SIMILAR PATTERNS OF AMINO ACIDS FOR 1NBH_B_ACTB1294

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bf2 ISOAMYLASE

(Pseudomonas
amyloderamosa) 		PF00128
(Alpha-amylase)
PF02922
(CBM_48) 		4 TRP A 608
TYR A 606
TYR A 213
TYR A 182
 None
 1.40A 1nbhB-1bf2A:
1.4		 1nbhB-1bf2A:
17.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1c4k PROTEIN (ORNITHINE
DECARBOXYLASE)

(Lactobacillus
sp. 30A) 		PF01276
(OKR_DC_1)
PF03709
(OKR_DC_1_N)
PF03711
(OKR_DC_1_C) 		4 TYR A 489
ASN A 221
TYR A 297
TYR A 484
 None
 1.31A 1nbhB-1c4kA:
1.3		 1nbhB-1c4kA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1h17 FORMATE
ACETYLTRANSFERASE 1

(Escherichia
coli) 		PF01228
(Gly_radical)
PF02901
(PFL-like) 		4 TRP A  11
TYR A 187
ASN A  21
TYR A 191
 None
 1.35A 1nbhB-1h17A:
undetectable		 1nbhB-1h17A:
18.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jnf SEROTRANSFERRIN

(Oryctolagus
cuniculus) 		PF00405
(Transferrin) 		4 TYR A  85
ASN A 292
TYR A  95
TYR A 188
 None
CL  A 800 ( 4.6A)
FE  A 702 ( 4.2A)
CO3  A 700 (-4.0A)
 1.44A 1nbhB-1jnfA:
0.4		 1nbhB-1jnfA:
19.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mt6 SET9

(Homo sapiens) 		PF00856
(SET)
PF02493
(MORN) 		4 TYR A 305
ASN A 265
TYR A 245
TYR A 335
 None
SAH  A   1 (-3.6A)
None
SAH  A   1 (-4.4A)
 1.38A 1nbhB-1mt6A:
undetectable		 1nbhB-1mt6A:
23.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ofe FERREDOXIN-DEPENDENT
GLUTAMATE SYNTHASE 2

(Synechocystis
sp. PCC 6803) 		PF00310
(GATase_2)
PF01493
(GXGXG)
PF01645
(Glu_synthase)
PF04898
(Glu_syn_central) 		4 TRP A 418
TYR A 415
TYR A 413
TYR A 319
 None
 1.33A 1nbhB-1ofeA:
0.7		 1nbhB-1ofeA:
11.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pl8 HUMAN SORBITOL
DEHYDROGENASE

(Homo sapiens) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 TRP A 303
TYR A 140
ASN A 301
TYR A 110
 None
 1.48A 1nbhB-1pl8A:
0.0		 1nbhB-1pl8A:
20.16
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1r8y GLYCINE
N-METHYLTRANSFERASE

(Mus musculus) 		PF13847
(Methyltransf_31) 		4 ASN A 138
ARG A 175
TYR A 220
TYR A 242
 None
BME  A1282 (-4.3A)
None
None
 0.94A 1nbhB-1r8yA:
35.1		 1nbhB-1r8yA:
95.55
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1r8y GLYCINE
N-METHYLTRANSFERASE

(Mus musculus) 		PF13847
(Methyltransf_31) 		4 TYR A  33
ASN A 138
TYR A 220
TYR A 242
 None
 1.06A 1nbhB-1r8yA:
35.1		 1nbhB-1r8yA:
95.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1rpw TRANSCRIPTIONAL
REGULATOR QACR

(Staphylococcus
aureus) 		PF00440
(TetR_N)
PF08360
(TetR_C_5) 		4 TYR A 127
ASN A 157
TYR A  82
TYR A  93
 None
 1.06A 1nbhB-1rpwA:
undetectable		 1nbhB-1rpwA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tfd TRANSFERRIN

(Oryctolagus
cuniculus) 		PF00405
(Transferrin) 		4 TYR A  85
ASN A 292
TYR A  95
TYR A 188
 None
None
FE  A 950 ( 4.3A)
CO3  A 900 ( 3.6A)
 1.40A 1nbhB-1tfdA:
undetectable		 1nbhB-1tfdA:
21.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ccm CALEXCITIN

(Doryteuthis
pealeii) 		no annotation 4 TRP A 169
TYR A 110
ASN A 118
TYR A 135
 None
 1.31A 1nbhB-2ccmA:
undetectable		 1nbhB-2ccmA:
21.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eid GALACTOSE OXIDASE

