SIMILAR PATTERNS OF AMINO ACIDS FOR 13GS_B_SASB211

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1aec ACTINIDIN

(Actinidia
chinensis)
PF00112
(Peptidase_C1)
5 PRO A 132
VAL A 128
VAL A  13
ILE A 196
GLY A 168
None
1.49A 13gsB-1aecA:
undetectable
13gsB-1aecA:
20.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1i9g HYPOTHETICAL PROTEIN
RV2118C


(Mycobacterium
tuberculosis)
PF08704
(GCD14)
PF14801
(GCD14_N)
5 PHE A  98
PRO A  99
VAL A 121
ILE A 128
GLY A 125
None
1.25A 13gsB-1i9gA:
0.0
13gsB-1i9gA:
21.23
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1lbk GLUTATHIONE
S-TRANSFERASE CLASS
PI CHIMAERA (CODA)


(Homo sapiens)
PF02798
(GST_N)
PF14497
(GST_C_3)
8 PHE A   8
PRO A   9
VAL A  10
ARG A  13
VAL A  35
ILE A 104
TYR A 108
PRO A 202
GSH  A 504 (-4.7A)
None
None
GSH  A 504 (-3.7A)
None
None
None
None
0.62A 13gsB-1lbkA:
36.0
13gsB-1lbkA:
97.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1n8p CYSTATHIONINE
GAMMA-LYASE


(Saccharomyces
cerevisiae)
PF01053
(Cys_Met_Meta_PP)
5 PHE A 181
PRO A 147
ILE A 370
PRO A 284
GLY A 305
PLP  A 400 (-4.3A)
None
None
None
None
1.50A 13gsB-1n8pA:
0.0
13gsB-1n8pA:
19.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1sdo BSTYI

(Geobacillus
stearothermophilus)
PF09195
(Endonuc-BglII)
5 VAL A 156
VAL A  18
ILE A 199
PRO A 195
GLY A  12
None
1.01A 13gsB-1sdoA:
undetectable
13gsB-1sdoA:
23.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cev PROTEIN (ARGINASE)

([Bacillus]
caldovelox)
PF00491
(Arginase)
5 VAL A 272
VAL A 287
ILE A 101
PRO A 274
GLY A  23
None
1.32A 13gsB-2cevA:
0.2
13gsB-2cevA:
21.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cxi PHENYLALANYL-TRNA
SYNTHETASE BETA
CHAIN


(Pyrococcus
horikoshii)
PF03483
(B3_4)
PF03484
(B5)
5 PRO A 214
VAL A 140
ILE A 154
TYR A 106
PRO A 200
None
1.32A 13gsB-2cxiA:
undetectable
13gsB-2cxiA:
21.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ekc TRYPTOPHAN SYNTHASE
ALPHA CHAIN


(Aquifex
aeolicus)
PF00290
(Trp_syntA)
5 PHE A 176
PRO A 156
VAL A 177
VAL A 198
ILE A 127
None
1.43A 13gsB-2ekcA:
0.0
13gsB-2ekcA:
22.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2esv KK50.4 T CELL
RECEPTOR BETA CHAIN


(Homo sapiens)
PF07654
(C1-set)
PF07686
(V-set)
5 VAL E 123
VAL E 158
ILE E  13
PRO E 233
GLY E 219
None
1.43A 13gsB-2esvE:
undetectable
13gsB-2esvE:
20.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eyr NKT12

(Homo sapiens)
PF07654
(C1-set)
PF07686
(V-set)
5 VAL B 123
VAL B 158
ILE B  13
PRO B 233
GLY B 219
None
1.46A 13gsB-2eyrB:
undetectable
13gsB-2eyrB:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g39 ACETYL-COA HYDROLASE

(Pseudomonas
aeruginosa)
PF02550
(AcetylCoA_hydro)
PF13336
(AcetylCoA_hyd_C)
5 PRO A 259
ARG A 436
VAL A 346
ILE A 425
GLY A 353
None
1.44A 13gsB-2g39A:
undetectable
13gsB-2g39A:
19.72
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2gsr CLASS PI GST
GLUTATHIONE
S-TRANSFERASE


