SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'YCM'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DL9_A_V2HA602_0
(CYTOCHROME P450 2R1)
1l0q SURFACE LAYER
PROTEIN

(Methanosarcina
mazei)
5 / 12 ALA A 280
VAL A 284
ILE A  17
MET A 282
THR A 267
None
None
None
None
YCM  A 265 ( 3.5A)
1.23A 3dl9A-1l0qA:
undetectable
3dl9A-1l0qA:
21.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SM2_A_478A126_2
(GAG-PRO-POL
POLYPROTEIN)
1px5 2'-5'-OLIGOADENYLATE
SYNTHETASE 1

(Sus
scrofa)
5 / 11 VAL A 148
VAL A  36
ALA A 107
LEU A  77
LEU A 131
None
YCM  A  37 ( 3.0A)
None
None
None
0.98A 3sm2B-1px5A:
undetectable
3sm2B-1px5A:
16.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E3H_A_HQEA303_1
(CARBONIC ANHYDRASE 2)
1px5 2'-5'-OLIGOADENYLATE
SYNTHETASE 1

(Sus
scrofa)
5 / 10 VAL A  57
LEU A  77
VAL A  79
LEU A 105
VAL A 148
YCM  A  37 ( 4.3A)
None
None
None
None
0.93A 4e3hA-1px5A:
undetectable
4e3hA-1px5A:
19.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EJG_D_NCTD501_1
(CYTOCHROME P450 2A13)
1px5 2'-5'-OLIGOADENYLATE
SYNTHETASE 1

(Sus
scrofa)
4 / 6 PHE A 118
PHE A 114
ALA A 107
LEU A  40
None
None
None
YCM  A  37 ( 4.6A)
0.98A 4ejgD-1px5A:
undetectable
4ejgD-1px5A:
22.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WNU_A_QDNA602_1
(CYTOCHROME P450 2D6)
6ffh METABOTROPIC
GLUTAMATE RECEPTOR
5,ENDOLYSIN

(Escherichia
virus
T4;
Homo
sapiens)
5 / 11 GLY A 628
LEU A 630
LEU A1814
ALA A 593
PHE A 633
D7W  A4006 (-3.4A)
YCM  A 634 ( 4.2A)
None
None
OLA  A4004 (-4.8A)
1.17A 4wnuA-6ffhA:
undetectable
4wnuA-6ffhA:
9.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XTA_A_DIFA501_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2a8q U8 SNORNA-BINDING
PROTEIN X29

(Xenopus
laevis)
4 / 9 SER A 207
ALA A 206
LEU A 169
ILE A 200
YCM  A 174 ( 3.4A)
None
None
None
0.99A 4xtaA-2a8qA:
undetectable
4xtaA-2a8qA:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KMD_C_6UBC1304_1
(ION TRANSPORT
PROTEIN)
5tcx CD81 ANTIGEN
(Homo
sapiens)
4 / 5 ILE A 100
LEU A  91
GLY A  92
PHE A  94
None
None
YCM  A  89 ( 3.3A)
None
0.92A 5kmdC-5tcxA:
4.7
5kmdD-5tcxA:
1.0
5kmdC-5tcxA:
20.69
5kmdD-5tcxA:
20.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V5Z_A_1YNA602_2
(LANOSTEROL 14-ALPHA
DEMETHYLASE)
5c1m MU-TYPE OPIOID
RECEPTOR

(Mus
musculus)
3 / 3 GLY A  52
THR A 311
PRO A  58
None
None
YCM  A  57 ( 2.6A)
0.61A 5v5zA-5c1mA:
1.3
5v5zA-5c1mA:
20.79