SIMILAR PATTERNS OF AMINO ACIDS FOR 1K4T_D_TTCD990_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1flc HAEMAGGLUTININ-ESTER
ASE-FUSION
GLYCOPROTEIN

(Influenza C
virus) 		PF02710
(Hema_HEFG)
PF03996
(Hema_esterase)
PF08720
(Hema_stalk) 		4 GLU B  95
LYS A 395
ASP B  73
THR B  81
 None
 1.35A 1k4tA-1flcB:
4.9		 1k4tA-1flcB:
15.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gkp HYDANTOINASE

(Thermus sp.) 		PF01979
(Amidohydro_1) 		4 GLU A  24
ARG A 432
LYS A 450
ASP A 120
 None
 1.47A 1k4tA-1gkpA:
0.0		 1k4tA-1gkpA:
22.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j0a 1-AMINOCYCLOPROPANE-
1-CARBOXYLATE
DEAMINASE

(Pyrococcus
horikoshii) 		PF00291
(PALP) 		4 GLU A  16
ARG A  56
LYS A  41
ASP A  43
 IPA  A1747 ( 4.1A)
None
None
None
 1.48A 1k4tA-1j0aA:
0.0		 1k4tA-1j0aA:
17.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ot5 KEXIN

(Saccharomyces
cerevisiae) 		PF00082
(Peptidase_S8)
PF01483
(P_proprotein) 		4 GLU A 547
ARG A 540
ASP A 320
THR A 328
 None
None
CA  A 600 (-2.8A)
None
 1.22A 1k4tA-1ot5A:
0.0		 1k4tA-1ot5A:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vrq SARCOSINE OXIDASE
ALPHA SUBUNIT

(Corynebacterium
sp. U-96) 		PF01571
(GCV_T)
PF08669
(GCV_T_C)
PF12831
(FAD_oxidored)
PF13510
(Fer2_4) 		4 GLU A 904
ARG A 865
ASP A 862
THR A 836
 None
 1.18A 1k4tA-1vrqA:
1.2		 1k4tA-1vrqA:
18.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z8l GLUTAMATE
CARBOXYPEPTIDASE II

(Homo sapiens) 		PF02225
(PA)
PF04253
(TFR_dimer)
PF04389
(Peptidase_M28) 		4 GLU A 425
ARG A 534
ASP A 465
THR A 538
 ZN  A1752 (-2.5A)
None
None
None
 0.98A 1k4tA-1z8lA:
0.0		 1k4tA-1z8lA:
22.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zsw GLYOXALASE FAMILY
PROTEIN

(Bacillus cereus) 		PF00903
(Glyoxalase) 		4 GLU A 135
ARG A 226
LYS A 228
ASP A 274
 None
 1.32A 1k4tA-1zswA:
0.0		 1k4tA-1zswA:
18.88
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2b9s DNA TOPOISOMERASE
I-LIKE PROTEIN
TOPOISOMERASE I-LIKE
PROTEIN

(Leishmania
donovani) 		PF01028
(Topoisom_I)
PF02919
(Topoisom_I_N)
PF14370
(Topo_C_assoc) 		4 GLU A 182
LYS A 352
ASP A 353
THR B 217
 None
VO4  B 301 ( 3.9A)
None
None
 1.24A 1k4tA-2b9sA:
32.6		 1k4tA-2b9sA:
48.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gah HETEROTETRAMERIC
SARCOSINE OXIDASE
ALPHA-SUBUNIT

(Stenotrophomonas
maltophilia) 		PF01571
(GCV_T)
PF07992
(Pyr_redox_2)
PF08669
(GCV_T_C)
PF13510
(Fer2_4) 		4 GLU A 905
ARG A 866
ASP A 863
THR A 837
 None
 1.16A 1k4tA-2gahA:
undetectable		 1k4tA-2gahA:
18.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nya PERIPLASMIC NITRATE
REDUCTASE

(Escherichia
coli) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF04879
(Molybdop_Fe4S4) 		4 GLU A 572
ARG A 510
LYS A   7
ASP A   6
 None
 1.48A 1k4tA-2nyaA:
undetectable		 1k4tA-2nyaA:
21.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p2m ACETYL-COENZYME A
SYNTHETASE

(Salmonella
enterica) 		PF00501
(AMP-binding)
PF13193
(AMP-binding_C)
PF16177
(ACAS_N) 		4 GLU A 531
ARG A 515
ASP A 500
THR A 418
 None
PRX  A 998 (-4.0A)
PRX  A 998 (-2.7A)
None
 1.19A 1k4tA-2p2mA:
undetectable		 1k4tA-2p2mA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2q7s N-FORMYLGLUTAMATE
AMIDOHYDROLASE

(Cupriavidus
pinatubonensis) 		PF05013
(FGase) 		4 GLU A 258
ARG A  78
LYS A 114
ASP A  82
 None
ZN  A 400 ( 4.3A)
None
None
 1.36A 1k4tA-2q7sA:
0.0		 1k4tA-2q7sA:
20.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2r5v PCZA361.1

