SIMILAR PATTERNS OF AMINO ACIDS FOR 1NYR_B_THRB2004

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1evl THREONYL-TRNA
SYNTHETASE

(Escherichia
coli) 		PF00587
(tRNA-synt_2b)
PF03129
(HGTP_anticodon) 		8 MET A 332
CYH A 334
ARG A 363
ASP A 383
HIS A 385
TYR A 462
GLN A 484
HIS A 511
 TSB  A2002 (-3.4A)
ZN  A   1 ( 2.4A)
TSB  A2002 (-2.7A)
TSB  A2002 (-2.8A)
ZN  A   1 ( 3.3A)
None
TSB  A2002 (-3.3A)
ZN  A   1 ( 3.2A)
 0.73A 1nyrB-1evlA:
49.3		 1nyrB-1evlA:
41.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1nyq THREONYL-TRNA
SYNTHETASE 1

(Staphylococcus
aureus) 		PF00587
(tRNA-synt_2b)
PF02824
(TGS)
PF03129
(HGTP_anticodon)
PF07973
(tRNA_SAD) 		10 MET A 334
CYH A 336
MET A 363
ARG A 365
LEU A 383
ASP A 385
HIS A 387
TYR A 468
GLN A 490
HIS A 517
 TSB  A1002 (-3.2A)
ZN  A1001 ( 2.1A)
TSB  A1002 ( 4.1A)
TSB  A1002 (-2.5A)
TSB  A1002 (-4.6A)
TSB  A1002 (-3.1A)
ZN  A1001 ( 3.3A)
None
TSB  A1002 (-3.6A)
ZN  A1001 ( 3.0A)
 0.60A 1nyrB-1nyqA:
53.8		 1nyrB-1nyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1qf6 THREONYL-TRNA
SYNTHETASE

(Escherichia
coli) 		PF00587
(tRNA-synt_2b)
PF02824
(TGS)
PF03129
(HGTP_anticodon)
PF07973
(tRNA_SAD) 		7 CYH A 334
ARG A 363
ASP A 383
HIS A 385
TYR A 462
GLN A 484
HIS A 511
 ZN  A1001 (-2.3A)
AMP  A1002 (-2.7A)
ZN  A1001 ( 4.9A)
ZN  A1001 (-3.3A)
None
A  B  76 ( 3.4A)
ZN  A1001 (-3.4A)
 0.86A 1nyrB-1qf6A:
48.7		 1nyrB-1qf6A:
43.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1qf6 THREONYL-TRNA
SYNTHETASE

(Escherichia
coli) 		PF00587
(tRNA-synt_2b)
PF02824
(TGS)
PF03129
(HGTP_anticodon)
PF07973
(tRNA_SAD) 		7 MET A 332
CYH A 334
ARG A 363
ASP A 383
HIS A 385
GLN A 484
HIS A 511
 None
ZN  A1001 (-2.3A)
AMP  A1002 (-2.7A)
ZN  A1001 ( 4.9A)
ZN  A1001 (-3.3A)
A  B  76 ( 3.4A)
ZN  A1001 (-3.4A)
 0.85A 1nyrB-1qf6A:
48.7		 1nyrB-1qf6A:
43.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a31 PROBABLE
THREONYL-TRNA
SYNTHETASE 1

(Aeropyrum
pernix) 		PF00587
(tRNA-synt_2b)
PF03129
(HGTP_anticodon) 		6 MET A 110
CYH A 112
ARG A 144
ASP A 164
HIS A 166
HIS A 310
 None
ZN  A 743 (-2.4A)
None
ZN  A 743 ( 4.1A)
ZN  A 743 (-3.2A)
ZN  A 743 (-3.0A)
 0.69A 1nyrB-3a31A:
5.6		 1nyrB-3a31A:
24.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eo4 THREONINE--TRNA
LIGASE,
MITOCHONDRIAL

(Saccharomyces
cerevisiae) 		PF00587
(tRNA-synt_2b)
PF03129
(HGTP_anticodon) 		8 MET A 131
CYH A 133
ARG A 162
ASP A 182
HIS A 184
TYR A 270
GLN A 292
HIS A 319
 SSA  A1001 (-3.8A)
ZN  A1003 (-2.9A)
SSA  A1001 (-2.8A)
SSA  A1001 (-2.8A)
ZN  A1003 (-3.6A)
None
SSA  A1001 (-3.3A)
ZN  A1003 ( 3.5A)
 0.78A 1nyrB-4eo4A:
45.5		 1nyrB-4eo4A:
27.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hwt THREONINE--TRNA
LIGASE, CYTOPLASMIC

(Homo sapiens) 		PF00587
(tRNA-synt_2b)
PF03129
(HGTP_anticodon) 		8 MET A 444
CYH A 446
ARG A 475
ASP A 495
HIS A 497
TYR A 573
GLN A 595
HIS A 623
 1B2  A 802 (-2.6A)
ZN  A 801 ( 2.3A)
1B2  A 802 (-2.5A)
1B2  A 802 (-3.6A)
ZN  A 801 ( 3.3A)
None
1B2  A 802 (-3.3A)
ZN  A 801 ( 3.1A)
 0.71A 1nyrB-4hwtA:
47.9		 1nyrB-4hwtA:
25.42