SIMILAR PATTERNS OF AMINO ACIDS FOR 1OAF_A_ASCA1253

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jed SULFATE
ADENYLYLTRANSFERASE

(Saccharomyces
cerevisiae) 		PF01747
(ATP-sulfurylase)
PF14306
(PUA_2) 		4 PRO A 260
LEU A 261
HIS A 222
ARG A 278
 None
 1.32A 1oafA-1jedA:
0.0		 1oafA-1jedA:
19.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fja ADENYLYLSULFATE
REDUCTASE, SUBUNIT A

(Archaeoglobus
fulgidus) 		PF00890
(FAD_binding_2)
PF02910
(Succ_DH_flav_C) 		4 LYS A   2
PRO A 514
LEU A 518
ARG A 577
 None
 1.43A 1oafA-2fjaA:
0.0		 1oafA-2fjaA:
18.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fja ADENYLYLSULFATE
REDUCTASE, SUBUNIT A
ADENYLYLSULFATE
REDUCTASE, SUBUNIT B

(Archaeoglobus
fulgidus;
Archaeoglobus
fulgidus) 		PF00890
(FAD_binding_2)
PF02910
(Succ_DH_flav_C)
PF12139
(APS-reductase_C)
PF13187
(Fer4_9) 		4 CYH B 747
PRO B 744
HIS A 566
ARG A 570
 SF4  B1100 (-2.4A)
None
None
None
 1.44A 1oafA-2fjaB:
0.0		 1oafA-2fjaB:
23.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2q14 PHOSPHOHYDROLASE

(Bacteroides
thetaiotaomicron) 		PF01966
(HD) 		4 CYH A 276
PRO A 274
LEU A 277
ARG A 126
 None
 1.30A 1oafA-2q14A:
0.0		 1oafA-2q14A:
20.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjx PROTEIN BIM1

(Saccharomyces
cerevisiae) 		no annotation 4 CYH A  37
LEU A  47
HIS A  76
ARG A  75
 None
 1.48A 1oafA-2qjxA:
0.0		 1oafA-2qjxA:
19.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wkn FORMAMIDASE

(Delftia
acidovorans) 		PF03069
(FmdA_AmdA) 		4 CYH A 157
PRO A 159
LEU A 158
HIS A  21
 None
 1.48A 1oafA-2wknA:
0.0		 1oafA-2wknA:
21.38
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2xj6 ASCORBATE PEROXIDASE

(Glycine max) 		PF00141
(peroxidase) 		5 CYH A  32
PRO A  34
LEU A  35
HIS A 169
ARG A 172
 None
HEM  A1001 (-4.3A)
HEM  A1001 ( 4.3A)
HEM  A1001 (-3.9A)
HEM  A1001 (-4.6A)
 0.12A 1oafA-2xj6A:
46.4		 1oafA-2xj6A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3d0k PUTATIVE
POLY(3-HYDROXYBUTYRA
TE) DEPOLYMERASE
LPQC

(Bordetella
parapertussis) 		no annotation 4 PRO A 219
LEU A 221
HIS A 268
ARG A 234
 None
None
SO4  A 306 (-4.0A)
SO4  A 304 (-3.4A)
 1.43A 1oafA-3d0kA:
0.0		 1oafA-3d0kA:
22.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3e2n CYTOCHROME C
PEROXIDASE

(Pisum sativum;
Saccharomyces
cerevisiae) 		PF00141
(peroxidase) 		4 CYH A  35
PRO A  37
HIS A 174
ARG A 177
 None
HEM  A 296 (-4.7A)
HEM  A 296 (-3.7A)
HEM  A 296 (-4.9A)
 0.35A 1oafA-3e2nA:
35.6		 1oafA-3e2nA:
39.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kz1 RHO GUANINE
NUCLEOTIDE EXCHANGE
FACTOR 11

(Homo sapiens) 		PF00621
(RhoGEF) 		4 LYS A 797
CYH A 793
LEU A 750
ARG A 754
 None
 1.42A 1oafA-3kz1A:
undetectable		 1oafA-3kz1A:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lun NONSENSE-MEDIATED
MRNA DECAY PROTEIN 2

(Saccharomyces
cerevisiae) 		PF02854
(MIF4G) 		4 LYS U 293
PRO U 287
LEU U 286
HIS U 315
 None
 1.42A 1oafA-4lunU:
undetectable		 1oafA-4lunU:
22.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n0f IGG RECEPTOR FCRN
LARGE SUBUNIT P51

(Homo sapiens) 		PF00129
(MHC_I)
PF07654
(C1-set) 		4 CYH A  48
PRO A  47
LEU A  36
HIS A 166
 None
 1.24A 1oafA-4n0fA:
undetectable		 1oafA-4n0fA:
22.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oua LATENT FORM OF PPO4
TYROSINASE

(Agaricus
bisporus) 		PF00264
(Tyrosinase) 		4 PRO B 538
LEU B 529
HIS B 243
ARG B 527
 None
 1.31A 1oafA-4ouaB:
undetectable		 1oafA-4ouaB:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rer 5'-AMP-ACTIVATED
PROTEIN KINASE
SUBUNIT BETA-2
5'-AMP-ACTIVATED
PROTEIN KINASE
SUBUNIT GAMMA-1

(Homo sapiens;
Homo sapiens) 		PF04739
(AMPKBI)
PF16561
(AMPK1_CBM)
PF00571
(CBS) 		4 CYH B 225
PRO B 227
LEU B 229
ARG G 171
 None
 1.31A 1oafA-4rerB:
undetectable		 1oafA-4rerB:
21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fur TRANSCRIPTION
INITIATION FACTOR
TFIID SUBUNIT 2

(Homo sapiens) 		no annotation 4 CYH I 269
PRO I 271
LEU I 270
HIS I 176
 None
 1.26A 1oafA-5furI:
undetectable		 1oafA-5furI:
13.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jw7 E3 UBIQUITIN-PROTEIN
LIGASE SOPA
E3 UBIQUITIN-PROTEIN
LIGASE TRIM56

(Salmonella
enterica;
Homo sapiens) 		PF13599
(Pentapeptide_4)
PF13981
(SopA)
PF13445
(zf-RING_UBOX) 		4 PRO A 334
LEU B  25
HIS A 297
ARG A 296
 None
 1.40A 1oafA-5jw7A:
undetectable		 1oafA-5jw7A:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n6m APOLIPOPROTEIN
N-ACYLTRANSFERASE

(Pseudomonas
aeruginosa) 		PF00795
(CN_hydrolase) 		4 PRO A  50
LEU A  49
HIS A  12
ARG A  57
 None
None
OLC  A 605 (-4.1A)
None
 1.26A 1oafA-5n6mA:
undetectable		 1oafA-5n6mA:
20.34