SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'VDM'


List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1C9S_T_TRPT81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)		 5hvo ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE
(UDP-FORMING)
(Aspergillus
fumigatus) 		4 / 7 GLY A 387
ALA A 415
THR A 211
SER A 417
 VDM  A 502 (-3.7A)
None
None
None
 0.90A 1c9sT-5hvoA:
undetectable
1c9sU-5hvoA:
undetectable		 1c9sT-5hvoA:
11.30
1c9sU-5hvoA:
11.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HWK_A_117A2_2
(HMG-COA REDUCTASE)		 5hvm ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE
(UDP-FORMING)
(Aspergillus
fumigatus) 		5 / 11 ARG A 287
HIS A 361
SER A 324
LEU A 288
LEU A 334
 VDM  A 602 (-3.2A)
None
VDM  A 602 ( 4.2A)
None
None
 1.36A 1hwkB-5hvmA:
undetectable		 1hwkB-5hvmA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JFF_B_TA1B601_1
(TUBULIN BETA CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 1jffB-2jf4A:
undetectable		 1jffB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NW3_A_SAMA500_0
(HISTONE
METHYLTRANSFERASE
DOT1L)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 TYR A 202
GLU A 155
ASP A 160
ALA A 307
LEU A 337
 VDM  A1548 (-4.5A)
None
VDM  A1548 (-3.0A)
VDM  A1548 (-3.5A)
None
 1.31A 1nw3A-2jf4A:
undetectable		 1nw3A-2jf4A:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2CML_C_ZMRC3478_1
(NEURAMINIDASE)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 8 SER A 315
SER A 314
GLN A 446
TRP A 311
 None
None
VDM  A1548 (-4.2A)
None
 1.13A 2cmlC-2jf4A:
undetectable		 2cmlC-2jf4A:
19.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HXF_B_TA1B601_1
(TUBULIN BETA CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 2hxfB-2jf4A:
undetectable		 2hxfB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HXH_B_TA1B601_1
(TUBULIN BETA CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 2hxhB-2jf4A:
undetectable		 2hxhB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2P4N_B_TA1B601_1
(TUBULIN BETA CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 2p4nB-2jf4A:
undetectable		 2p4nB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QMQ_A_BEZA3_0
(PROTEIN NDRG2)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 7 TYR A 202
TYR A 157
GLN A 207
ARG A 205
 VDM  A1548 (-4.5A)
VDM  A1548 (-3.7A)
VDM  A1548 (-3.3A)
VDM  A1548 (-3.8A)
 1.50A 2qmqA-2jf4A:
0.0		 2qmqA-2jf4A:
20.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WBE_B_TA1B1439_1
(TUBULIN BETA-2B
CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 2wbeB-2jf4A:
undetectable		 2wbeB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DCO_B_TA1B601_1
(BOVINE BETA TUBULIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.97A 3dcoB-2jf4A:
undetectable		 3dcoB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EDL_B_TA1B601_1
(BETA TUBULIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.98A 3edlB-2jf4A:
undetectable		 3edlB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IZ0_B_TA1B820_1
(BETA TUBULIN, CHAIN
B FROM PDB 1JFF)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.95A 3iz0B-2jf4A:
undetectable		 3iz0B-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3J6P_B_TA1B502_1
(TUBULIN BETA CHAIN)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 12 ASP A 160
PHE A 407
THR A 402
PRO A 208
GLY A 310
 VDM  A1548 (-3.0A)
None
None
None
VDM  A1548 (-3.7A)
 0.98A 3j6pB-2jf4A:
undetectable		 3j6pB-2jf4A:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NY4_A_SMXA310_1
(BETA-LACTAMASE)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 8 LEU A 456
ALA A 449
THR A 439
TRP A 311
GLY A 310
