SIMILAR PATTERNS OF AMINO ACIDS FOR 1DLS_A_MTXA188_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1huj INORGANIC
PYROPHOSPHATASE

(Saccharomyces
cerevisiae) 		PF00719
(Pyrophosphatase) 		4 TYR A  89
ARG A  78
VAL A 121
THR A 131
 None
 1.47A 1dlsA-1hujA:
0.0		 1dlsA-1hujA:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yw4 SUCCINYLGLUTAMATE
DESUCCINYLASE

(Chromobacterium
violaceum) 		PF04952
(AstE_AspA) 		4 TYR A 146
ARG A 142
VAL A  86
THR A 202
 None
 1.36A 1dlsA-1yw4A:
0.3		 1dlsA-1yw4A:
19.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e2v 3'-5'-EXONUCLEASE

(Saccharomyces
cerevisiae) 		PF01026
(TatD_DNase) 		4 TYR A  38
ARG A  74
VAL A 392
THR A 326
 None
 1.35A 1dlsA-3e2vA:
0.0		 1dlsA-3e2vA:
22.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ks7 PUTATIVE PUTATIVE
PNGASE F

(Bacteroides
fragilis) 		PF09112
(N-glycanase_N)
PF09113
(N-glycanase_C) 		4 TYR A 248
ARG A  68
VAL A 137
THR A 148
 None
 1.20A 1dlsA-3ks7A:
0.0		 1dlsA-3ks7A:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tl2 MALATE DEHYDROGENASE

(Bacillus
anthracis) 		PF00056
(Ldh_1_N)
PF02866
(Ldh_1_C) 		4 TYR A 192
ARG A 189
VAL A 252
THR A 154
 None
 1.46A 1dlsA-3tl2A:
0.1		 1dlsA-3tl2A:
22.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zqj UVRABC SYSTEM
PROTEIN A

(Mycobacterium
tuberculosis) 		PF00005
(ABC_tran) 		4 TYR A 694
ARG A 624
VAL A 648
THR A 628
 None
 1.39A 1dlsA-3zqjA:
0.0		 1dlsA-3zqjA:
10.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4q2c CRISPR-ASSOCIATED
HELICASE CAS3

(Thermobaculum
terrenum) 		PF00271
(Helicase_C) 		4 TYR A 354
ARG A 465
VAL A 504
THR A 471
 None
 1.16A 1dlsA-4q2cA:
0.0		 1dlsA-4q2cA:
11.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a7m BETA-XYLOSIDASE

(Trichoderma
reesei) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		4 TYR A 429
ARG A 221
VAL A 205
THR A 170
 ACT  A1923 ( 4.2A)
TRS  A1920 (-2.9A)
None
None
 1.42A 1dlsA-5a7mA:
0.0		 1dlsA-5a7mA:
12.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jvk UNCHARACTERIZED
PROTEIN

(Bacteroides
cellulosilyticus) 		no annotation 4 TYR A 316
ARG A 160
VAL A 341
THR A 386
 None
GOL  A 654 (-4.0A)
None
None
 1.21A 1dlsA-5jvkA:
0.3		 1dlsA-5jvkA:
15.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n9x ADENYLATION DOMAIN

(Streptomyces
sp.) 		PF00501
(AMP-binding)
PF13193
(AMP-binding_C) 		4 TYR A 166
ARG A 378
VAL A 161
THR A 314
 None
None
None
ATP  A 602 (-3.7A)
 1.34A 1dlsA-5n9xA:
undetectable		 1dlsA-5n9xA:
15.80