SIMILAR PATTERNS OF AMINO ACIDS FOR 1L7X_A_CFFA864

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jmz AMINE DEHYDROGENASE

(Pseudomonas
putida) 		PF08992
(QH-AmDH_gamma)
PF09098
(Dehyd-heme_bind)
PF09099
(Qn_am_d_aIII)
PF09100
(Qn_am_d_aIV)
PF14930
(Qn_am_d_aII) 		3 TRP A 130
HIS A 104
LYS G  44
 HEC  A1001 (-4.1A)
HEC  A1001 (-3.2A)
TRQ  G  43 (-3.0A)
 1.26A 1l7xA-1jmzA:
0.0		 1l7xA-1jmzA:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nq7 NUCLEAR RECEPTOR
ROR-BETA

(Rattus
norvegicus) 		PF00104
(Hormone_recep) 		3 TRP A 259
HIS A 423
LYS A 426
 None
ARL  A 800 ( 4.3A)
None
 1.40A 1l7xA-1nq7A:
1.2		 1l7xA-1nq7A:
15.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1x6g MEGAKARYOCYTE-ASSOCI
ATED
TYROSINE-PROTEIN
KINASE

(Homo sapiens) 		PF00018
(SH3_1) 		3 TRP A  53
HIS A  26
LYS A  30
 None
 1.45A 1l7xA-1x6gA:
undetectable		 1l7xA-1x6gA:
7.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xc6 BETA-GALACTOSIDASE

(Penicillium sp.) 		PF01301
(Glyco_hydro_35)
PF10435
(BetaGal_dom2)
PF13363
(BetaGal_dom3)
PF13364
(BetaGal_dom4_5) 		3 TRP A 698
HIS A 736
LYS A 838
 None
IOD  A9038 ( 4.5A)
None
 1.35A 1l7xA-1xc6A:
1.7		 1l7xA-1xc6A:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xnj BIFUNCTIONAL
3'-PHOSPHOADENOSINE
5'-PHOSPHOSULFATE
SYNTHETASE 1

(Homo sapiens) 		no annotation 3 TRP B 457
HIS B 363
LYS B 367
 None
 1.30A 1l7xA-1xnjB:
2.7		 1l7xA-1xnjB:
22.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2f9g MITOGEN-ACTIVATED
PROTEIN KINASE FUS3

(Saccharomyces
cerevisiae) 		PF00069
(Pkinase) 		3 TRP A 187
HIS A 101
LYS A 139
 None
 1.48A 1l7xA-2f9gA:
0.0		 1l7xA-2f9gA:
17.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2gj4 GLYCOGEN
PHOSPHORYLASE,
MUSCLE FORM

(Oryctolagus
cuniculus) 		PF00343
(Phosphorylase) 		3 TRP A 174
HIS A 614
LYS A 617
 None
 0.22A 1l7xA-2gj4A:
54.5		 1l7xA-2gj4A:
80.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2imz ENDONUCLEASE PI-MTUI

(Mycobacterium
tuberculosis) 		no annotation 3 TRP A  81
HIS A  73
LYS A  74
 None
 1.35A 1l7xA-2imzA:
undetectable		 1l7xA-2imzA:
11.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjf BIFUNCTIONAL
3'-PHOSPHOADENOSINE
5'-PHOSPHOSULFATE
SYNTHETASE 1

(Homo sapiens) 		PF01747
(ATP-sulfurylase)
PF14306
(PUA_2) 		3 TRP A 457
HIS A 363
LYS A 367
 None
 1.08A 1l7xA-2qjfA:
0.0		 1l7xA-2qjfA:
20.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3cem GLYCOGEN
PHOSPHORYLASE, LIVER
FORM

(Homo sapiens) 		PF00343
(Phosphorylase) 		3 TRP A 174
HIS A 614
LYS A 617
 None
 0.25A 1l7xA-3cemA:
58.8		 1l7xA-3cemA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3sfz APOPTOTIC PEPTIDASE
ACTIVATING FACTOR 1

(Mus musculus) 		PF00400
(WD40)
PF00931
(NB-ARC)
PF12894
(ANAPC4_WD40) 		3 TRP A 806
HIS A 827
LYS A 812
 None
 1.40A 1l7xA-3sfzA:
undetectable		 1l7xA-3sfzA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b99 MITOGEN-ACTIVATED
PROTEIN KINASE 7