(Fusarium
graminearum) 		PF00754
(F5_F8_type_C)
PF01344
(Kelch_1)
PF09118
(DUF1929) 		4 ASN A 333
ARG A 330
TYR A 495
TYR A 272
 None
None
CU  A 640 (-4.4A)
CU  A 640 (-4.1A)
 1.23A 1nbhB-2eidA:
1.9		 1nbhB-2eidA:
18.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2erh COLICIN E7 IMMUNITY
PROTEIN
COLICIN E7

(Escherichia
coli;
Escherichia
coli) 		PF01320
(Colicin_Pyocin)
no annotation 		4 TYR A  35
ASN A  26
ARG B 520
TYR A  55
 None
 1.16A 1nbhB-2erhA:
undetectable		 1nbhB-2erhA:
16.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fe8 REPLICASE
POLYPROTEIN 1AB

(Severe acute
respiratory
syndrome-related
coronavirus) 		PF08715
(Viral_protease) 		4 TYR A  73
ASN A  14
TYR A  72
TYR A  84
 None
 1.27A 1nbhB-2fe8A:
undetectable		 1nbhB-2fe8A:
24.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gm8 TENA HOMOLOG/THI-4
THIAMINASE

(Pyrobaculum
aerophilum) 		PF03070
(TENA_THI-4) 		4 TRP A 205
TYR A 138
TYR A 164
TYR A  85
 None
HMH  A 301 (-3.3A)
None
None
 1.37A 1nbhB-2gm8A:
undetectable		 1nbhB-2gm8A:
23.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wok CLAVULANIC ACID
BIOSYNTHESIS
OLIGOPEPTIDE BINDING
PROTEIN 2

(Streptomyces
clavuligerus) 		PF00496
(SBP_bac_5) 		4 TRP A 510
TYR A 461
ASN A 491
ARG A 471
 None
 1.44A 1nbhB-2wokA:
undetectable		 1nbhB-2wokA:
20.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iu0 PROTEIN-GLUTAMINE
GAMMA-GLUTAMYLTRANSF
ERASE

(Streptomyces
mobaraensis) 		PF09017
(Transglut_prok) 		4 TYR A 348
ASN A 322
TYR A  12
TYR A 337
 None
 1.41A 1nbhB-3iu0A:
undetectable		 1nbhB-3iu0A:
23.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pwv MHC CLASS I ANTIGEN

(Bos taurus) 		PF00129
(MHC_I)
PF07654
(C1-set) 		4 ASN A  62
TYR A   6
TYR A 170
TYR A  58
 None
 1.34A 1nbhB-3pwvA:
1.0		 1nbhB-3pwvA:
23.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qe3 SORBITOL
DEHYDROGENASE

(Ovis aries) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 TRP A 302
TYR A 139
ASN A 300
TYR A 109
 None
 1.44A 1nbhB-3qe3A:
7.0		 1nbhB-3qe3A:
21.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v3k CASPASE-9
PUTATIVE
UNCHARACTERIZED
PROTEIN ECS1815

(Homo sapiens;
Escherichia
coli) 		PF00656
(Peptidase_C14)
PF16809
(NleF_casp_inhib) 		4 TRP A 340
TYR A 383
ARG B 155
TYR B 181
 None
 1.18A 1nbhB-3v3kA:
undetectable		 1nbhB-3v3kA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vmn DEXTRANASE

(Streptococcus
mutans) 		PF13199
(Glyco_hydro_66) 		4 TYR A 257
ASN A 432
TYR A 307
TYR A 561
 None
 1.50A 1nbhB-3vmnA:
1.2		 1nbhB-3vmnA:
18.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4buo NEUROTENSIN RECEPTOR
TYPE 1

(Rattus
norvegicus) 		PF00001
(7tm_1) 		4 TYR A 146
ASN A 355
ARG A 327
TYR A 324
 None
 1.44A 1nbhB-4buoA:
undetectable		 1nbhB-4buoA:
23.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ipe TNF
RECEPTOR-ASSOCIATED
PROTEIN 1

(Danio rerio) 		PF00183
(HSP90)
PF13589
(HATPase_c_3) 		4 TRP A 314
TYR A 381
ASN A 294
TYR A 332
 None
 1.42A 1nbhB-4ipeA:
undetectable		 1nbhB-4ipeA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tvc DEXTRANSUCRASE

