SIMILAR PATTERNS OF AMINO ACIDS FOR 1GRM_A_DVAA8

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hg4 6-DEOXYERYTHRONOLIDE
B SYNTHASE

(Saccharopolyspora
erythraea) 		PF00109
(ketoacyl-synt)
PF00698
(Acyl_transf_1)
PF02801
(Ketoacyl-synt_C)
PF08990
(Docking)
PF16197
(KAsynt_C_assoc) 		4 GLY A 366
VAL A 331
TRP A 364
TRP A 425
 None
 1.24A 1grmA-2hg4A:
undetectable		 1grmA-2hg4A:
1.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qo3 ERYAII ERYTHROMYCIN
POLYKETIDE SYNTHASE
MODULES 3 AND 4

(Saccharopolyspora
erythraea) 		PF00109
(ketoacyl-synt)
PF00698
(Acyl_transf_1)
PF02801
(Ketoacyl-synt_C)
PF16197
(KAsynt_C_assoc) 		4 GLY A 369
VAL A 334
TRP A 367
TRP A 428
 None
 1.20A 1grmA-2qo3A:
undetectable		 1grmA-2qo3A:
2.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fus EXTERIOR MEMBRANE
GLYCOPROTEIN GP120

(Simian
immunodeficiency
virus) 		PF00516
(GP120) 		4 GLY A 275
VAL A 462
TRP A 273
TRP A 349
 None
 1.38A 1grmA-3fusA:
undetectable		 1grmA-3fusA:
2.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f8u BETA-1 ADRENERGIC
RECEPTOR

(Meleagris
gallopavo) 		no annotation 4 GLY B 105
VAL B 102
TRP B 109
TRP B 117
 None
None
None
P32  B 400 (-4.8A)
 1.18A 1grmA-5f8uB:
undetectable		 1grmA-5f8uB:
13.64