(Sus scrofa)
PF02798
(GST_N)
PF14497
(GST_C_3)
7 PHE A   8
PRO A   9
VAL A  10
ARG A  13
TYR A 106
PRO A 200
GLY A 203
GTS  A 208 (-4.7A)
None
None
GTS  A 208 (-4.0A)
None
None
None
0.25A 13gsB-2gsrA:
35.6
13gsB-2gsrA:
82.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2rha TRANSCRIPTIONAL
REGULATOR, TETR
FAMILY


(Novosphingobium
aromaticivorans)
PF14514
(TetR_C_9)
5 VAL A 153
ARG A 155
ILE A 157
PRO A  89
GLY A 148
None
1.16A 13gsB-2rhaA:
undetectable
13gsB-2rhaA:
23.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yqu 2-OXOGLUTARATE
DEHYDROGENASE E3
COMPONENT


(Thermus
thermophilus)
PF02852
(Pyr_redox_dim)
PF07992
(Pyr_redox_2)
5 PRO A 167
VAL A 166
VAL A 193
ILE A  58
GLY A 190
None
1.42A 13gsB-2yquA:
undetectable
13gsB-2yquA:
19.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zoo PROBABLE NITRITE
REDUCTASE


(Pseudoalteromonas
haloplanktis)
PF00034
(Cytochrom_C)
PF00394
(Cu-oxidase)
PF07732
(Cu-oxidase_3)
5 PRO A  13
VAL A  17
ILE A  86
TYR A 123
GLY A  59
None
1.35A 13gsB-2zooA:
undetectable
13gsB-2zooA:
18.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3agf GLUTAMINASE 1

(Bacillus
subtilis)
PF04960
(Glutaminase)
5 PHE A  70
PRO A 300
VAL A  68
ILE A 295
GLY A  50
None
1.45A 13gsB-3agfA:
undetectable
13gsB-3agfA:
23.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bol 5-METHYLTETRAHYDROFO
LATE S-HOMOCYSTEINE
METHYLTRANSFERASE


(Thermotoga
maritima)
PF00809
(Pterin_bind)
PF02574
(S-methyl_trans)
5 PRO A 277
VAL A 280
VAL A  49
ILE A 268
GLY A  20
None
None
None
None
K  A 703 (-3.9A)
1.26A 13gsB-3bolA:
undetectable
13gsB-3bolA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cea MYO-INOSITOL
2-DEHYDROGENASE


(Lactobacillus
plantarum)
PF01408
(GFO_IDH_MocA)
PF02894
(GFO_IDH_MocA_C)
5 PHE A 107
VAL A 110
ILE A 187
PRO A  84
GLY A 104
None
1.40A 13gsB-3ceaA:
undetectable
13gsB-3ceaA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fy4 6-4 PHOTOLYASE

(Arabidopsis
thaliana)
PF00875
(DNA_photolyase)
PF03441
(FAD_binding_7)
5 ARG A 439
ILE A 453
TYR A 454
PRO A 249
GLY A 428
None
1.48A 13gsB-3fy4A:
undetectable
13gsB-3fy4A:
16.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nzq BIOSYNTHETIC
ARGININE
DECARBOXYLASE


(Escherichia
coli)
PF02784
(Orn_Arg_deC_N)
5 PRO A 506
VAL A 507
VAL A 565
ILE A 376
GLY A 561
None
1.30A 13gsB-3nzqA:
undetectable
13gsB-3nzqA:
15.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o0d TRIACYLGLYCEROL
LIPASE


(Yarrowia
lipolytica)
PF01764
(Lipase_3)
PF03893
(Lipase3_N)
5 VAL A 184
VAL A 201
ILE A  85
PRO A 182
GLY A 172
None
1.29A 13gsB-3o0dA:
undetectable
13gsB-3o0dA:
19.54
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3o76 GLUTATHIONE
S-TRANSFERASE P 1


(Mus musculus)
PF02798
(GST_N)
PF14497
(GST_C_3)
7 PHE A   8
PRO A   9
VAL A  10
ARG A  13
TYR A 108
PRO A 202
GLY A 205
GTB  A 210 (-4.5A)
None
None
GTB  A 210 (-3.9A)
GTB  A 210 (-4.1A)
None
GTB  A 210 (-3.7A)
0.33A 13gsB-3o76A:
36.1
13gsB-3o76A:
84.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p5u ACTINIDIN

(Actinidia
arguta)
PF00112
(Peptidase_C1)
5 PRO A 132
VAL A 128
VAL A  13
ILE A 196
GLY A 168
None
1.49A 13gsB-3p5uA:
undetectable
13gsB-3p5uA:
22.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p9h TUMOR SUSCEPTIBILITY
GENE 101 PROTEIN


