SIMILAR PATTERNS OF AMINO ACIDS FOR 1LII_A_ADNA699_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j6u UDP-N-ACETYLMURAMATE
-ALANINE LIGASE MURC

(Thermotoga
maritima) 		PF01225
(Mur_ligase)
PF02875
(Mur_ligase_C)
PF08245
(Mur_ligase_M) 		4 SER A 279
LEU A 284
TYR A 231
GLY A 281
 None
 1.40A 1liiA-1j6uA:
4.7		 1liiA-1j6uA:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nw1 CHOLINE KINASE (49.2
KD)

(Caenorhabditis
elegans) 		PF01633
(Choline_kinase) 		4 SER A  86
LEU A  89
TYR A 113
GLY A  84
 None
 1.35A 1liiA-1nw1A:
undetectable		 1liiA-1nw1A:
21.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1q5d P450 EPOXIDASE

(Sorangium
cellulosum) 		PF00067
(p450) 		4 SER A  59
LEU A 334
TYR A  55
GLY A 359
 None
None
None
HEM  A 440 ( 4.1A)
 1.12A 1liiA-1q5dA:
undetectable		 1liiA-1q5dA:
23.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qb4 PHOSPHOENOLPYRUVATE
CARBOXYLASE

(Escherichia
coli) 		PF00311
(PEPcase) 		4 SER A 632
LEU A 129
TYR A 220
GLY A 636
 None
 1.26A 1liiA-1qb4A:
undetectable		 1liiA-1qb4A:
18.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qb4 PHOSPHOENOLPYRUVATE
CARBOXYLASE

(Escherichia
coli) 		PF00311
(PEPcase) 		4 SER A 632
LEU A 131
TYR A 220
GLY A 636
 None
 1.07A 1liiA-1qb4A:
undetectable		 1liiA-1qb4A:
18.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1t3i PROBABLE CYSTEINE
DESULFURASE

(Synechocystis
sp.) 		PF00266
(Aminotran_5) 		4 SER A  38
LEU A 298
TYR A 391
GLY A 229
 None
 1.31A 1liiA-1t3iA:
undetectable		 1liiA-1t3iA:
22.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1u60 PROBABLE GLUTAMINASE
YBAS

(Escherichia
coli) 		PF04960
(Glutaminase) 		4 SER A 260
LEU A 115
TYR A 244
GLY A 258
 None
 1.31A 1liiA-1u60A:
undetectable		 1liiA-1u60A:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wm6 PHENYLACETIC ACID
DEGRADATION PROTEIN
PAAI

(Thermus
thermophilus) 		PF03061
(4HBT) 		4 SER A  55
LEU A  89
TYR A  96
GLY A  59
 None
 1.19A 1liiA-1wm6A:
undetectable		 1liiA-1wm6A:
17.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1woy METHIONYL-TRNA
SYNTHETASE

(Thermus
thermophilus) 		PF00133
(tRNA-synt_1)
PF09334
(tRNA-synt_1g) 		4 SER A 337
LEU A  20
TYR A 323
GLY A 292
 None
 1.41A 1liiA-1woyA:
1.9		 1liiA-1woyA:
24.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yx2 AMINOMETHYLTRANSFERA
SE

(Bacillus
subtilis) 		PF01571
(GCV_T)
PF08669
(GCV_T_C) 		4 SER A 185
LEU A  99
TYR A 198
GLY A 188
 None
 1.45A 1liiA-1yx2A:
undetectable		 1liiA-1yx2A:
25.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fvm DIHYDROPYRIMIDINASE

(Lachancea
kluyveri) 		PF01979
(Amidohydro_1) 		4 SER A 331
LEU A  72
TYR A 172
GLY A 393
 URP  A 604 (-4.4A)
URP  A 604 ( 4.9A)
None
URP  A 604 (-3.4A)
 1.38A 1liiA-2fvmA:
2.6		 1liiA-2fvmA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2is7 ALDOSE REDUCTASE

(Homo sapiens) 		PF00248
(Aldo_ket_red) 		4 SER A 201
LEU A 170
TYR A 198
GLY A 203
 None
 1.43A 1liiA-2is7A:
1.8		 1liiA-2is7A:
20.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2kkn UNCHARACTERIZED
PROTEIN

(Thermotoga
maritima) 		PF12850
(Metallophos_2) 		4 SER A   8
LEU A  19
TYR A 140
GLY A  37
 None
 1.42A 1liiA-2kknA:
undetectable		 1liiA-2kknA:
20.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pka KALLIKREIN A

