD (Yersinia pestis) |
PF04453(OstA_C) | 5 | TYR A 359LEU A 315SER A 334SER A 379TRP A 382 | None | 1.50A | 1rk3A-5ixmA:undetectable | 1rk3A-5ixmA:20.77 | ||
![]() | 5iz5 | CYTOSOLICPHOSPHOLIPASE A2DELTA (Homo sapiens) |
no annotation | 5 | LEU B 338SER B 363SER B 358HIS B 729LEU B 683 | None | 1.31A | 1rk3A-5iz5B:undetectable | 1rk3A-5iz5B:17.03 | ||
![]() | 5jx3 | URACIL-DNAGLYCOSYLASE (Vaccinia virus) |
no annotation | 5 | LEU A 170VAL A 152HIS A 151LEU A 57HIS A 147 | None | 1.23A | 1rk3A-5jx3A:undetectable | 1rk3A-5jx3A:21.21 | ||
![]() | 5mdx | PHOTOSYSTEM II CP43REACTION CENTERPROTEIN (Arabidopsisthaliana) |
PF00421(PSII) | 5 | TYR C 297LEU C 95VAL C 185VAL C 176LEU C 202 | CLA C 503 ( 4.7A)CLA C 503 (-4.1A)NoneNoneNone | 1.22A | 1rk3A-5mdxC:undetectable | 1rk3A-5mdxC:21.97 | ||
![]() | 5me3 | SISTER CHROMATIDCOHESION PROTEIN 2 (Eremotheciumgossypii) |
PF12765(Cohesin_HEAT)PF12830(Nipped-B_C) | 5 | TYR A1248LEU A1241VAL A1238SER A1253LEU A1198 | None | 1.41A | 1rk3A-5me3A:undetectable | 1rk3A-5me3A:14.14 | ||
![]() | 5obu | CHAPERONE PROTEINDNAK (Mycoplasmagenitalium) |
no annotation | 5 | LEU A 332VAL A 333SER A 335VAL A 185LEU A 187 | None | 1.26A | 1rk3A-5obuA:undetectable | 1rk3A-5obuA:12.55 | ||
![]() | 5obw | CHAPERONE PROTEINDNAK (Mycoplasmagenitalium) |
no annotation | 5 | LEU A 332VAL A 333SER A 335VAL A 185LEU A 187 | None | 1.24A | 1rk3A-5obwA:undetectable | 1rk3A-5obwA:12.55 | ||
![]() | 5u1s | SEPARIN (Saccharomycescerevisiae) |
PF03568(Peptidase_C50) | 5 | LEU A1065SER A1077SER A1080VAL A1152HIS A1112 | None | 1.13A | 1rk3A-5u1sA:undetectable | 1rk3A-5u1sA:11.34 | ||
![]() | 5xmj | FUMARATE REDUCTASERESPIRATORY COMPLEXSUCCINATEDEHYDROGENASEIRON-SULFUR SUBUNIT (Desulfovibriogigas) |
no annotation | 5 | LEU B 224CYH B 151VAL B 217HIS C 106LEU C 104 | SF4 B 302 (-4.7A)SF4 B 302 (-2.2A)NoneNoneNone | 1.22A | 1rk3A-5xmjB:undetectable | 1rk3A-5xmjB:13.18 | ||
![]() | 5xun | ACETYLTRANSFERASE (Klebsiellapneumoniae) |
PF13673(Acetyltransf_10) | 5 | LEU A 5VAL A 51SER A 52SER A 102LEU A 36 | None | 1.50A | 1rk3A-5xunA:undetectable | 1rk3A-5xunA:21.50 | ||
![]() | 6fob | VITAMIN D3 RECEPTORA (Danio rerio) |
no annotation | 6 | LEU A 261SER A 265SER A 306TRP A 314CYH A 316LEU A 419 | DZW A 501 ( 4.5A)DZW A 501 (-3.0A)DZW A 501 (-2.7A)DZW A 501 (-3.5A)DZW A 501 (-3.4A)None | 1.43A | 1rk3A-6fobA:38.9 | 1rk3A-6fobA:21.66 | ||
![]() | 6fob | VITAMIN D3 RECEPTORA (Danio rerio) |
no annotation | 5 | LEU A 261VAL A 262SER A 303LEU A 338HIS A 333 | DZW A 501 ( 4.5A)NoneDZW A 501 (-3.8A)NoneDZW A 501 (-3.9A) | 1.35A | 1rk3A-6fobA:38.9 | 1rk3A-6fobA:21.66 | ||
![]() | 6fob | VITAMIN D3 RECEPTORA (Danio rerio) |
no annotation | 6 | TYR A 175LEU A 261VAL A 262SER A 265SER A 303LEU A 338 | NoneDZW A 501 ( 4.5A)NoneDZW A 501 (-3.0A)DZW A 501 (-3.8A)None | 1.30A | 1rk3A-6fobA:38.9 | 1rk3A-6fobA:21.66 | ||
![]() | 6fob | VITAMIN D3 RECEPTORA (Danio rerio) |
no annotation | 12 | TYR A 175LEU A 261VAL A 262SER A 265SER A 303SER A 306TRP A 314CYH A 316VAL A 328HIS A 333LEU A 337HIS A 423 | NoneDZW A 501 ( 4.5A)NoneDZW A 501 (-3.0A)DZW A 501 (-3.8A)DZW A 501 (-2.7A)DZW A 501 (-3.5A)DZW A 501 (-3.4A)DZW A 501 ( 4.3A)DZW A 501 (-3.9A)NoneDZW A 501 (-4.0A) | 0.27A | 1rk3A-6fobA:38.9 | 1rk3A-6fobA:21.66 |