SIMILAR PATTERNS OF AMINO ACIDS FOR 1FDW_A_ESTA350

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1a27 17-BETA-HYDROXYSTERO
ID-DEHYDROGENASE

(Homo sapiens) 		PF00106
(adh_short) 		8 VAL A 143
LEU A 149
PRO A 187
TYR A 218
SER A 222
VAL A 225
PHE A 259
MET A 279
 EST  A 350 (-4.5A)
EST  A 350 (-4.4A)
EST  A 350 (-4.1A)
None
None
EST  A 350 (-4.7A)
EST  A 350 (-4.0A)
EST  A 350 (-3.7A)
 0.63A 1fdwA-1a27A:
42.2		 1fdwA-1a27A:
99.65
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1a27 17-BETA-HYDROXYSTERO
ID-DEHYDROGENASE

(Homo sapiens) 		PF00106
(adh_short) 		6 VAL A 143
LEU A 149
TYR A 218
PHE A 259
MET A 279
GLU A 282
 EST  A 350 (-4.5A)
EST  A 350 (-4.4A)
None
EST  A 350 (-4.0A)
EST  A 350 (-3.7A)
EST  A 350 ( 4.6A)
 0.86A 1fdwA-1a27A:
42.2		 1fdwA-1a27A:
99.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jny ELONGATION FACTOR
1-ALPHA

(Sulfolobus
solfataricus) 		PF00009
(GTP_EFTU)
PF03143
(GTP_EFTU_D3)
PF03144
(GTP_EFTU_D2) 		5 VAL A 313
LEU A 259
PRO A 250
PHE A 267
GLU A 275
 None
 1.32A 1fdwA-1jnyA:
4.6		 1fdwA-1jnyA:
22.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kp2 ARGININOSUCCINATE
SYNTHETASE

(Escherichia
coli) 		PF00764
(Arginosuc_synth) 		5 VAL A 238
LEU A 298
PRO A 245
PHE A 240
GLU A 304
 None
 1.45A 1fdwA-1kp2A:
3.3		 1fdwA-1kp2A:
23.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kwg BETA-GALACTOSIDASE

(Thermus
thermophilus) 		PF02449
(Glyco_hydro_42)
PF08532
(Glyco_hydro_42M)
PF08533
(Glyco_hydro_42C) 		5 VAL A 192
LEU A 173
PRO A 195
SER A 205
PHE A 159
 None
 1.22A 1fdwA-1kwgA:
1.8		 1fdwA-1kwgA:
21.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qaf PROTEIN (COPPER
AMINE OXIDASE)

(Escherichia
coli) 		PF01179
(Cu_amine_oxid)
PF02727
(Cu_amine_oxidN2)
PF02728
(Cu_amine_oxidN3)
PF07833
(Cu_amine_oxidN1) 		5 VAL A 457
LEU A 332
SER A 343
VAL A 345
PHE A 474
 None
 1.27A 1fdwA-1qafA:
undetectable		 1fdwA-1qafA:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qrz PLASMINOGEN

(Homo sapiens) 		PF00089
(Trypsin) 		5 VAL A 598
LEU A 652
PRO A 664
GLN A 631
VAL A 662
 None
 1.44A 1fdwA-1qrzA:
undetectable		 1fdwA-1qrzA:
20.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1rz9 REP PROTEIN

(Adeno-associated
dependoparvovirus
B) 		PF08724
(Rep_N) 		5 VAL A 108
LEU A 104
VAL A  94
PHE A  63
GLU A   6
 None
 1.50A 1fdwA-1rz9A:
undetectable		 1fdwA-1rz9A:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1u0m PUTATIVE POLYKETIDE
SYNTHASE

(Streptomyces
coelicolor) 		PF00195
(Chal_sti_synt_N)
PF02797
(Chal_sti_synt_C) 		5 VAL A 269
LEU A 329
SER A 262
VAL A 286
PHE A 291
 None
 1.42A 1fdwA-1u0mA:
undetectable		 1fdwA-1u0mA:
23.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b4i OUTER CAPSID PROTEIN
VP4

(Rotavirus A) 		PF17477
(Rota_VP4_MID) 		5 VAL A 353
SER A 377
VAL A 378
PHE A 275
GLU A 463
 None
 1.14A 1fdwA-2b4iA:
undetectable		 1fdwA-2b4iA:
22.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2de2 DIBENZOTHIOPHENE
DESULFURIZATION
ENZYME B