(Homo sapiens)
PF05743
(UEV)
5 PHE A 135
VAL A  61
VAL A 130
PRO A  62
GLY A 136
None
1.31A 13gsB-3p9hA:
undetectable
13gsB-3p9hA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rmt 3-PHOSPHOSHIKIMATE
1-CARBOXYVINYLTRANSF
ERASE 1


(Bacillus
halodurans)
PF00275
(EPSP_synthase)
5 PHE A  47
VAL A 233
ARG A  73
PRO A 234
GLY A  23
None
1.46A 13gsB-3rmtA:
undetectable
13gsB-3rmtA:
21.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3txa CELL WALL SURFACE
ANCHOR FAMILY
PROTEIN


(Streptococcus
agalactiae)
PF00092
(VWA)
5 PHE A 711
PRO A 712
ILE A 658
TYR A 675
PRO A 714
None
1.42A 13gsB-3txaA:
undetectable
13gsB-3txaA:
14.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bqn CAPSULAR
POLYSACCHARIDE
BIOSYNTHESIS PROTEIN


(Burkholderia
pseudomallei)
no annotation 5 PRO A  67
VAL A  68
VAL A  95
ILE A  49
GLY A  12
None
COA  A 320 (-3.9A)
None
None
None
1.35A 13gsB-4bqnA:
undetectable
13gsB-4bqnA:
23.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4elk HY19.3 TCR BETA
CHAIN (MOUSE
VARIABLE DOMAIN,
HUMAN CONSTANT
DOMAIN)


(Mus musculus)
PF07654
(C1-set)
PF07686
(V-set)
5 VAL B 121
VAL B 156
ILE B  14
PRO B 231
GLY B 217
None
1.46A 13gsB-4elkB:
undetectable
13gsB-4elkB:
21.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4id0 GLUTATHIONE
S-TRANSFERASE-LIKE
PROTEIN YIBF


(Pseudomonas
fluorescens)
PF13410
(GST_C_2)
PF13417
(GST_N_3)
5 PRO A  10
ILE A 191
TYR A 188
PRO A 202
GLY A 166
None
0.91A 13gsB-4id0A:
15.9
13gsB-4id0A:
22.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4iug BETA-GALACTOSIDASE A

(Aspergillus
oryzae)
PF01301
(Glyco_hydro_35)
PF10435
(BetaGal_dom2)
PF13363
(BetaGal_dom3)
PF13364
(BetaGal_dom4_5)
5 PRO A  73
VAL A  74
VAL A 945
PRO A 993
GLY A 948
None
1.10A 13gsB-4iugA:
undetectable
13gsB-4iugA:
12.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4m8u OLIGO-1,6-GLUCOSIDAS
E 1


(Bacillus
subtilis)
PF00128
(Alpha-amylase)
PF16657
(Malt_amylase_C)
5 PHE A  53
VAL A  52
VAL A  99
ILE A  84
PRO A  15
None
1.47A 13gsB-4m8uA:
undetectable
13gsB-4m8uA:
15.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r9g MBP1

(Caldanaerobius
polysaccharolyticus)
PF13416
(SBP_bac_8)
5 PHE A 116
PRO A 346
VAL A 136
ILE A 374
TYR A 376
None
1.48A 13gsB-4r9gA:
undetectable
13gsB-4r9gA:
20.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tr6 DNA POLYMERASE III
SUBUNIT BETA


(Bacillus
subtilis)
PF00712
(DNA_pol3_beta)
PF02767
(DNA_pol3_beta_2)
PF02768
(DNA_pol3_beta_3)
5 VAL A  23
VAL A  16
ILE A  31
TYR A 125
GLY A  48
None
1.29A 13gsB-4tr6A:
undetectable
13gsB-4tr6A:
21.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wva UNCHARACTERIZED
PROTEIN


(Thermus
thermophilus)
PF01204
(Trehalase)
5 PHE A 230
PRO A 229
VAL A 177
VAL A 157
PRO A 178
None
1.49A 13gsB-4wvaA:
2.7
13gsB-4wvaA:
20.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yzw AGAP004976-PA