 None
None
None
None
VDM  A1548 (-3.7A)
 1.10A 3ny4A-2jf4A:
undetectable		 3ny4A-2jf4A:
18.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_B_W9TB504_1
(HEMOLYTIC LECTIN
CEL-III)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 5 ASP A 160
GLU A 496
TYR A 157
GLN A 207
 VDM  A1548 (-3.0A)
None
VDM  A1548 (-3.7A)
VDM  A1548 (-3.3A)
 1.02A 3w9tB-2jf4A:
undetectable		 3w9tB-2jf4A:
21.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_D_W9TD506_1
(HEMOLYTIC LECTIN
CEL-III)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 5 ASP A 160
GLU A 496
TYR A 157
GLN A 207
 VDM  A1548 (-3.0A)
None
VDM  A1548 (-3.7A)
VDM  A1548 (-3.3A)
 1.10A 3w9tD-2jf4A:
undetectable		 3w9tD-2jf4A:
21.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E7B_C_ACTC513_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)		 5hvo ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE
(UDP-FORMING)
(Aspergillus
fumigatus) 		3 / 3 TYR A  96
HIS A 152
ARG A  19
 None
VDM  A 502 (-4.7A)
None
 1.22A 4e7bC-5hvoA:
1.1		 4e7bC-5hvoA:
23.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KHP_A_PARA1606_1
(16S RIBOSOMAL RNA
30S RIBOSOMAL
PROTEIN S9
30S RIBOSOMAL
PROTEIN S10)		 5hvo ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE
(UDP-FORMING)
(Aspergillus
fumigatus) 		3 / 3 TYR A 331
ARG A 287
SER A 324
 None
VDM  A 502 (-3.6A)
VDM  A 502 ( 4.1A)
 1.03A 4khpI-5hvoA:
undetectable
4khpJ-5hvoA:
undetectable		 4khpI-5hvoA:
14.97
4khpJ-5hvoA:
11.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LRH_A_FOLA301_1
(FOLATE RECEPTOR
ALPHA)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		3 / 3 ASP A  59
TRP A 453
SER A 280
 None
None
VDM  A1548 (-3.5A)
 0.90A 4lrhA-2jf4A:
undetectable		 4lrhA-2jf4A:
16.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4N49_A_SAMA601_1
(CAP-SPECIFIC MRNA
(NUCLEOSIDE-2'-O-)-M
ETHYLTRANSFERASE 1)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 4 ASN A 196
GLY A 197
ASP A 516
ASP A 160
 VDM  A1548 (-2.9A)
None
None
VDM  A1548 (-3.0A)
 1.39A 4n49A-2jf4A:
undetectable		 4n49A-2jf4A:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4S0V_A_SUVA2001_2
(HUMAN OREXIN
RECEPTOR TYPE 2
FUSION PROTEIN TO P.
ABYSII GLYCOGEN
SYNTHASE)		 5hvo ALPHA,ALPHA-TREHALOS
E-PHOSPHATE SYNTHASE
(UDP-FORMING)
(Aspergillus
fumigatus) 		4 / 5 ILE A  22
PRO A  21
HIS A 179
TYR A  96
 None
None
VDM  A 502 (-3.6A)
None
 1.26A 4s0vA-5hvoA:
6.4		 4s0vA-5hvoA:
20.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UAC_A_ACRA501_2
(CARBOHYDRATE ABC
TRANSPORTER
SUBSTRATE-BINDING
PROTEIN, CUT1 FAMILY
(TC 3.A.1.1.-))		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		4 / 7 SER A 309
TRP A 447
ASP A 448
THR A 402
 None
VDM  A1548 (-4.1A)
None
None
 1.12A 4uacA-2jf4A:
undetectable		 4uacA-2jf4A:
22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EAJ_B_FOLB201_1
(DIHYDROFOLATE
REDUCTASE)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		3 / 3 ASP A  65
ARG A 273
ARG A 205
 None
None
VDM  A1548 (-3.8A)
 0.98A 5eajB-2jf4A:
undetectable		 5eajB-2jf4A:
15.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5X66_D_MTXD402_1
(THYMIDYLATE SYNTHASE)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 10 ARG A 154
PHE A 153
GLY A 517
PHE A 518
ASN A 522
 None
VDM  A1548 (-3.8A)
None
VDM  A1548 (-4.6A)
None
 1.43A 5x66D-2jf4A:
undetectable		 5x66D-2jf4A:
20.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6CGD_A_AKNA600_1
(BIFUNCTIONAL AAC/APH)		 2jf4 PERIPLASMIC
TREHALASE
(Escherichia
coli) 		5 / 10 GLY A 197
TYR A 157
ASP A  65
GLU A 283
TYR A 512
 None
VDM  A1548 (-3.7A)
None
None
VDM  A1548 (-4.4A)
 1.05A 6cgdA-2jf4A:
0.6		 6cgdA-2jf4A:
8.79