(Rhodococcus sp.
IGTS8) 		no annotation 5 PRO A 319
GLN A 270
SER A 360
VAL A 273
GLU A 355
 None
 1.46A 1fdwA-2de2A:
undetectable		 1fdwA-2de2A:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hpg ABC TRANSPORTER,
PERIPLASMIC
SUBSTRATE-BINDING
PROTEIN

(Thermotoga
maritima) 		PF03480
(DctP) 		5 VAL A  57
LEU A 256
SER A 249
VAL A 248
GLU A 265
 None
 1.22A 1fdwA-2hpgA:
undetectable		 1fdwA-2hpgA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i6d RNA
METHYLTRANSFERASE,
TRMH FAMILY

(Porphyromonas
gingivalis) 		PF00588
(SpoU_methylase) 		5 VAL A  55
LEU A  84
PRO A  58
VAL A  63
GLU A  65
 None
 1.20A 1fdwA-2i6dA:
2.1		 1fdwA-2i6dA:
24.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ku7 MLL1 PHD3-CYP33 RRM
CHIMERIC PROTEIN

(Homo sapiens) 		PF00076
(RRM_1)
PF00628
(PHD) 		5 LEU A  19
PRO A  96
TYR A  24
SER A  28
GLU A  22
 None
 1.36A 1fdwA-2ku7A:
undetectable		 1fdwA-2ku7A:
17.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x40 BETA-GLUCOSIDASE

(Thermotoga
neapolitana) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 VAL A 166
LEU A 186
VAL A 228
PHE A 165
GLU A 195
 BR  A1724 ( 4.7A)
None
None
None
None
 1.35A 1fdwA-2x40A:
4.5		 1fdwA-2x40A:
18.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x9z CELL WALL SURFACE
ANCHOR FAMILY
PROTEIN

(Streptococcus
pneumoniae) 		PF16569
(GramPos_pilinBB)
PF16570
(GramPos_pilinD3) 		5 VAL A 444
LEU A 247
PRO A 442
PHE A 195
GLU A 221
 None
 1.42A 1fdwA-2x9zA:
undetectable		 1fdwA-2x9zA:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3d34 SPONDIN-2

(Homo sapiens) 		PF06468
(Spond_N) 		5 VAL A 126
LEU A  80
VAL A  64
PHE A 136
GLU A  73
 None
 1.18A 1fdwA-3d34A:
undetectable		 1fdwA-3d34A:
22.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nqh GLYCOSYL HYDROLASE

(Bacteroides
thetaiotaomicron) 		PF04616
(Glyco_hydro_43) 		5 VAL A 266
PRO A 277
SER A 308
VAL A 302
PHE A 212
 None
 1.40A 1fdwA-3nqhA:
undetectable		 1fdwA-3nqhA:
22.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3son HYPOTHETICAL NUDIX
HYDROLASE

(Listeria
monocytogenes) 		PF00293
(NUDIX) 		5 VAL A 103
LEU A 105
PRO A  11
VAL A  35
GLU A  55
 None
 1.46A 1fdwA-3sonA:
undetectable		 1fdwA-3sonA:
22.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tih HIV-1 CLADE C
ZM109F.PB4 GP120

(Human
immunodeficiency
virus 1) 		PF00516
(GP120) 		5 VAL A  65
LEU A 111
PRO A 212
VAL A 255
PHE A 210
 None
 0.97A 1fdwA-3tihA:
undetectable		 1fdwA-3tihA:
18.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b9g CS6 FIMBRIAL SUBUNIT
B, CS6 FIMBRIAL
SUBUNIT A

(Escherichia
coli) 		PF16831
(CssAB) 		5 VAL A  41
LEU A 134
SER A 137
VAL A  52
PHE A 111
 None
 1.32A 1fdwA-4b9gA:
undetectable		 1fdwA-4b9gA:
17.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4dpg LYSINE--TRNA LIGASE

(Homo sapiens) 		PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon) 		5 VAL A 490
LEU A 488
SER A 359
VAL A 362
MET A 549
 None
 1.43A 1fdwA-4dpgA:
undetectable		 1fdwA-4dpgA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k6n AMINODEOXYCHORISMATE
LYASE

