SIMILAR PATTERNS OF AMINO ACIDS FOR 1JQD_B_HSMB601_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1jqe HISTAMINE
N-METHYLTRANSFERASE

(Homo sapiens) 		PF13489
(Methyltransf_23) 		10 PHE A  22
GLU A  28
GLN A 143
TYR A 146
VAL A 173
TRP A 179
TRP A 183
PHE A 243
ASN A 283
LEU A 285
 None
None
None
QUN  A 500 (-3.3A)
None
QUN  A 500 (-3.6A)
QUN  A 500 (-4.9A)
QUN  A 500 (-4.1A)
None
None
 0.37A 1jqdB-1jqeA:
42.8		 1jqdB-1jqeA:
99.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h7l ENDOGLUCANASE

(Vibrio
parahaemolyticus) 		PF00759
(Glyco_hydro_9)
PF02927
(CelD_N) 		5 PHE A  62
GLN A  59
TYR A 486
TRP A  57
PHE A 409
 None
 1.11A 1jqdB-3h7lA:
0.0		 1jqdB-3h7lA:
17.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jij ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE

(Mycolicibacterium
thermoresistibile) 		PF00982
(Glyco_transf_20) 		5 PHE A 177
GLN A 148
TYR A 119
TRP A 116
LEU A 190
 None
 1.37A 1jqdB-5jijA:
1.6		 1jqdB-5jijA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6gdt -

(-) 		no annotation 5 PHE A  62
GLN A  59
TYR A 485
TRP A  57
PHE A 409
 None
 1.11A 1jqdB-6gdtA:
0.0		 1jqdB-6gdtA:
undetectable