(Anopheles
gambiae)
PF00372
(Hemocyanin_M)
PF03722
(Hemocyanin_N)
PF03723
(Hemocyanin_C)
5 ARG A 646
VAL A 568
TYR A 230
PRO A 651
GLY A 644
None
1.36A 13gsB-4yzwA:
undetectable
13gsB-4yzwA:
14.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zrm UDP-GLUCOSE
4-EPIMERASE


(Thermotoga
maritima)
PF01370
(Epimerase)
5 PHE A  71
VAL A  16
VAL A  70
ILE A 236
TYR A 170
None
None
None
None
NAD  A 401 (-4.7A)
1.47A 13gsB-4zrmA:
undetectable
13gsB-4zrmA:
22.01
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5d73 GLUTATHIONE
S-TRANSFERASE


(Wuchereria
bancrofti)
PF02798
(GST_N)
PF14497
(GST_C_3)
5 PHE A   8
PRO A   9
TYR A 106
PRO A 201
GLY A 204
GSH  A 301 (-4.9A)
None
None
None
None
0.41A 13gsB-5d73A:
31.2
13gsB-5d73A:
42.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dot CARBAMOYL-PHOSPHATE
SYNTHASE [AMMONIA],
MITOCHONDRIAL


(Homo sapiens)
PF00117
(GATase)
PF00988
(CPSase_sm_chain)
PF02142
(MGS)
PF02786
(CPSase_L_D2)
PF02787
(CPSase_L_D3)
5 PHE A 192
VAL A 190
ILE A 173
PRO A 195
GLY A  69
None
1.23A 13gsB-5dotA:
undetectable
13gsB-5dotA:
9.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h6j PIERISIN-1

(Pieris rapae)
no annotation 5 VAL A 113
VAL A 148
ILE A 177
PRO A  86
GLY A 171
None
1.42A 13gsB-5h6jA:
undetectable
13gsB-5h6jA:
22.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h6n PIERISIN-1

(Pieris rapae)
no annotation 5 VAL A 113
VAL A 148
ILE A 177
PRO A  86
GLY A 171
None
1.43A 13gsB-5h6nA:
undetectable
13gsB-5h6nA:
20.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i2h O-METHYLTRANSFERASE
FAMILY 2


(Planctopirus
limnophila)
PF00891
(Methyltransf_2)
PF16864
(Dimerisation2)
5 PHE A 257
PRO A 256
VAL A 254
ILE A 222
GLY A 250
None
1.49A 13gsB-5i2hA:
undetectable
13gsB-5i2hA:
20.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m2o GROUP I DOCKERIN

(Ruminococcus
flavefaciens)
no annotation 5 PRO B  93
VAL B  67
ARG B  62
VAL B  95
GLY B  29
None
1.45A 13gsB-5m2oB:
undetectable
13gsB-5m2oB:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mkc CELL WALL SURFACE
ANCHOR FAMILY
PROTEIN (JO),CELL
WALL SURFACE ANCHOR
FAMILY PROTEIN (IN)


(Streptococcus
pneumoniae)
no annotation 5 PHE A 713
PRO A 714
ILE A 661
TYR A 678
PRO A 716
None
1.43A 13gsB-5mkcA:
undetectable
13gsB-5mkcA:
22.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tkf LYTIC POLYSACCHARIDE
MONOOXYGENASE


(Neurospora
crassa)
PF03443
(Glyco_hydro_61)
5 VAL A 188
VAL A 220
ILE A  37
TYR A 194
GLY A 217
None
1.47A 13gsB-5tkfA:
undetectable
13gsB-5tkfA:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yac TRNA
(GUANINE(37)-N1)-MET
HYLTRANSFERASE TRM5B


(Pyrococcus
abyssi)
PF02475
(Met_10)
5 PHE A 326
VAL A 306
VAL A 273
ILE A 322
GLY A 308
None
1.25A 13gsB-5yacA:
undetectable
13gsB-5yacA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zbi PEPTIDE ASPARAGINYL
LIGASE


(Viola
canadensis)
no annotation 5 PRO A 249
ILE A  93
TYR A  59
PRO A 242
GLY A 253
None
1.43A 13gsB-5zbiA:
undetectable
13gsB-5zbiA:
18.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fn0 -

(-)
no annotation 5 ARG A 432
ILE A 446
TYR A 447
PRO A 242
GLY A 421
None
1.41A 13gsB-6fn0A:
undetectable
13gsB-6fn0A:
undetectable