(Sus scrofa) 		PF00089
(Trypsin) 		4 SER B 226
LEU B 160
TYR B 228
GLY B 221
 BEN  B   1 (-2.7A)
None
None
None
 1.11A 1liiA-2pkaB:
undetectable		 1liiA-2pkaB:
19.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2r9g AAA ATPASE, CENTRAL
REGION

(Enterococcus
faecium) 		PF12002
(MgsA_C) 		4 SER A 332
LEU A 411
TYR A 399
GLY A 290
 None
 1.37A 1liiA-2r9gA:
undetectable		 1liiA-2r9gA:
21.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y27 PHENYLACETATE-COENZY
ME A LIGASE

(Burkholderia
cenocepacia) 		PF00501
(AMP-binding)
PF14535
(AMP-binding_C_2) 		4 SER A  37
LEU A 296
TYR A  40
GLY A  78
 None
 1.50A 1liiA-2y27A:
undetectable		 1liiA-2y27A:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y93 CIS-2,3-DIHYDROBIPHE
NYL-2,3-DIOL
DEHYDROGENASE

(Comamonas
testosteroni) 		PF00106
(adh_short) 		4 SER A 142
LEU A 191
TYR A 155
GLY A 185
 None
 1.33A 1liiA-2y93A:
7.3		 1liiA-2y93A:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ybr SINGLE CHAIN
ANTIBODY FRAGMENT
9004G

(Homo sapiens) 		PF07686
(V-set) 		4 SER A 103
LEU A  37
TYR B 168
GLY A  99
 None
 1.26A 1liiA-2ybrA:
undetectable		 1liiA-2ybrA:
19.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3abz BETA-GLUCOSIDASE I

(Kluyveromyces
marxianus) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF07691
(PA14)
PF14310
(Fn3-like) 		4 SER A  61
LEU A 313
TYR A 362
GLY A  49
 None
 1.29A 1liiA-3abzA:
4.0		 1liiA-3abzA:
19.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3au0 CLUMPING FACTOR B

(Staphylococcus
aureus) 		PF10425
(SdrG_C_C) 		4 SER A 425
LEU A 431
TYR A 468
GLY A 491
 None
 1.35A 1liiA-3au0A:
undetectable		 1liiA-3au0A:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f7m ALKALINE SERINE
PROTEASE VER112

(Lecanicillium
psalliotae) 		PF00082
(Peptidase_S8) 		4 SER A 118
LEU A 337
TYR A 127
GLY A 380
 None
 1.24A 1liiA-3f7mA:
1.5		 1liiA-3f7mA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f7o SERINE PROTEASE

(Purpureocillium
lilacinum) 		PF00082
(Peptidase_S8) 		4 SER A  16
LEU A 236
TYR A  25
GLY A 280
 None
 1.16A 1liiA-3f7oA:
undetectable		 1liiA-3f7oA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3let ADENOSINE
MONOPHOSPHATE-PROTEI
N TRANSFERASE VOPS

(Vibrio
parahaemolyticus) 		PF02661
(Fic) 		4 SER A 311
LEU A 167
TYR A 298
GLY A 314
 None
 1.50A 1liiA-3letA:
undetectable		 1liiA-3letA:
23.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3poy NEUREXIN-1-ALPHA

(Bos taurus) 		PF00008
(EGF)
PF02210
(Laminin_G_2) 		4 SER A 543
LEU A 648
TYR A 637
GLY A 545
 None
 1.26A 1liiA-3poyA:
undetectable		 1liiA-3poyA:
16.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qgh RNA-DIRECTED RNA
POLYMERASE

(Hepacivirus C) 		PF00998
(RdRP_3) 		4 SER A 371
LEU A 419
TYR A 383
GLY A 480
 None
 1.45A 1liiA-3qghA:
undetectable		 1liiA-3qghA:
21.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4blu RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J

(Escherichia
coli) 		PF04378
(RsmJ) 		4 SER A 100
LEU A 116
TYR A  38
GLY A  44
 None
None
None
EDO  A1284 ( 4.7A)
 1.49A 1liiA-4bluA:
3.8		 1liiA-4bluA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cw4 BETA-KETOACYL
SYNTHASE

(Pseudomonas
aeruginosa) 		PF00109
(ketoacyl-synt)
PF02801
(Ketoacyl-synt_C) 		4 SER A  20
LEU A 589
TYR A 580
GLY A  12
 None
 1.47A 1liiA-4cw4A:
undetectable		 1liiA-4cw4A:
22.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o7d GLUTAMINASE KIDNEY
ISOFORM,
MITOCHONDRIAL

