SIMILAR PATTERNS OF AMINO ACIDS FOR 1NBI_D_SAMD3293_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j2b ARCHAEOSINE
TRNA-GUANINE
TRANSGLYCOSYLASE

(Pyrococcus
horikoshii) 		PF01472
(PUA)
PF01702
(TGT)
PF14809
(TGT_C1)
PF14810
(TGT_C2) 		4 ILE A 131
ARG A 152
ASP A  95
ASN A  41
 None
None
G  D 915 ( 3.3A)
U  D 916 ( 4.7A)
 1.45A 1nbiD-1j2bA:
0.3		 1nbiD-1j2bA:
17.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ix8 ELONGATION FACTOR 3A

(Saccharomyces
cerevisiae) 		PF00005
(ABC_tran) 		4 ILE A1372
ARG A1375
ASP A1278
ASN A1321
 None
 1.26A 1nbiD-2ix8A:
2.1		 1nbiD-2ix8A:
14.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q1o GERANYLTRANSTRANSFER
ASE (ISPA)

(Helicobacter
pylori) 		PF00348
(polyprenyl_synt) 		4 ILE A 191
ARG A  50
ASP A 229
ASN A 255
 None
DMA  A 500 (-3.1A)
None
None
 1.45A 1nbiD-3q1oA:
0.0		 1nbiD-3q1oA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ro2 G-PROTEIN-SIGNALING
MODULATOR 2
PEPTIDE OF NUCLEAR
MITOTIC APPARATUS
PROTEIN 1

(Mus musculus;
Homo sapiens) 		PF13176
(TPR_7)
PF13424
(TPR_12)
no annotation 		4 ILE A 224
ARG A 221
ASP B2005
ASN B2008
 None
 1.24A 1nbiD-3ro2A:
undetectable		 1nbiD-3ro2A:
23.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wvo CRISPR-ASSOCIATED
PROTEIN, CSE1 FAMILY

(Thermobifida
fusca) 		PF09481
(CRISPR_Cse1) 		4 ILE A 420
ARG A 417
ASP A 360
ASN A 224
 None
 1.32A 1nbiD-3wvoA:
undetectable		 1nbiD-3wvoA:
19.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fnv HEPARINASE III
PROTEIN, HEPARITIN
SULFATE LYASE

(Bacteroides
thetaiotaomicron) 		PF07940
(Hepar_II_III)
PF16889
(Hepar_II_III_N) 		4 ILE A 627
ARG A 638
ASP A 468
ASN A 449
 None
 1.49A 1nbiD-4fnvA:
undetectable		 1nbiD-4fnvA:
16.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4v1u LYND

(Lyngbya
aestuarii) 		PF02624
(YcaO) 		4 ILE A 372
ARG A 384
ASP A 649
ASN A 611
 None
 1.16A 1nbiD-4v1uA:
undetectable		 1nbiD-4v1uA:
17.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bq9 UNCHARACTERIZED
PROTEIN

(Legionella
pneumophila) 		PF12252
(SidE) 		4 ILE A 547
ARG A 373
ASP A 351
ASN A 347
 None
 1.23A 1nbiD-5bq9A:
undetectable		 1nbiD-5bq9A:
17.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bu1 LPG1496

(Legionella
pneumophila) 		PF12252
(SidE) 		4 ILE A 547
ARG A 373
ASP A 351
ASN A 347
 None
 1.29A 1nbiD-5bu1A:
undetectable		 1nbiD-5bu1A:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bu2 LPG1496

(Legionella
pneumophila) 		PF12252
(SidE) 		4 ILE A 547
ARG A 373
ASP A 351
ASN A 347
 None
 1.44A 1nbiD-5bu2A:
undetectable		 1nbiD-5bu2A:
21.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ja1 ENTEROBACTIN
SYNTHASE COMPONENT F
ENTEROBACTIN
BIOSYNTHESIS PROTEIN
YBDZ

(Escherichia
coli;
Escherichia
coli) 		PF00501
(AMP-binding)
PF00550
(PP-binding)
PF00668
(Condensation)
PF00975
(Thioesterase)
PF13193
(AMP-binding_C)
PF03621
(MbtH) 		4 ILE A 862
ARG A 903
ASP A 857
ASN B   5
 None
CL  A1302 (-3.7A)
None
None
 1.23A 1nbiD-5ja1A:
2.2		 1nbiD-5ja1A:
12.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t13 CYANURIC ACID
AMIDOHYDROLASE

(Enterobacter
cloacae) 		PF09663
(Amido_AtzD_TrzD) 		4 ILE A 340
ARG A 273
ASP A 265
ASN A 312
 None
 1.41A 1nbiD-5t13A:
undetectable		 1nbiD-5t13A:
22.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u4h UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE

(Acinetobacter
baumannii) 		PF00275
(EPSP_synthase) 		4 ILE A 118
ARG A 332
ASP A  49
ASN A  51
 0V5  A 509 (-4.5A)
FMT  A 507 (-3.5A)
None
None
 1.33A 1nbiD-5u4hA:
undetectable		 1nbiD-5u4hA:
21.75