SIMILAR PATTERNS OF AMINO ACIDS FOR 1NBH_A_ACTA294

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1c4k PROTEIN (ORNITHINE
DECARBOXYLASE)

(Lactobacillus
sp. 30A) 		PF01276
(OKR_DC_1)
PF03709
(OKR_DC_1_N)
PF03711
(OKR_DC_1_C) 		4 TYR A 489
ASN A 221
TYR A 297
TYR A 484
 None
 1.30A 1nbhA-1c4kA:
1.4		 1nbhA-1c4kA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jnf SEROTRANSFERRIN

(Oryctolagus
cuniculus) 		PF00405
(Transferrin) 		4 TYR A  85
ASN A 292
TYR A  95
TYR A 188
 None
CL  A 800 ( 4.6A)
FE  A 702 ( 4.2A)
CO3  A 700 (-4.0A)
 1.45A 1nbhA-1jnfA:
0.5		 1nbhA-1jnfA:
19.52
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1r8y GLYCINE
N-METHYLTRANSFERASE

(Mus musculus) 		PF13847
(Methyltransf_31) 		4 ASN A 138
ARG A 175
TYR A 220
TYR A 242
 None
BME  A1282 (-4.3A)
None
None
 0.94A 1nbhA-1r8yA:
35.1		 1nbhA-1r8yA:
95.55
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1r8y GLYCINE
N-METHYLTRANSFERASE

(Mus musculus) 		PF13847
(Methyltransf_31) 		4 TYR A  33
ASN A 138
TYR A 220
TYR A 242
 None
 1.07A 1nbhA-1r8yA:
35.1		 1nbhA-1r8yA:
95.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1rpw TRANSCRIPTIONAL
REGULATOR QACR

(Staphylococcus
aureus) 		PF00440
(TetR_N)
PF08360
(TetR_C_5) 		4 TYR A 127
ASN A 157
TYR A  82
TYR A  93
 None
 1.05A 1nbhA-1rpwA:
undetectable		 1nbhA-1rpwA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tfd TRANSFERRIN

(Oryctolagus
cuniculus) 		PF00405
(Transferrin) 		4 TYR A  85
ASN A 292
TYR A  95
TYR A 188
 None
None
FE  A 950 ( 4.3A)
CO3  A 900 ( 3.6A)
 1.41A 1nbhA-1tfdA:
0.0		 1nbhA-1tfdA:
21.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eid GALACTOSE OXIDASE

(Fusarium
graminearum) 		PF00754
(F5_F8_type_C)
PF01344
(Kelch_1)
PF09118
(DUF1929) 		4 ASN A 333
ARG A 330
TYR A 495
TYR A 272
 None
None
CU  A 640 (-4.4A)
CU  A 640 (-4.1A)
 1.25A 1nbhA-2eidA:
undetectable		 1nbhA-2eidA:
18.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2erh COLICIN E7 IMMUNITY
PROTEIN
COLICIN E7

(Escherichia
coli;
Escherichia
coli) 		PF01320
(Colicin_Pyocin)
no annotation 		4 TYR A  35
ASN A  26
ARG B 520
TYR A  55
 None
 1.15A 1nbhA-2erhA:
undetectable		 1nbhA-2erhA:
16.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fe8 REPLICASE
POLYPROTEIN 1AB

(Severe acute
respiratory
syndrome-related
coronavirus) 		PF08715
(Viral_protease) 		4 TYR A  73
ASN A  14
TYR A  72
TYR A  84
 None
 1.25A 1nbhA-2fe8A:
0.0		 1nbhA-2fe8A:
24.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iu0 PROTEIN-GLUTAMINE
GAMMA-GLUTAMYLTRANSF
ERASE

(Streptomyces
mobaraensis) 		PF09017
(Transglut_prok) 		4 TYR A 348
ASN A 322
TYR A  12
TYR A 337
 None
 1.42A 1nbhA-3iu0A:
0.0		 1nbhA-3iu0A:
23.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pwv MHC CLASS I ANTIGEN

(Bos taurus) 		PF00129
(MHC_I)
PF07654
(C1-set) 		4 ASN A  62
TYR A   6
TYR A 170
TYR A  58
 None
 1.34A 1nbhA-3pwvA:
0.0		 1nbhA-3pwvA:
23.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4buo NEUROTENSIN RECEPTOR
TYPE 1

(Rattus
norvegicus) 		PF00001
(7tm_1) 		4 TYR A 146
ASN A 355
ARG A 327
TYR A 324
 None
 1.44A 1nbhA-4buoA:
undetectable		 1nbhA-4buoA:
23.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tvc DEXTRANSUCRASE

(Leuconostoc
mesenteroides) 		PF02324
(Glyco_hydro_70) 		4 TYR A2391
ASN A2615
TYR A2401
TYR A2395
 None
 1.30A 1nbhA-4tvcA:
undetectable		 1nbhA-4tvcA:
14.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xfj ARGININOSUCCINATE
SYNTHASE

(Mycolicibacterium
thermoresistibile) 		PF00764
(Arginosuc_synth) 		4 TYR A 272
ASN A 123
TYR A  87
TYR A 312
 None
ARG  A 503 (-3.9A)
None
ARG  A 503 ( 4.5A)
 1.38A 1nbhA-4xfjA:
undetectable		 1nbhA-4xfjA:
22.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z5s ALDEHYDE
DECARBONYLASE

(Synechocystis
sp. PCC 6803) 		PF11266
(Ald_deCOase) 		4 TYR A  17
TYR A  12
TYR A  21
TYR A 125
 None
 1.47A 1nbhA-4z5sA:
undetectable		 1nbhA-4z5sA:
20.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5es6 LINEAR GRAMICIDIN
SYNTHASE SUBUNIT A

(Brevibacillus
parabrevis) 		PF00501
(AMP-binding)
PF00551
(Formyl_trans_N) 		4 TYR A 294
ASN A 544
ARG A 545
TYR A 350
 None
 1.44A 1nbhA-5es6A:
2.2		 1nbhA-5es6A:
18.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5es9 LINEAR GRAMICIDIN
SYNTHETASE SUBUNIT A

(Brevibacillus
parabrevis) 		PF00501
(AMP-binding)
PF00550
(PP-binding)
PF00551
(Formyl_trans_N)
PF13193
(AMP-binding_C) 		4 TYR A 294
ASN A 544
ARG A 545
TYR A 350
 None
 1.43A 1nbhA-5es9A:
1.9		 1nbhA-5es9A:
17.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k52 ALDEHYDE
DECARBONYLASE

(Limnothrix sp.
KNUA012) 		PF11266
(Ald_deCOase) 		4 TYR A  17
TYR A  12
TYR A  21
TYR A 125
 None
None
OCD  A 500 (-4.6A)
OCD  A 500 (-3.8A)
 1.48A 1nbhA-5k52A:
undetectable		 1nbhA-5k52A:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6avf HLA CLASS I
HISTOCOMPATIBILITY
ANTIGEN, B-7 ALPHA
CHAIN

(Homo sapiens) 		no annotation 4 ASN H  63
TYR H   7
TYR H 171
TYR H  59
 None
 1.42A 1nbhA-6avfH:
0.5		 1nbhA-6avfH:
undetectable