SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'URP'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIA_B_SAMB1293_1
(GLYCINE
N-METHYLTRANSFERASE)
5thw DEACYLASE
(Burkholderia
multivorans)
4 / 5 ARG A 301
ASP A 372
SER A  95
ASN A  76
URP  A 503 (-2.9A)
None
ZN  A 501 ( 4.9A)
None
1.24A 1kiaB-5thwA:
undetectable
1kiaB-5thwA:
24.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LII_A_ADNA699_2
(ADENOSINE KINASE)
2fvm DIHYDROPYRIMIDINASE
(Lachancea
kluyveri)
4 / 4 SER A 331
LEU A  72
TYR A 172
GLY A 393
URP  A 604 (-4.4A)
URP  A 604 ( 4.9A)
None
URP  A 604 (-3.4A)
1.38A 1liiA-2fvmA:
2.6
1liiA-2fvmA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3R55_A_PZAA598_0
(LACTOPEROXIDASE)
5thw DEACYLASE
(Burkholderia
multivorans)
3 / 3 GLU A 205
PHE A 386
GLN A 206
None
None
URP  A 503 (-3.1A)
1.02A 3r55A-5thwA:
undetectable
3r55A-5thwA:
21.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3RGL_A_GLYA301_0
(GLYCYL-TRNA
SYNTHETASE ALPHA
SUBUNIT)
5thw DEACYLASE
(Burkholderia
multivorans)
4 / 8 ALA A 369
GLY A 370
GLN A 226
GLU A 141
URP  A 503 (-3.2A)
URP  A 503 (-3.5A)
URP  A 503 (-3.4A)
URP  A 503 ( 2.9A)
0.95A 3rglA-5thwA:
undetectable
3rglA-5thwA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4F5Z_A_BEZA302_0
(HALOALKANE
DEHALOGENASE)
2fvm DIHYDROPYRIMIDINASE
(Lachancea
kluyveri)
4 / 8 ASP A 358
PHE A 169
LEU A  72
HIS A  62
ZN  A 601 ( 3.1A)
KCX  A 167 ( 4.2A)
URP  A 604 ( 4.9A)
ZN  A 601 (-3.2A)
1.19A 4f5zA-2fvmA:
2.3
4f5zA-2fvmA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PQA_A_X8ZA401_1
(SUCCINYL-DIAMINOPIME
LATE DESUCCINYLASE)
5thw DEACYLASE
(Burkholderia
multivorans)
5 / 11 HIS A  96
ASP A 107
GLU A 141
GLU A 142
HIS A 395
ZN  A 501 ( 3.5A)
ZN  A 502 (-2.4A)
URP  A 503 ( 2.9A)
ZN  A 502 ( 2.1A)
ZN  A 502 ( 3.3A)
0.39A 4pqaA-5thwA:
28.2
4pqaA-5thwA:
23.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VEU_H_RITH602_1
(CYTOCHROME P450 3A5)
2fvm DIHYDROPYRIMIDINASE
(Lachancea
kluyveri)
5 / 12 LEU A 175
GLY A 393
ILE A 135
PHE A  97
GLU A 201
None
URP  A 604 (-3.4A)
KCX  A 167 ( 4.4A)
KCX  A 167 ( 4.5A)
None
1.03A 5veuH-2fvmA:
undetectable
5veuH-2fvmA:
22.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZHM_B_SAMB301_0
(TRNA
(GUANINE-N(1)-)-METH
YLTRANSFERASE)
5thw DEACYLASE
(Burkholderia
multivorans)
4 / 4 ARG A 301
SER A 394
ASP A 107
HIS A  96
URP  A 503 (-2.9A)
None
ZN  A 502 (-2.4A)
ZN  A 501 ( 3.5A)
1.45A 5zhmA-5thwA:
1.6
5zhmA-5thwA:
21.79