SIMILAR PATTERNS OF AMINO ACIDS FOR 1FFY_A_MRCA1993_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1b47 CBL

(Homo sapiens) 		PF02262
(Cbl_N)
PF02761
(Cbl_N2)
PF02762
(Cbl_N3) 		4 PRO A 214
HIS A 213
TRP A 202
GLU A 220
 None
 1.37A 1ffyA-1b47A:
0.0		 1ffyA-1b47A:
16.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1ile ISOLEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus) 		PF00133
(tRNA-synt_1)
PF08264
(Anticodon_1) 		5 PRO A  47
HIS A  57
TRP A 518
GLU A 550
TRP A 558
 None
 0.56A 1ffyA-1ileA:
32.9		 1ffyA-1ileA:
30.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qnr ENDO-1,4-B-D-MANNANA
SE

(Trichoderma
reesei) 		PF00150
(Cellulase) 		4 PRO A 170
TRP A  56
GLU A 205
TRP A 114
 None
GOL  A 411 (-4.0A)
MAB  A 401 (-3.9A)
MAB  A 401 (-3.6A)
 1.30A 1ffyA-1qnrA:
0.3		 1ffyA-1qnrA:
16.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1qu2 ISOLEUCYL-TRNA
SYNTHETASE

(Staphylococcus
aureus) 		PF00133
(tRNA-synt_1)
PF06827
(zf-FPG_IleRS)
PF08264
(Anticodon_1) 		6 PRO A  57
HIS A  67
TRP A 528
GLU A 554
TRP A 562
LYS A 598
 MRC  A1993 ( 4.7A)
MRC  A1993 (-4.1A)
None
MRC  A1993 (-3.2A)
MRC  A1993 (-4.8A)
None
 0.05A 1ffyA-1qu2A:
62.3		 1ffyA-1qu2A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cb1 O-ACETYL HOMOSERINE
SULFHYDRYLASE

(Thermus
thermophilus) 		PF01053
(Cys_Met_Meta_PP) 		4 PRO A 152
HIS A 371
TRP A 203
GLU A 147
 None
None
None
PLP  A1202 ( 3.8A)
 1.44A 1ffyA-2cb1A:
0.0		 1ffyA-2cb1A:
19.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3doo SHIKIMATE
DEHYDROGENASE

(Staphylococcus
epidermidis) 		PF01488
(Shikimate_DH)
PF08501
(Shikimate_dh_N) 		4 PRO A  62
HIS A  63
GLU A  65
LYS A  52
 None
 1.48A 1ffyA-3dooA:
0.2		 1ffyA-3dooA:
16.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lqb LOC792177 PROTEIN

(Danio rerio) 		PF01400
(Astacin) 		4 PRO A 171
HIS A 154
GLU A 167
LYS A   2
 None
 1.47A 1ffyA-3lqbA:
0.0		 1ffyA-3lqbA:
11.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pta DNA
(CYTOSINE-5)-METHYLT
RANSFERASE 1

(Homo sapiens) 		PF00145
(DNA_methylase)
PF01426
(BAH)
PF02008
(zf-CXXC) 		4 PRO A1375
HIS A1412
TRP A1519
GLU A1376
 None
 1.50A 1ffyA-3ptaA:
0.0		 1ffyA-3ptaA:
21.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wh9 ENDO-BETA-1,4-MANNAN
ASE

(Aspergillus
niger) 		PF00150
(Cellulase) 		4 PRO A 169
TRP A  54
GLU A 204
TRP A 112
 None
 1.25A 1ffyA-3wh9A:
0.5		 1ffyA-3wh9A:
17.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ziz GH5
ENDO-BETA-1,4-MANNAN
ASE

(Podospora
anserina) 		PF00150
(Cellulase) 		4 PRO A 170
TRP A  56
GLU A 205
TRP A 114
 None
GOL  A1351 (-3.9A)
None
TRS  A1352 ( 4.7A)
 1.24A 1ffyA-3zizA:
0.7		 1ffyA-3zizA:
17.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qp0 ENDO-BETA-MANNANASE

(Rhizomucor
miehei) 		PF00150
(Cellulase) 		4 PRO A 176
TRP A  55
GLU A 220
TRP A 111
 None
 1.29A 1ffyA-4qp0A:
1.3		 1ffyA-4qp0A:
16.81