(Homo sapiens) 		PF04960
(Glutaminase) 		4 SER A 482
LEU A 505
TYR A 466
GLY A 487
 None
None
ONL  A 601 (-4.8A)
None
 1.41A 1liiA-4o7dA:
undetectable		 1liiA-4o7dA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oou BETA-1,4-MANNANASE

(Cryptopygus
antarcticus) 		no annotation 4 SER B 242
LEU B 179
TYR B 258
GLY B 184
 None
 1.43A 1liiA-4oouB:
1.7		 1liiA-4oouB:
22.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pcs ALPHA-L-FUCOSIDASE

(Bacteroides
thetaiotaomicron) 		PF01120
(Alpha_L_fucos) 		4 SER A 342
LEU A 291
TYR A 396
GLY A 345
 None
 1.44A 1liiA-4pcsA:
2.1		 1liiA-4pcsA:
19.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rqu ALCOHOL
DEHYDROGENASE

(Arabidopsis
thaliana) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 SER A 180
LEU A 187
TYR A 325
GLY A 209
 None
 1.42A 1liiA-4rquA:
3.5		 1liiA-4rquA:
23.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w8b EXO-XYLOGLUCANASE

(uncultured
bacterium) 		PF00150
(Cellulase) 		4 SER A 247
LEU A 308
TYR A 253
GLY A 245
 None
 1.42A 1liiA-4w8bA:
1.5		 1liiA-4w8bA:
23.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4woj ASPARTATE
SEMIALDEHYDE
DEHYDROGENASE

(Francisella
tularensis) 		PF01118
(Semialdhyde_dh)
PF02774
(Semialdhyde_dhC) 		4 SER A  71
LEU A  63
TYR A  77
GLY A   5
 None
 1.31A 1liiA-4wojA:
3.6		 1liiA-4wojA:
21.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ywr PUTATIVE
HYDROXYMETHYLPYRIMID
INE
KINASE/PHOSPHOMETHYL
PYRIMIDINE KINASE

(Acinetobacter
baumannii) 		PF08543
(Phos_pyr_kin) 		4 SER A 190
LEU A 150
TYR A 192
GLY A 178
 None
 1.37A 1liiA-4ywrA:
15.5		 1liiA-4ywrA:
21.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zlg PUTATIVE B-GLYCAN
PHOSPHORYLASE

(Saccharophagus
degradans) 		PF06165
(Glyco_transf_36)
PF17167
(Glyco_hydro_36) 		4 SER A 634
LEU A 580
TYR A 631
GLY A 639
 None
 1.41A 1liiA-4zlgA:
undetectable		 1liiA-4zlgA:
17.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d7w SERRALYSIN

(Serratia
marcescens) 		PF00353
(HemolysinCabind)
PF00413
(Peptidase_M10)
PF08548
(Peptidase_M10_C) 		4 SER A 379
LEU A  13
TYR A   6
GLY A 361
 SER  A 379 ( 0.0A)
LEU  A  13 ( 0.6A)
TYR  A   6 ( 1.3A)
GLY  A 361 (-0.0A)
 1.48A 1liiA-5d7wA:
undetectable		 1liiA-5d7wA:
21.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y6t ENDO-1,4-BETA-MANNAN
ASE

(Eisenia fetida) 		no annotation 4 SER A 240
LEU A 216
TYR A 256
GLY A 182
 None
 1.13A 1liiA-5y6tA:
1.7		 1liiA-5y6tA:
12.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6b9r HYDROXYETHYLPHOSPHON
ATE DIOXYGENASE

(Streptomyces
albus) 		no annotation 4 SER A 395
LEU A 204
TYR A 366
GLY A 393
 None
 1.48A 1liiA-6b9rA:
undetectable		 1liiA-6b9rA:
15.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fik POLYKETIDE SYNTHASE

(Cercospora
nicotianae) 		no annotation 4 SER A1145
LEU A1017
TYR A1162
GLY A1008
 None
 1.38A 1liiA-6fikA:
undetectable		 1liiA-6fikA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6g72 NADH DEHYDROGENASE
[UBIQUINONE]
IRON-SULFUR PROTEIN
7, MITOCHONDRIAL
NADH DEHYDROGENASE
[UBIQUINONE]
IRON-SULFUR PROTEIN
8, MITOCHONDRIAL

(Mus musculus) 		no annotation 4 SER B 128
LEU I 149
TYR I 120
GLY B 132
 SF4  B 201 (-2.8A)
None
None
None
 1.33A 1liiA-6g72B:
undetectable		 1liiA-6g72B:
13.50