(Saccharomyces
cerevisiae) 		PF01063
(Aminotran_4) 		5 VAL A 305
LEU A 350
PRO A 319
SER A 289
GLU A 285
 None
 1.37A 1fdwA-4k6nA:
undetectable		 1fdwA-4k6nA:
21.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rk2 PUTATIVE SUGAR ABC
TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN

(Rhizobium etli) 		PF01547
(SBP_bac_1) 		5 LEU A 215
PRO A 206
SER A 201
VAL A 203
MET A 416
 None
 1.46A 1fdwA-4rk2A:
undetectable		 1fdwA-4rk2A:
22.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wk0 INTEGRIN BETA-1

(Homo sapiens) 		PF00362
(Integrin_beta)
PF17205
(PSI_integrin) 		5 VAL B 436
LEU B 101
SER B 412
VAL B 373
PHE B 423
 None
 1.39A 1fdwA-4wk0B:
2.9		 1fdwA-4wk0B:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xvm DNA POLYMERASE NU

(Homo sapiens) 		PF00476
(DNA_pol_A) 		5 VAL A 653
LEU A 644
TYR A 715
VAL A 681
PHE A 654
 None
 1.38A 1fdwA-4xvmA:
undetectable		 1fdwA-4xvmA:
18.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4y97 DNA POLYMERASE ALPHA
CATALYTIC SUBUNIT

(Homo sapiens) 		PF08996
(zf-DNA_Pol) 		5 LEU B1408
PRO B1305
VAL B1295
PHE B1422
GLU B1402
 None
 1.46A 1fdwA-4y97B:
undetectable		 1fdwA-4y97B:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ff8 G/T
MISMATCH-SPECIFIC
THYMINE DNA
GLYCOSYLASE

(Homo sapiens) 		PF03167
(UDG) 		5 PRO A 260
TYR A 235
SER A 239
VAL A 242
MET A 192
 None
 1.31A 1fdwA-5ff8A:
undetectable		 1fdwA-5ff8A:
19.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5guj DNA PRIMASE

(Bacillus
subtilis) 		PF08275
(Toprim_N)
PF10410
(DnaB_bind)
PF13155
(Toprim_2) 		5 VAL A 297
LEU A 292
TYR A 311
VAL A 335
GLU A 326
 None
 1.27A 1fdwA-5gujA:
2.7		 1fdwA-5gujA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i5p TRAP TRANSPORTER
SOLUTE BINDING
PROTEIN

(uncultured
marine
bacterium) 		PF03480
(DctP) 		5 VAL A  26
LEU A  28
SER A  49
VAL A  52
MET A 243
 None
 1.38A 1fdwA-5i5pA:
undetectable		 1fdwA-5i5pA:
24.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5it9 RIBOSOMAL PROTEIN
ES24

(Kluyveromyces
lactis) 		PF01282
(Ribosomal_S24e) 		5 VAL Y  57
LEU Y  44
VAL Y  27
PHE Y  60
GLU Y  39
 None
 1.32A 1fdwA-5it9Y:
undetectable		 1fdwA-5it9Y:
20.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kkx TBPB

(Neisseria
meningitidis) 		PF01298
(TbpB_B_D)
PF17483
(TbpB_C) 		5 VAL A 512
LEU A 587
TYR A 580
PHE A 514
GLU A 585
 None
 1.50A 1fdwA-5kkxA:
undetectable		 1fdwA-5kkxA:
22.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5szp PROTOCADHERIN GAMMA
B7

(Mus musculus) 		PF00028
(Cadherin)
PF08266
(Cadherin_2) 		5 VAL A  56
LEU A  11
SER A   6
VAL A  91
PHE A  45
 None
 1.35A 1fdwA-5szpA:
undetectable		 1fdwA-5szpA:
21.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xvs GDP/UDP-N,N'-DIACETY
LBACILLOSAMINE
2-EPIMERASE
(HYDROLYZING)

(Acinetobacter
baumannii) 		no annotation 5 VAL A 110
LEU A  98
PHE A  86
MET A  93
GLU A  61
 None
 1.21A 1fdwA-5xvsA:
8.3		 1fdwA-5xvsA:
11.56