SIMILAR PATTERNS OF AMINO ACIDS FOR 1DRF_A_FOLA187_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bbu PROTEIN (LYSYL-TRNA
SYNTHETASE)

(Escherichia
coli) 		PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon) 		4 GLU A 256
ASN A 424
ARG A 262
THR A 207
 None
LYS  A 505 (-4.0A)
LYS  A 505 (-4.0A)
None
 1.37A 1drfA-1bbuA:
0.2		 1drfA-1bbuA:
20.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mz5 SIALIDASE

(Trypanosoma
rangeli) 		PF13385
(Laminin_G_3)
PF13859
(BNR_3) 		4 GLU A  29
ASN A  24
ARG A  88
THR A  17
 None
NAG  A 652 (-1.8A)
None
None
 1.38A 1drfA-1mz5A:
0.0		 1drfA-1mz5A:
17.02
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1u70 DIHYDROFOLATE
REDUCTASE

(Mus musculus) 		PF00186
(DHFR_1) 		4 GLU A  30
ASN A  64
ARG A  70
THR A 136
 MTX  A 187 (-3.0A)
MTX  A 187 (-3.6A)
MTX  A 187 (-3.1A)
MTX  A 187 (-4.4A)
 0.78A 1drfA-1u70A:
30.9		 1drfA-1u70A:
89.25
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1u71 DIHYDROFOLATE
REDUCTASE

(Homo sapiens) 		PF00186
(DHFR_1) 		4 GLU A  30
ASN A  64
ARG A  70
THR A 136
 MXA  A 187 (-2.9A)
MXA  A 187 (-4.5A)
None
MXA  A 187 (-4.3A)
 0.80A 1drfA-1u71A:
33.4		 1drfA-1u71A:
99.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2grv LPQW

(Mycolicibacterium
smegmatis) 		PF00496
(SBP_bac_5) 		4 GLU A 551
ASN A 520
ARG A 447
THR A 339
 None
 0.95A 1drfA-2grvA:
0.0		 1drfA-2grvA:
14.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jb9 PRE-MRNA-SPLICING
FACTOR SPP42

(Schizosaccharomyces
pombe) 		PF08082
(PRO8NT)
PF08083
(PROCN)
PF10596
(U6-snRNA_bdg)
PF10597
(U5_2-snRNA_bdg)
PF10598
(RRM_4)
PF12134
(PRP8_domainIV) 		4 GLU A1784
ASN A1734
ARG A1772
THR A1907
 None
 1.33A 1drfA-3jb9A:
0.0		 1drfA-3jb9A:
6.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o0y LIPOPROTEIN

(Colwellia
psychrerythraea) 		PF05960
(DUF885) 		4 GLU A 478
ASN A 467
ARG A 545
THR A 434
 None
None
SO4  A 610 (-2.7A)
None
 1.34A 1drfA-3o0yA:
0.0		 1drfA-3o0yA:
14.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b3i FATTY ACID
BETA-OXIDATION
COMPLEX ALPHA-CHAIN
FADB

(Mycobacterium
tuberculosis) 		PF00378
(ECH_1)
PF00725
(3HCDH)
PF02737
(3HCDH_N) 		4 GLU A 283
ASN A  86
ARG A  93
THR A 154
 None
 1.45A 1drfA-4b3iA:
1.6		 1drfA-4b3iA:
13.14
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4g8z DIHYDROFOLATE
REDUCTASE

(Pneumocystis
jirovecii) 		PF00186
(DHFR_1) 		4 GLU X  32
ASN X  69
ARG X  75
THR X 144
 TOP  X 301 (-3.0A)
None
None
TOP  X 301 (-4.5A)
 0.85A 1drfA-4g8zX:
24.4		 1drfA-4g8zX:
37.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xb6 ALPHA-D-RIBOSE
1-METHYLPHOSPHONATE
5-TRIPHOSPHATE
SYNTHASE SUBUNIT
PHNI

(Escherichia
coli) 		PF05861
(PhnI) 		4 GLU C 252
ASN C 257
ARG C 189
THR C  96
 None
 1.33A 1drfA-4xb6C:
undetectable		 1drfA-4xb6C:
18.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5iva LPS-ASSEMBLY PROTEIN
LPTD
LPS-ASSEMBLY
LIPOPROTEIN LPTE

(Pseudomonas
aeruginosa;
Pseudomonas
aeruginosa) 		PF04453
(OstA_C)
PF04390
(LptE) 		4 GLU B 112
ASN A 564
ARG A 567
THR A 170
 None
 1.42A 1drfA-5ivaB:
undetectable		 1drfA-5ivaB:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u70 POTASSIUM CHANNEL
SUBFAMILY T MEMBER 1

(Gallus gallus) 		PF03493
(BK_channel_a)
PF07885
(Ion_trans_2) 		4 GLU A 371
ASN A 611
ARG A 517
THR A 950
 None
 1.42A 1drfA-5u70A:
undetectable		 1drfA-5u70A:
10.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6eq8 PERIPLASMIC
ALPHA-GALACTOSIDE-BI
NDING PROTEIN

(Agrobacterium
tumefaciens) 		no annotation 4 GLU D 546
ASN D 558
ARG D 532
THR D 229
 None
 1.50A 1drfA-6eq8D:
undetectable		 1drfA-6eq8D:
undetectable