SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'VIB'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ME7_A_MOAA600_1
(INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE)
5edl PUTATIVE
HMP/THIAMINE
PERMEASE PROTEIN
YKOE

(Bacillus
subtilis)
4 / 8 SER A 127
ILE A  91
GLY A  92
GLY A 120
None
VIB  A 201 ( 4.2A)
VIB  A 201 ( 4.6A)
None
0.73A 1me7A-5edlA:
undetectable
1me7A-5edlA:
17.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NG8_A_DVAA8_0
(GRAMICIDIN A)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
4 / 4 GLY A 112
VAL A 140
TRP A 114
GLY A 115
None
None
VIB  A 401 (-3.7A)
None
1.11A 1ng8A-4nmyA:
undetectable
1ng8A-4nmyA:
3.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NG8_B_DVAB8_0
(GRAMICIDIN A)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
4 / 4 GLY A 112
VAL A 140
TRP A 114
GLY A 115
None
None
VIB  A 401 (-3.7A)
None
1.10A 1ng8B-4nmyA:
undetectable
1ng8B-4nmyA:
3.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1YVP_A_ACTA2001_0
(60-KDA SS-A/RO
RIBONUCLEOPROTEIN)
3myu HIGH AFFINITY
TRANSPORT SYSTEM
PROTEIN P37

(Mycoplasma
genitalium)
4 / 5 TYR A 176
SER A 216
SER A 218
ASN A  95
VIB  A 500 (-3.8A)
None
None
VIB  A 500 ( 4.8A)
1.07A 1yvpA-3myuA:
undetectable
1yvpA-3myuA:
22.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NV4_A_ACTA148_0
(UPF0066 PROTEIN
AF_0241)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
3 / 3 VAL A 122
GLU A  64
GLU A 119
None
VIB  A 401 (-2.9A)
None
0.80A 2nv4A-4nmyA:
undetectable
2nv4A-4nmyA:
16.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y00_B_Y00B601_2
(BETA-1 ADRENERGIC
RECEPTOR)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
3 / 3 VAL A  84
ASN A  15
TRP A  12
None
VIB  A 401 (-3.3A)
VIB  A 401 (-3.6A)
1.10A 2y00B-4nmyA:
undetectable
2y00B-4nmyA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3D91_A_REMA350_1
(RENIN)
4kys THIAMINE
PYRIDINYLASE I

(Clostridium
botulinum)
5 / 12 ASP A 302
GLY A 301
PHE A  55
LEU A 380
ALA A 125
VIB  A 501 (-2.9A)
None
None
None
None
1.12A 3d91A-4kysA:
undetectable
3d91A-4kysA:
20.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QEO_A_LLTA261_1
(DEOXYCYTIDINE KINASE)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
5 / 10 VAL A 180
LEU A 187
TYR A 274
PHE A 123
GLU A  64
None
None
None
None
VIB  A 401 (-2.9A)
1.37A 3qeoA-4nmyA:
0.0
3qeoA-4nmyA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UBE_A_2FAA401_1
(ADENOSINE KINASE)
1ig0 THIAMIN
PYROPHOSPHOKINASE

(Saccharomyces
cerevisiae)
5 / 12 SER A 202
GLY A 190
GLY A 191
PHE A 127
GLN A 198
None
None
None
None
VIB  A 702 ( 4.5A)
1.30A 4ubeA-1ig0A:
undetectable
4ubeA-1ig0A:
19.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IGW_A_CTYA404_1
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E II)
3myu HIGH AFFINITY
TRANSPORT SYSTEM
PROTEIN P37

(Mycoplasma
genitalium)
5 / 12 ILE A 343
GLY A 344
ILE A 111
PHE A 328
TYR A 348
VIB  A 500 (-4.8A)
VIB  A 500 (-3.6A)
None
None
None
1.22A 5igwA-3myuA:
undetectable
5igwA-3myuA:
23.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5M5K_B_ADNB502_2
(ADENOSYLHOMOCYSTEINA
SE)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
4 / 4 GLN A  63
THR A 191
LEU A 183
LEU A 187
None
VIB  A 401 (-3.0A)
None
None
1.31A 5m5kB-4nmyA:
undetectable
5m5kB-4nmyA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VLM_A_CVIA301_1
(REGULATORY PROTEIN
TETR)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
4 / 8 TRP A 114
GLN A  65
TRP A 158
VAL A 122
VIB  A 401 (-3.7A)
None
VIB  A 401 (-4.0A)
None
1.06A 5vlmA-4nmyA:
undetectable
5vlmA-4nmyA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VLM_F_CVIF301_1
(REGULATORY PROTEIN
TETR)
4nmy ABC-TYPE TRANSPORT
SYSTEM,
EXTRACELLULAR
SOLUTE-BINDING
PROTEIN

(Clostridioides
difficile)
4 / 8 TRP A 114
GLN A  65
TRP A 158
VAL A 122
VIB  A 401 (-3.7A)
None
VIB  A 401 (-4.0A)
None
0.97A 5vlmF-4nmyA:
undetectable
5vlmF-4nmyA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5X6Y_A_SAMA902_1
(MRNA CAPPING ENZYME
P5)
4kys THIAMINE
PYRIDINYLASE I

(Clostridium
botulinum)
3 / 3 TYR A  46
ASP A  78
ASP A  94
VIB  A 501 (-4.4A)
None
VIB  A 501 (-3.4A)
0.82A 5x6yA-4kysA:
undetectable
5x6yA-4kysA:
20.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5X7F_A_SAMA301_0
(PUTATIVE
O-METHYLTRANSFERASE
RV1220C)
5edl PUTATIVE
HMP/THIAMINE
PERMEASE PROTEIN
YKOE

(Bacillus
subtilis)
5 / 12 GLY A 120
GLY A  96
GLY A  98
VAL A 102
ILE A  91
None
None
MPG  A 203 ( 4.1A)
None
VIB  A 201 ( 4.2A)
0.95A 5x7fA-5edlA:
undetectable
5x7fA-5edlA:
23.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZW4_A_SAMA302_0
(PUTATIVE
O-METHYLTRANSFERASE
YRRM)
5edl PUTATIVE
HMP/THIAMINE
PERMEASE PROTEIN
YKOE

(Bacillus
subtilis)
5 / 12 ILE A  91
ALA A  57
ALA A  99
ALA A 119
PHE A 103
VIB  A 201 ( 4.2A)
None
None
None
None
0.89A 5zw4A-5edlA:
undetectable
5zw4A-5edlA:
25.51