(Homo sapiens) 		PF00069
(Pkinase) 		3 TRP A 226
HIS A 145
LYS A 184
 None
 1.33A 1l7xA-4b99A:
1.0		 1l7xA-4b99A:
18.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f4o HAPTOGLOBIN

(Sus scrofa) 		PF00089
(Trypsin) 		3 TRP C 225
HIS C 236
LYS C 238
 None
 1.38A 1l7xA-4f4oC:
undetectable		 1l7xA-4f4oC:
17.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k6c ACETOACETYL-COA
REDUCTASE

(Burkholderia
cenocepacia) 		PF13561
(adh_short_C2) 		3 TRP A 132
HIS A  28
LYS A   3
 None
 1.30A 1l7xA-4k6cA:
3.1		 1l7xA-4k6cA:
14.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o1r REPLICATIVE DNA
HELICASE

(Nostoc
punctiforme) 		PF14890
(Intein_splicing) 		3 TRP A  81
HIS A  73
LYS A  74
 None
 1.40A 1l7xA-4o1rA:
undetectable		 1l7xA-4o1rA:
10.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oz5 BACILLUS SUBTILIS
HMOB

(Bacillus
subtilis) 		PF03992
(ABM) 		3 TRP A 128
HIS A 138
LYS A 135
 None
HEM  A 201 ( 3.2A)
None
 1.40A 1l7xA-4oz5A:
undetectable		 1l7xA-4oz5A:
9.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rws C-X-C CHEMOKINE
RECEPTOR TYPE
4/ENDOLYSIN CHIMERIC
PROTEIN

(Escherichia
virus T4;
Homo sapiens) 		PF00001
(7tm_1)
PF00959
(Phage_lysozyme)
PF12109
(CXCR4_N) 		3 TRP A 102
HIS A 113
LYS A 110
 None
 1.42A 1l7xA-4rwsA:
0.5		 1l7xA-4rwsA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wjg HAPTOGLOBIN

(Homo sapiens) 		no annotation 3 TRP C 280
HIS C 291
LYS C 293
 None
 1.41A 1l7xA-4wjgC:
undetectable		 1l7xA-4wjgC:
15.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zrq CD320 ANTIGEN
TRANSCOBALAMIN-2

(Homo sapiens) 		PF00057
(Ldl_recept_a)
PF01122
(Cobalamin_bind)
PF14478
(DUF4430) 		3 TRP C  72
HIS A  56
LYS A  59
 None
 1.48A 1l7xA-4zrqC:
undetectable		 1l7xA-4zrqC:
8.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zsl MITOGEN-ACTIVATED
PROTEIN KINASE 7

(Homo sapiens) 		PF00069
(Pkinase) 		3 TRP A 226
HIS A 145
LYS A 184
 GOL  A 406 (-3.7A)
None
None
 1.36A 1l7xA-4zslA:
1.0		 1l7xA-4zslA:
16.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5abm RETINAL
DEHYDROGENASE 1

(Ovis aries) 		PF00171
(Aldedh) 		3 TRP A  28
HIS A 203
LYS A  18
 None
 1.37A 1l7xA-5abmA:
undetectable		 1l7xA-5abmA:
21.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ci6 MITOGEN-ACTIVATED
PROTEIN KINASE 6

(Arabidopsis
thaliana) 		PF00069
(Pkinase) 		3 TRP A 228
HIS A 152
LYS A 191
 None
 1.29A 1l7xA-5ci6A:
undetectable		 1l7xA-5ci6A:
18.62
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ikp GLYCOGEN
PHOSPHORYLASE, BRAIN
FORM

(Homo sapiens) 		PF00343
(Phosphorylase) 		3 TRP A 174
HIS A 614
LYS A 617
 None
 0.44A 1l7xA-5ikpA:
52.1		 1l7xA-5ikpA:
81.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ixd TYROSINE-PROTEIN
KINASE JAK1

(Homo sapiens) 		no annotation 3 TRP A 116
HIS A 264
LYS A 267
 None
 1.48A 1l7xA-5ixdA:
undetectable		 1l7xA-5ixdA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5koh NITROGENASE FEMO
BETA SUBUNIT PROTEIN
NIFK

(Gluconacetobacter
diazotrophicus) 		PF00148
(Oxidored_nitro)
PF11844
(DUF3364) 		3 TRP B  49
HIS B 387
LYS B 433
 None
 1.37A 1l7xA-5kohB:
undetectable		 1l7xA-5kohB:
20.21