SIMILAR PATTERN OF AMINO ACIDS MAPPED TO 'UML'


List of Similar Pattern of Amino Acids


Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UYU_B_CAMB1416_0
(CYTOCHROME P450-CAM)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
4 / 8 THR A 153
LEU A 188
VAL A 191
THR A 105
UML  A 598 (-4.6A)
None
None
K  A 605 (-3.1A)
1.18A 1uyuB-4c13A:
undetectable
1uyuB-4c13A:
20.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QOW_A_SAMA417_1
(HISTONE-LYSINE
N-METHYLTRANSFERASE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
3 / 3 THR A 404
ASP A 475
GLU A 460
None
None
UML  A 598 (-3.1A)
0.65A 3qowA-4c13A:
2.4
3qowA-4c13A:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4BB2_B_STRB1384_1
(CORTICOSTEROID-BINDI
NG GLOBULIN)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
5 / 11 ALA A  41
SER A  42
GLN A  21
THR A  77
ILE A  38
None
UML  A 598 ( 3.8A)
None
None
None
1.38A 4bb2A-4c13A:
undetectable
4bb2B-4c13A:
undetectable
4bb2A-4c13A:
21.61
4bb2B-4c13A:
6.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L39_A_SALA602_1
(4-SUBSTITUTED
BENZOATES-GLUTAMATE
LIGASE GH3.12)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
4 / 6 TYR A 351
ARG A 335
THR A 115
GLY A 136
UML  A 598 ( 4.3A)
PO4  A 601 (-3.9A)
MG  A 503 ( 3.7A)
None
1.02A 4l39A-4c13A:
undetectable
4l39A-4c13A:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PGF_A_ADNA502_2
(ADENOSYLHOMOCYSTEINA
SE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
4 / 6 THR A 152
GLU A 177
THR A 153
HIS A 209
UML  A 598 (-4.0A)
MG  A 503 (-2.8A)
UML  A 598 (-4.6A)
None
1.07A 4pgfA-4c13A:
undetectable
4pgfA-4c13A:
21.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QWP_B_GCSB307_1
(CHITOSANASE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
4 / 7 GLU A 460
THR A 137
THR A 152
HIS A 353
UML  A 598 (-3.1A)
MG  A 503 (-3.3A)
UML  A 598 (-4.0A)
UML  A 598 ( 3.9A)
0.79A 4qwpB-4c13A:
undetectable
4qwpB-4c13A:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XQE_A_AG2A505_1
(HOMOSPERMIDINE
SYNTHASE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
5 / 12 ALA A 380
ASN A 407
PRO A 408
GLU A 460
TYR A 462
UML  A 598 ( 4.1A)
UML  A 598 (-4.5A)
None
UML  A 598 (-3.1A)
None
1.42A 4xqeA-4c13A:
3.6
4xqeA-4c13A:
23.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XQE_B_AG2B504_1
(HOMOSPERMIDINE
SYNTHASE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
5 / 12 ALA A 380
ASN A 407
PRO A 408
GLU A 460
TYR A 462
UML  A 598 ( 4.1A)
UML  A 598 (-4.5A)
None
UML  A 598 (-3.1A)
None
1.44A 4xqeB-4c13A:
3.7
4xqeB-4c13A:
23.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XRG_B_AG2B502_1
(HOMOSPERMIDINE
SYNTHASE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
5 / 12 ALA A 380
ASN A 407
PRO A 408
GLU A 460
TYR A 462
UML  A 598 ( 4.1A)
UML  A 598 (-4.5A)
None
UML  A 598 (-3.1A)
None
1.42A 4xrgB-4c13A:
undetectable
4xrgB-4c13A:
23.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5FA8_A_SAMA301_1
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE,
PUTATIVE)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
3 / 3 THR A 404
ASP A 475
GLU A 460
None
None
UML  A 598 (-3.1A)
0.59A 5fa8A-4c13A:
4.0
5fa8A-4c13A:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YBB_A_SAMA601_1
(TYPE I
RESTRICTION-MODIFICA
TION SYSTEM
METHYLTRANSFERASE
SUBUNIT)
4c13 UDP-N-ACETYLMURAMOYL
-L-ALANYL-D-GLUTAMAT
E--L-LYSINE LIGASE

(Staphylococcus
aureus)
4 / 5 THR A 404
ASP A 475
GLU A 460
ASN A 138
None
None
UML  A 598 (-3.1A)
None
1.39A 5ybbA-4c13A:
2.2
5ybbA-4c13A:
22.41