(Leuconostoc
mesenteroides) 		PF02324
(Glyco_hydro_70) 		4 TYR A2391
ASN A2615
TYR A2401
TYR A2395
 None
 1.29A 1nbhB-4tvcA:
undetectable		 1nbhB-4tvcA:
14.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4x9e DEOXYGUANOSINETRIPHO
SPHATE
TRIPHOSPHOHYDROLASE

(Escherichia
coli) 		PF01966
(HD) 		4 TRP A 472
TYR A 475
ARG A 191
TYR A 476
 None
 1.44A 1nbhB-4x9eA:
undetectable		 1nbhB-4x9eA:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xfj ARGININOSUCCINATE
SYNTHASE

(Mycolicibacterium
thermoresistibile) 		PF00764
(Arginosuc_synth) 		4 TYR A 272
ASN A 123
TYR A  87
TYR A 312
 None
ARG  A 503 (-3.9A)
None
ARG  A 503 ( 4.5A)
 1.38A 1nbhB-4xfjA:
undetectable		 1nbhB-4xfjA:
22.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ydo UNCHARACTERIZED
PROTEIN

(Candida
albicans) 		PF00432
(Prenyltrans) 		4 TRP B 196
TYR B 259
ASN B 498
TYR B 499
 None
 1.24A 1nbhB-4ydoB:
undetectable		 1nbhB-4ydoB:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z5s ALDEHYDE
DECARBONYLASE

(Synechocystis
sp. PCC 6803) 		PF11266
(Ald_deCOase) 		4 TYR A  17
TYR A  12
TYR A  21
TYR A 125
 None
 1.45A 1nbhB-4z5sA:
undetectable		 1nbhB-4z5sA:
20.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5es6 LINEAR GRAMICIDIN
SYNTHASE SUBUNIT A

(Brevibacillus
parabrevis) 		PF00501
(AMP-binding)
PF00551
(Formyl_trans_N) 		4 TYR A 294
ASN A 544
ARG A 545
TYR A 350
 None
 1.45A 1nbhB-5es6A:
2.3		 1nbhB-5es6A:
18.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5es9 LINEAR GRAMICIDIN
SYNTHETASE SUBUNIT A

(Brevibacillus
parabrevis) 		PF00501
(AMP-binding)
PF00550
(PP-binding)
PF00551
(Formyl_trans_N)
PF13193
(AMP-binding_C) 		4 TYR A 294
ASN A 544
ARG A 545
TYR A 350
 None
 1.43A 1nbhB-5es9A:
undetectable		 1nbhB-5es9A:
17.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k52 ALDEHYDE
DECARBONYLASE

(Limnothrix sp.
KNUA012) 		PF11266
(Ald_deCOase) 		4 TYR A  17
TYR A  12
TYR A  21
TYR A 125
 None
None
OCD  A 500 (-4.6A)
OCD  A 500 (-3.8A)
 1.46A 1nbhB-5k52A:
undetectable		 1nbhB-5k52A:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l46 DIMETHYLGLYCINE
DEHYDROGENASE,
MITOCHONDRIAL

(Homo sapiens) 		PF01266
(DAO)
PF01571
(GCV_T)
PF08669
(GCV_T_C)
PF16350
(FAO_M) 		4 ASN A 453
ARG A 292
TYR A 399
TYR A 312
 None
 1.36A 1nbhB-5l46A:
0.9		 1nbhB-5l46A:
16.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tth C-TERMINAL
SPYCATCHER FUSION OF
WILDTYPE ZEBRAFISH
TNF
RECEPTOR-ASSOCIATED
PROTEIN 1

(Streptococcus
pyogenes;
Danio rerio) 		PF00183
(HSP90)
PF13589
(HATPase_c_3) 		4 TRP A 314
TYR A 381
ASN A 294
TYR A 332
 None
 1.41A 1nbhB-5tthA:
0.9		 1nbhB-5tthA:
17.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6avf HLA CLASS I
HISTOCOMPATIBILITY
ANTIGEN, B-7 ALPHA
CHAIN

(Homo sapiens) 		no annotation 4 ASN H  63
TYR H   7
TYR H 171
TYR H  59
 None
 1.41A 1nbhB-6avfH:
undetectable		 1nbhB-6avfH:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6d14 TNF
RECEPTOR-ASSOCIATED
PROTEIN 1

(Danio rerio) 		no annotation 4 TRP A 314
TYR A 381
ASN A 294
TYR A 332
 None
 1.43A 1nbhB-6d14A:
undetectable		 1nbhB-6d14A:
undetectable