SIMILAR PATTERNS OF AMINO ACIDS FOR 1EKJ_C_CUC1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2d3t FATTY OXIDATION
COMPLEX ALPHA
SUBUNIT

(Pseudomonas
fragi) 		PF00378
(ECH_1)
PF00725
(3HCDH)
PF02737
(3HCDH_N) 		4 CYH A 289
SER A 285
SER A 677
ARG A 668
 None
 0.90A 1ekjC-2d3tA:
1.6
1ekjD-2d3tA:
1.7		 1ekjC-2d3tA:
14.85
1ekjD-2d3tA:
14.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2d3t FATTY OXIDATION
COMPLEX ALPHA
SUBUNIT

(Pseudomonas
fragi) 		PF00378
(ECH_1)
PF00725
(3HCDH)
PF02737
(3HCDH_N) 		4 SER A 677
ARG A 668
CYH A 289
SER A 285
 None
 0.91A 1ekjC-2d3tA:
1.6
1ekjD-2d3tA:
1.7		 1ekjC-2d3tA:
14.85
1ekjD-2d3tA:
14.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jq5 SEC-C MOTIF

(Rhodopseudomonas
palustris) 		PF02810
(SEC-C) 		4 CYH A  14
SER A   7
CYH A   5
SER A  34
 ZN  A 129 (-2.3A)
ZN  A 129 ( 4.0A)
ZN  A 129 (-2.3A)
ZN  A 129 ( 4.9A)
 1.19A 1ekjC-2jq5A:
0.0
1ekjD-2jq5A:
0.0		 1ekjC-2jq5A:
19.81
1ekjD-2jq5A:
19.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w55 XANTHINE
DEHYDROGENASE

(Rhodobacter
capsulatus) 		PF01315
(Ald_Xan_dh_C)
PF02738
(Ald_Xan_dh_C2) 		4 CYH B 297
CYH B 308
SER B 304
ARG B 330
 None
 1.36A 1ekjC-2w55B:
0.5
1ekjD-2w55B:
0.0		 1ekjC-2w55B:
14.87
1ekjD-2w55B:
14.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zsj THREONINE SYNTHASE

(Aquifex
aeolicus) 		PF00291
(PALP) 		4 CYH A  84
SER A  86
SER A  91
ARG A 162
 None
 1.19A 1ekjC-2zsjA:
0.0
1ekjD-2zsjA:
0.0		 1ekjC-2zsjA:
22.10
1ekjD-2zsjA:
22.10