(Amycolatopsis
orientalis) 		PF00903
(Glyoxalase)
PF14696
(Glyoxalase_5) 		4 GLU A 297
ARG A 324
ASP A 160
THR A 214
 None
None
None
HHH  A4114 (-3.1A)
 1.43A 1k4tA-2r5vA:
undetectable		 1k4tA-2r5vA:
18.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wd9 ACYL-COENZYME A
SYNTHETASE ACSM2A,
MITOCHONDRIAL

(Homo sapiens) 		PF00501
(AMP-binding)
PF13193
(AMP-binding_C) 		4 GLU A 477
ARG A 461
ASP A 446
THR A 366
 None
 1.14A 1k4tA-2wd9A:
undetectable		 1k4tA-2wd9A:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zy2 L-ASPARTATE
4-CARBOXYLYASE

(Pseudomonas sp.
ATCC 19121) 		PF00155
(Aminotran_1_2) 		4 GLU A 124
ARG A 139
LYS A 365
ASP A 368
 None
 1.46A 1k4tA-2zy2A:
undetectable		 1k4tA-2zy2A:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3axs PROBABLE
N(2),N(2)-DIMETHYLGU
ANOSINE TRNA
METHYLTRANSFERASE
TRM1

(Aquifex
aeolicus) 		PF02005
(TRM) 		4 GLU A 304
ARG A  66
ASP A 132
THR A 159
 None
SFG  A 501 (-4.3A)
SFG  A 501 (-3.7A)
None
 1.39A 1k4tA-3axsA:
0.1		 1k4tA-3axsA:
21.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dzu PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA
RETINOIC ACID
RECEPTOR RXR-ALPHA

(Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4) 		4 GLU A 207
ARG A 202
ASP D 337
THR A 168
 None
 1.49A 1k4tA-3dzuA:
0.3		 1k4tA-3dzuA:
20.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3egw RESPIRATORY NITRATE
REDUCTASE 1 ALPHA
CHAIN

(Escherichia
coli) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF14710
(Nitr_red_alph_N) 		4 GLU A 889
ARG A 603
ASP A 183
THR A 663
 None
 1.46A 1k4tA-3egwA:
0.5		 1k4tA-3egwA:
18.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3etc AMP-BINDING PROTEIN

(Methanosarcina
acetivorans) 		PF00501
(AMP-binding)
PF13193
(AMP-binding_C) 		4 GLU A 466
ARG A 450
ASP A 435
THR A 355
 NO3  A1001 (-4.4A)
None
None
None
 1.27A 1k4tA-3etcA:
undetectable		 1k4tA-3etcA:
21.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fed GLUTAMATE
CARBOXYPEPTIDASE III

(Homo sapiens) 		PF02225
(PA)
PF04253
(TFR_dimer)
PF04389
(Peptidase_M28) 		4 GLU A 415
ARG A 524
ASP A 455
THR A 528
 ZN  A1751 ( 1.9A)
BIX  A   1 ( 3.1A)
None
None
 1.04A 1k4tA-3fedA:
undetectable		 1k4tA-3fedA:
23.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hig AMILORIDE-SENSITIVE
AMINE OXIDASE

(Homo sapiens) 		PF01179
(Cu_amine_oxid)
PF02727
(Cu_amine_oxidN2)
PF02728
(Cu_amine_oxidN3) 		4 GLU A 393
ARG A 453
LYS A 478
ASP A 466
 None
 1.27A 1k4tA-3higA:
undetectable		 1k4tA-3higA:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o82 PEPTIDE ARYLATION
ENZYME

(Acinetobacter
baumannii) 		PF00501
(AMP-binding) 		4 GLU A  14
ARG A  20
ASP A  27
THR A 210
 None
 1.17A 1k4tA-3o82A:
undetectable		 1k4tA-3o82A:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ogr BETA-GALACTOSIDASE

(Trichoderma
reesei) 		PF01301
(Glyco_hydro_35)
PF10435
(BetaGal_dom2)
PF13363
(BetaGal_dom3)
PF13364
(BetaGal_dom4_5) 		4 GLU A 960
ARG A 372
ASP A  80
THR A1003
 None
 1.47A 1k4tA-3ogrA:
undetectable		 1k4tA-3ogrA:
18.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vue GRANULE-BOUND STARCH
SYNTHASE 1,
CHLOROPLASTIC/AMYLOP
LASTIC

(Oryza sativa) 		PF00534
(Glycos_transf_1)
PF08323
(Glyco_transf_5) 		4 GLU A 410
ARG A 271
ASP A 294
THR A 298
 None
SO4  A 701 (-3.4A)
None
None
 1.49A 1k4tA-3vueA:
undetectable		 1k4tA-3vueA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wi5 MAJOR OUTER MEMBRANE
PROTEIN P.IB

(Neisseria
meningitidis) 		PF00267
(Porin_1) 		4 GLU A 123
ARG A 130
LYS A  88
ASP A 132
 None
 1.29A 1k4tA-3wi5A:
undetectable		 1k4tA-3wi5A:
20.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zzu ELONGATION FACTOR G

(Staphylococcus
aureus) 		PF00009
(GTP_EFTU)
PF00679
(EFG_C)
PF03144
(GTP_EFTU_D2)
PF03764
(EFG_IV)
PF14492
(EFG_II) 		4 GLU A 455
ARG A 626
ASP A 622
THR A 662
 None
 1.44A 1k4tA-3zzuA:
undetectable		 1k4tA-3zzuA:
21.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hzh PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		4 GLU A 250
ARG A 418
ASP A 417
THR A 186
 None
 1.31A 1k4tA-4hzhA:
undetectable		 1k4tA-4hzhA:
20.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k6l CYTOLETHAL
DISTENDING TOXIN
SUBUNIT B HOMOLOG
PUTATIVE
PERTUSSIS-LIKE TOXIN
SUBUNIT

(Salmonella
enterica) 		PF02917
(Pertussis_S1)
PF03372
(Exo_endo_phos) 		4 GLU G 188
ARG F 127
LYS F  28
ASP F  60
 None
None
None
GOL  G 301 (-3.5A)
 1.47A 1k4tA-4k6lG:
undetectable		 1k4tA-4k6lG:
16.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nx8 PROTEIN-TYROSINE
PHOSPHATASE 2

(Bdellovibrio
bacteriovorus) 		PF14566
(PTPlike_phytase) 		4 GLU A 130
ARG A 172
ASP A  99
THR A 114
 MG  A 303 ( 3.8A)
None
None
None
 1.45A 1k4tA-4nx8A:
0.6		 1k4tA-4nx8A:
17.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xmv AMINOPEPTIDASE N

(Escherichia
coli) 		PF01433
(Peptidase_M1)
PF11940
(DUF3458)
PF17432
(DUF3458_C) 		4 GLU A 642
ARG A 728
ASP A 729
THR A 764
 None
 1.14A 1k4tA-4xmvA:
undetectable		 1k4tA-4xmvA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zut CLASSICAL MHC CLASS
I ANTIGEN

(Equus caballus) 		PF00129
(MHC_I)
PF07654
(C1-set) 		4 GLU A  69
ARG A  97
ASP A 116
THR A 143
 None
 1.49A 1k4tA-4zutA:
undetectable		 1k4tA-4zutA:
19.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5axh DEXTRANASE

(Thermoanaerobacter
pseudethanolicus) 		PF13199
(Glyco_hydro_66) 		4 GLU A 451
ARG A 317
LYS A 258
ASP A 266
 GLC  A 702 ( 4.5A)
None
None
None
 1.49A 1k4tA-5axhA:
undetectable		 1k4tA-5axhA:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d8w ENDOGLUCANASE

(Ganoderma
lucidum) 		PF00150
(Cellulase) 		4 GLU A 322
ARG A  76
ASP A 118
THR A 203
 None
 1.46A 1k4tA-5d8wA:
undetectable		 1k4tA-5d8wA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n7f MEMBRANE-ASSOCIATED
GUANYLATE KINASE, WW
AND PDZ
DOMAIN-CONTAINING
PROTEIN 1,ANNEXIN A2

(Homo sapiens) 		no annotation 4 GLU A 575
ARG A 554
ASP A 517
THR A 473
 None
 1.13A 1k4tA-5n7fA:
undetectable		 1k4tA-5n7fA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u8z CAROTENOID OXYGENASE
1

(Neurospora
crassa) 		PF03055
(RPE65) 		4 GLU A 122
ARG A 136
ASP A 217
THR A 193
 None
 1.44A 1k4tA-5u8zA:
undetectable		 1k4tA-5u8zA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vho 26S PROTEASOME
NON-ATPASE
REGULATORY SUBUNIT
10
26S PROTEASOME
REGULATORY SUBUNIT
6B

(Homo sapiens) 		PF00004
(AAA)
PF00023
(Ank)
PF12796
(Ank_2) 		4 GLU G 187
ARG D 338
LYS D 369
ASP D 368
 None
 1.34A 1k4tA-5vhoG:
undetectable		 1k4tA-5vhoG:
16.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vop 5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE

(Thermus
thermophilus) 		no annotation 4 GLU A 385
ARG A 374
LYS A 608
ASP A 605
 None
 1.40A 1k4tA-5vopA:
undetectable		 1k4tA-5vopA:
9.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xpg UNCHARACTERIZED
PROTEIN

(Thermus
thermophilus) 		no annotation 4 GLU A 441
ARG A 335
LYS A 329
ASP A 332
 None
 1.37A 1k4tA-5xpgA:
undetectable		 1k4tA-5xpgA:
9.30